Control of Glycosylation-Related Genes by DNA Methylation: the Intriguing Case of the B3GALT5 Gene and Its Distinct Promoters
Abstract
1. Introduction
2. Methylation Control of Glycogenes
3. The Intriguing Case of the B3GALT5 Gene


4. Regulation of B3GALT5 Native Promoter
| HuCC-T1 | COLO-205 | HCT-15 | MKN-45 | MCF-7 | MDA-MB-231 | |
|---|---|---|---|---|---|---|
| NATIVE TRANSCRIPT | ||||||
| Expression levels | ++ | ++ | - | + | + | - |
| Effect of 5AZA | = | ND | = | ↑ | ND | = |
| Effect of TSA | = | ND | = | ↑ | ND | = |
| Methylation status of CpG island 1/2 (%) | 20/5 | ND | 80/75 | 80/30 | 80/5 | 90/80 |
| H3K27me2, H4K20me3 | very low | ND | high | low | low | high |
| H3K4me3, H3K79me2, H3K9Ac, H3K9-14Ac | very high | ND | low | high | high | low |
| LTR TRANSCRIPT | ||||||
| Expression levels | - | ++++ | - | ++ | - | - |
| Effect of 5AZA | = | ↓↓ | = | ↓↓ | ND | ND |
| Effect of TSA | = | = | = | = | ND | ND |
5. Regulation of the B3GALT5 LTR Promoter
6. Conclusions
Acknowledgments
Conflicts of Interest
References
- Varki, A. Biological roles of oligosaccharides: All of the theories are correct. Glycobiology 1993, 3, 97–130. [Google Scholar] [CrossRef]
- Chase, S.D.; Magnani, J.L.; Simon, S.I. E-selectin ligands as mechano sensitive receptors on neutrophils in health and disease. Ann. Biomed. Eng. 2012, 40, 849–859. [Google Scholar] [CrossRef]
- Dall’Olio, F.; Vanhooren, C.V.; Chen, C.P.; Slagboom, E.; Wuhrer, M.; Franceschi, C. N-glycomic biomarkers of biological aging and longevity: A link with inflammaging. Ageing Res. Rev. 2013, 12, 685–698. [Google Scholar] [CrossRef]
- Zoldoš, V.; Novokmet, M.; Bečeheli, I.; Lauc, G. Genomics and epigenomics of the human glycome. Glycoconj. J. 2013, 30, 41–50. [Google Scholar] [CrossRef]
- Lauc, G.; Vojta, A.; Zoldoš, V. Epigenetic regulation of glycosylation is the quantum mechanics of biology. Biochim. Biophys. Acta 2014, 1840, 65–70. [Google Scholar] [CrossRef]
- Yamada, N.; Kitamoto, S.; Yokoyama, S.; Hamada, T.; Goto, M.; Tsutsumida, H.; Higashi, M.; Yonezawa, S. Epigenetic regulation of mucin genes in human cancers. Clin. Epigenet. 2011, 2, 85–96. [Google Scholar] [CrossRef]
- McLarty, J.L.; Marsh, S.A.; Chatham, J.C. Post-translational protein modification by O-linked N-acetyl-glucosamine: Its role in mediating the adverse effects of diabetes on the heart. Life Sci. 2013, 92, 621–627. [Google Scholar] [CrossRef]
- Hanover, J.A.; Krause, M.W.; Love, D.C. Bittersweet memories: Linking metabolism to epigenetics through O-GlcNAcylation. Nat. Rev. Mol. Cell. Biol. 2012, 13, 312–321. [Google Scholar] [CrossRef]
- Jablonka, E.; Raz, G. Transgenerational epigenetic inheritance: Prevalence, mechanisms, and implications for the study of heredity and evolution. Q. Rev. Biol. 2009, 84, 131–176. [Google Scholar] [CrossRef]
- Schmitz, R.J.; Schultz, M.D.; Lewsey, M.G.; O’Malley, R.C.; Urich, M.A.; Libiger, O.; Schork, N.J.; Ecker, J.R. Transgenerational epigenetic instability is a source of novel methylation variants. Science 2011, 334, 369–373. [Google Scholar] [CrossRef]
- Gama-Sosa, M.A.; Slagel, V.A.; Trewyn, R.W.; Oxenhandler, R.; Kuo, K.C.; Gehrke, C.W.; Ehrlich, M. The 5-methylcytosine content of DNA from human tumors. Nucleic Acids Res. 1983, 11, 6883–6894. [Google Scholar] [CrossRef]
- Feinberg, A.P.; Gehrke, C.W.; Kuo, K.C.; Ehrlich, M. Reduced genomic 5-methylcytosine content in human colonic neoplasia. Cancer Res. 1988, 48, 1159–1161. [Google Scholar]
- Ehrlich, M. DNA methylation in cancer: Too much, but also too little. Oncogene 2002, 21, 5400–5413. [Google Scholar] [CrossRef]
- Ehrlich, M. DNA hypomethylation in cancer cells. Epigenomics 2009, 1, 239–259. [Google Scholar] [CrossRef]
- Kulis, M.; Queirós, A.C.; Beekman, R.; Martín-Subero, J.I. Intragenic DNA methylation in transcriptional regulation, normal differentiation and cancer. Biochim. Biophys. Acta 2013, 1829, 1161–1174. [Google Scholar]
- Saldova, R.; Dempsey, E.; Perez-Garay, M.; Marino, K.; Watson, J.A.; Blanco-Fernandez, A.; Struwe, W.B.; Harvey, D.J.; Madden, S.F.; Peracaula, R.; et al. 5-AZA-2'-deoxycytidine induced demethylation influences N-glycosylation of secreted glycoproteins in ovarian cancer. Epigenetics 2011, 6, 1362–1372. [Google Scholar] [CrossRef]
- Syrbe, U.; Jennrich, S.; Schottelius, A.; Richter, A.; Radbruch, A.; Hamann, A. Differential regulation of P-selectin ligand expression in naive versus memory CD4+ T cells: Evidence for epigenetic regulation of involved glycosyltransferase genes. Blood 2004, 104, 3243–3248. [Google Scholar] [CrossRef]
- Chachadi, V.B.; Cheng, H.; Klinkebiel, D.; Christman, J.K.; Cheng, P.W. 5-Aza-2'-deoxycytidine increases sialyl Lewis X on MUC1 by stimulating β-galactoside: α2,3-sialyltransferase 6 gene. Int. J. Biochem. Cell Biol. 2011, 43, 586–593. [Google Scholar] [CrossRef]
- Serpa, J.; Mesquita, P.; Mendes, N.; Oliveira, C.; Almeida, R.; Santos-Silva, F.; Reis, C.A.; Lependu, J.; David, L. Expression of Lea in gastric cancer cell lines depends on FUT3 expression regulated by promoter methylation. Cancer Lett. 2006, 242, 191–197. [Google Scholar] [CrossRef]
- Miyazaki, K.; Ohmori, K.; Izawa, M.; Koike, T.; Kumamoto, K.; Furukawa, K.; Ando, T.; Kiso, M.; Yamaji, T.; Hashimoto, Y.; et al. Loss of disialyl Lewisa the ligand for lymphocyte inhibitory receptor sialic acid-binding immunoglobulin-like lectin-7 (Siglec-7) associated with increased sialyl Lewisa expression on human colon cancers. Cancer Res. 2004, 64, 4498–4505. [Google Scholar] [CrossRef]
- Yusa, A.; Miyazaki, K.; Kimura, N.; Izawa, M.; Kannagi, R. Epigenetic silencing of the sulfate transporter gene DTDST induces sialyl Lewisx expression and accelerates proliferation of colon cancer cells. Cancer Res. 2010, 70, 4064–4073. [Google Scholar] [CrossRef]
- Kawamura, Y.I.; Toyota, M.; Kawashima, R.; Hagiwara, T.; Suzuki, H.; Imai, K.; Shinomura, Y.; Tokino, T.; Kannagi, R.; Dohi, T. DNA hypermethylation contributes to incomplete synthesis of carbohydrate determinants in gastrointestinal cancer. Gastroenterology 2008, 135, 142–151. [Google Scholar] [CrossRef]
- Tong, W.G.; Wierda, W.G.; Lin, E.; Kuang, S.Q.; Bekele, B.N.; Estrov, Z.; Wei, Y.; Yang, H.; Keating, M.J.; Garcia-Manero, G. Genome-wide DNA methylation profiling of chronic lymphocytic leukemia allows identification of epigenetically repressed molecular pathways with clinical impact. Epigenetics 2010, 5, 499–508. [Google Scholar] [CrossRef]
- Wang, H.R.; Hsieh, C.Y.; Twu, Y.C.; Yu, L.C. Expression of the human Sda β-1,4-N-acetylgalactosaminyltransferase II gene is dependent on the promoter methylation status. Glycobiology 2008, 18, 104–113. [Google Scholar]
- Dall’Olio, F.; Malagolini, N.; Chiricolo, M.; Trinchera, M.; Harduin-Lepers, A. The expanding roles of the Sda/Cad carbohydrate antigen and its cognate glycosyltransferase B4GALNT2. Biochim. Biophys. Acta 2014, 1840, 443–453. [Google Scholar] [CrossRef]
- Ide, Y.; Miyoshi, E.; Nakagawa, T.; Gu, J.; Tanemura, M.; Nishida, T.; Ito, T.; Yamamoto, H.; Kozutsumi, Y.; Taniguchi, N. Aberrant expression of N-acetylglucosaminyltransferase-IVa and IVb (GnT-IVa and b) in pancreatic cancer. Biochem. Biophys. Res. Commun. 2006, 341, 478–482. [Google Scholar] [CrossRef]
- Kizuka, Y.; Kitazume, S.; Yoshida, M.; Taniguchi, N. Brain-specific expression of N-acetylglucosaminyltransferase IX (GnT-IX) is regulated by epigenetic histone modifications. J. Biol. Chem. 2011, 286, 31875–31884. [Google Scholar] [CrossRef]
- Chakraborty, A.K.; Sousa, J.F.; Chakraborty, D.; Funasaka, Y.; Bhattacharya, M.; Chatterjee, A.; Pawelek, J. GnT-V expression and metastatic phenotypes in macrophage-melanoma fusion hybrids is down-regulated by 5-Aza-dC: Evidence for methylation sensitive, extragenic regulation of GnT-V transcription. Gene 2006, 374, 166–173. [Google Scholar] [CrossRef]
- Chihara, Y.; Sugano, K.; Kobayashi, A.; Kanai, Y.; Yamamoto, H.; Nakazono, M.; Fujimoto, H.; Kakizoe, T.; Fujimoto, K.; Hirohashi, S.; et al. Loss of blood group A antigen expression in bladder cancer caused by allelic loss and/or methylation of the ABO gene. Lab. Invest. 2005, 85, 895–907. [Google Scholar] [CrossRef]
- Dabelsteen, E.; Gao, S. ABO blood-group antigens in oral cancer. J. Dent. Res. 2005, 84, 21–28. [Google Scholar] [CrossRef]
- Gao, S.; Worm, J.; Guldberg, P.; Eiberg, H.; Krogdahl, A.; Liu, C.J.; Reibel, J.; Dabelsteen, E. Genetic and epigenetic alterations of the blood group ABO gene in oral squamous cell carcinoma. Int. J. Cancer 2004, 109, 230–237. [Google Scholar] [CrossRef]
- Giordanengo, V.; Ollier, L.; Lanteri, M.; Lesimple, J.; March, D.; Thyss, S.; Lefebvre, J.C. Epigenetic reprogramming of UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase (GNE) in HIV-1-infected CEM T cells. FASEB J. 2004, 18, 1961–1963. [Google Scholar]
- Oetke, C.; Hinderlich, S.; Reutter, W.; Pawlita, M. Epigenetically mediated loss of UDP-GlcNAc 2-epimerase/ManNAc kinase expression in hyposialylated cell lines. Biochem. Biophys. Res. Commun. 2003, 308, 892–898. [Google Scholar] [CrossRef]
- Boscher, C.; Dennis, J.W.; Nabi, I.R. Glycosylation, galectins and cellular signaling. Curr. Opin. Cell Biol. 2011, 23, 383–392. [Google Scholar] [CrossRef]
- Satelli, A.; Rao, U.S. Galectin-1 is silenced by promoter hypermethylation and its re-expression induces apoptosis in human colorectal cancer cells. Cancer Lett. 2011, 301, 38–46. [Google Scholar] [CrossRef]
- Juszczynski, P.; Rodig, S.J.; Ouyang, J.; O’Donnell, E.; Takeyama, K.; Mlynarski, W.; Mycko, K.; Szczepanski, T.; Gaworczyk, A.; Krivtsov, A.; et al. MLL-rearranged B lymphoblastic leukemias selectively express the immunoregulatory carbohydrate-binding protein galectin-1. Clin. Cancer Res. 2010, 16, 2122–2130. [Google Scholar] [CrossRef]
- Newlaczyl, A.U.; Yu, L.G. Galectin-3—A jack-of-all-trades in cancer. Cancer Lett. 2011, 313, 123–128. [Google Scholar] [CrossRef]
- Ahmed, H.; Banerjee, P.P.; Vasta, G.R. Differential expression of galectins in normal, benign and malignant prostate epithelial cells: Silencing of galectin-3 expression in prostate cancer by its promoter methylation. Biochem. Biophys. Res. Commun. 2007, 358, 241–246. [Google Scholar] [CrossRef]
- Ahmed, H.; Cappello, F.; Rodolico, V.; Vasta, G.R. Evidence of heavy methylation in the galectin 3 promoter in early stages of prostate adenocarcinoma: Development and validation of a methylated marker for early diagnosis of prostate cancer. Transl. Oncol. 2009, 2, 146–156. [Google Scholar] [CrossRef]
- Keller, S.; Angrisano, T.; Florio, E.; Pero, R.; Decaussin-Petrucci, M.; Troncone, G.; Capasso, M.; Lembo, F.; Fusco, A.; Chiariotti, L. DNA methylation state of the galectin-3 gene represents a potential new marker of thyroid malignancy. Oncol. Lett. 2013, 6, 86–90. [Google Scholar]
- Ben Mahmoud, L.K.; Arfaoui, A.; Khiari, M.; Chaar, I.; El Amine, O.; Ben Hmida, A.M.; Gharbi, L.; Mzabi, S.R.; Bouraoui, S. Loss of galectin-3 expression in mucinous colorectal carcinomas is associated with 5’CpG island methylation in Tunisian patients. Appl. Immunohistochem. Mol. Morphol. 2011, 19, 258–265. [Google Scholar]
- Ruebel, K.H.; Jin, L.; Qian, X.; Scheithauer, B.W.; Kovacs, K.; Nakamura, N.; Zhang, H.; Raz, A.; Lloyd, R.V. Effects of DNA methylation on galectin-3 expression in pituitary tumors. Cancer Res. 2005, 65, 1136–1140. [Google Scholar] [CrossRef]
- Kim, S.J.; Hwang, J.A.; Ro, J.Y.; Lee, Y.S.; Chun, K.H. Galectin-7 is epigenetically-regulated tumor suppressor in gastric cancer. Oncotarget 2013, 4, 1461–1471. [Google Scholar]
- Demers, M.; Couillard, J.; Giglia-Mari, G.; Magnaldo, T.; St Pierre, Y. Increased galectin-7 gene expression in lymphoma cells is under the control of DNA methylation. Biochem. Biophys. Res. Commun. 2009, 387, 425–429. [Google Scholar] [CrossRef]
- Isshiki, S.; Kudo, T.; Nishihara, S.; Ikehara, Y.; Togayachi, A.; Furuya, A.; Shitara, K.; Kubota, T.; Watanabe, M.; Kitajima, M.; et al. Cloning, expression, and characterization of a novel UDP-galactose: β-N-acetylglucosamine β1,3-galactosyltransferase (β3Gal-T5) responsible for synthesis of type 1 chain in colorectal and pancreatic epithelia and tumor cells derived therefrom. J. Biol. Chem. 1999, 274, 12499–12507. [Google Scholar] [CrossRef]
- Lin, C.H.; Fan, Y.Y.; Chen, Y.Y.; Wang, S.H.; Chen, C.I.; Yu, L.C.; Khoo, K.H. Enhanced expression of beta 3-galactosyltransferase 5 activity is sufficient to induce in vivo synthesis of extended type 1 chains on lactosylceramides of selected human colonic carcinoma cell lines. Glycobiology 2009, 19, 418–427. [Google Scholar]
- Mare, L.; Trinchera, M. Comparative analysis of retroviral and native promoters driving expression of beta1,3-galactosyltransferase beta3Gal-T5 in human and mouse tissues. J. Biol. Chem. 2007, 282, 49–57. [Google Scholar] [CrossRef]
- Isshiki, S.; Togayachi, A.; Kudo, T.; Nishihara, S.; Watanabe, M.; Kubota, T.; Kitajima, M.; Shiraishi, N.; Sasaki, K.; Andoh, T.; et al. Lewis type 1 antigen synthase (beta3Gal-T5) is transcriptionally regulated by homeoproteins. J. Biol. Chem. 2003, 278, 36611–36620. [Google Scholar] [CrossRef]
- Dunn, C.A.; Medstrand, P.; Mager, D.L. An endogenous retroviral long terminal repeat is the dominant promoter for human beta1,3-galactosyltransferase 5 in the colon. Proc. Natl. Acad. Sci. USA 2003, 100, 12841–12846. [Google Scholar] [CrossRef]
- Dunn, C.A.; van de Lagemaat, L.N.; Baillie, G.J.; Mager, D.L. Endogenous retrovirus long terminal repeats as ready-to-use mobile promoters: The case of primate beta3GAL-T5. Gene 2005, 364, 2–12. [Google Scholar] [CrossRef]
- Mare, L.; Trinchera, M. Suppression of β1,3galactosyltransferase β3Gal-T5 in cancer cells reduces sialyl-Lewis a and enhances poly N-acetyllactosamines and sialyl-Lewis x on O-glycans. Eur. J. Biochem. 2004, 271, 186–194. [Google Scholar] [CrossRef]
- Salvini, R.; Bardoni, A.; Valli, M.; Trinchera, M. Beta 1,3-Galactosyltransferase beta 3Gal-T5 acts on the GlcNAcbeta 1-->3Galbeta 1-->4GlcNAcbeta 1-->R sugar chains of carcinoembryonic antigen and other N-linked glycoproteins and is down-regulated in colon adenocarcinomas. J. Biol. Chem. 2001, 276, 3564–3573. [Google Scholar]
- Caretti, G.; Salsi, V.; Vecchi, C.; Imbriano, C.; Mantovani, R. Dynamic recruitment of NF-Y and histone acetyltransferases on cell-cycle promoters. J. Biol. Chem. 2003, 278, 30435–30440. [Google Scholar]
- Caretti, A.; Sirchia, S.M.; Tabano, S.; Zulueta, A.; Dall’Olio, F.; Trinchera, M. DNA methylation and histone modifications modulate the β1,3 galactosyltransferase β3Gal-T5 native promoter in cancer cells. Int. J. Biochem. Cell. Biol. 2012, 44, 84–90. [Google Scholar] [CrossRef]
- Zulueta, A.; Caretti, A.; Signorelli, P.; Dall’olio, F.; Trinchera, M. Transcriptional control of the B3GALT5 gene by a retroviral promoter and methylation of distant regulatory elements. FASEB J. 2014, 28, 946–955. [Google Scholar] [CrossRef]
- Aran, D.; Sabato, S.; Hellman, A. DNA methylation of distal regulatory sites characterizes dysregulation of cancer genes. Genome Biol. 2013, 14, R21. [Google Scholar] [CrossRef]
- Terraneo, L.; Avagliano, L.; Caretti, A.; Bianciardi, P.; Tosi, D.; Bulfamante, G.P.; Samaja, M.; Trinchera, M. Expression of carbohydrate-antigen sialyl-Lewis a on colon cancer cells promotes xenograft growth and angiogenesis in nude mice. Int. J. Biochem. Cell. Biol. 2013, 45, 2796–2800. [Google Scholar] [CrossRef]
- Mare, L.; Caretti, A.; Albertini, R.; Trinchera, M. CA19.9 antigen circulating in the serum of colon cancer patients: Where is it from? Int. J. Biochem. Cell. Biol. 2013, 45, 792–797. [Google Scholar] [CrossRef]
- Chachadi, V.B.; Ali, M.F.; Cheng, P.W. Prostatic cell-specific regulation of the synthesis of MUC1-associated sialyl Lewis a. PLoS One 2013, 8, e57416. [Google Scholar] [CrossRef]
© 2014 by the authors; licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution license (http://creativecommons.org/licenses/by/3.0/).
Share and Cite
Trinchera, M.; Zulueta, A.; Caretti, A.; Dall'Olio, F. Control of Glycosylation-Related Genes by DNA Methylation: the Intriguing Case of the B3GALT5 Gene and Its Distinct Promoters. Biology 2014, 3, 484-497. https://doi.org/10.3390/biology3030484
Trinchera M, Zulueta A, Caretti A, Dall'Olio F. Control of Glycosylation-Related Genes by DNA Methylation: the Intriguing Case of the B3GALT5 Gene and Its Distinct Promoters. Biology. 2014; 3(3):484-497. https://doi.org/10.3390/biology3030484
Chicago/Turabian StyleTrinchera, Marco, Aida Zulueta, Anna Caretti, and Fabio Dall'Olio. 2014. "Control of Glycosylation-Related Genes by DNA Methylation: the Intriguing Case of the B3GALT5 Gene and Its Distinct Promoters" Biology 3, no. 3: 484-497. https://doi.org/10.3390/biology3030484
APA StyleTrinchera, M., Zulueta, A., Caretti, A., & Dall'Olio, F. (2014). Control of Glycosylation-Related Genes by DNA Methylation: the Intriguing Case of the B3GALT5 Gene and Its Distinct Promoters. Biology, 3(3), 484-497. https://doi.org/10.3390/biology3030484

