Hybrid Atypical Enteropathogenic and Extraintestinal Escherichia coli (aEPEC/ExPEC) BA1250 Strain: A Draft Genome
Abstract
:1. Introduction
2. Results and Discussion
2.1. Overview of BA1250 Draft Genome Assembly
2.2. Plasmid Content
2.3. Phylogenetic Analyses
2.4. BA1250: A Hybrid Strain
3. Materials and Methods
3.1. Strain Isolation and Identification
3.2. DNA Extraction, Sequencing Library, and Read Filtering
3.3. Genome Assembly and Annotation
3.4. Plasmid Identification
3.5. Phylogenetic Analysis
3.6. Pathogenic Island Predictiom
4. Conclusions
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Conflicts of Interest
References
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Feature | Value |
---|---|
Contigs | 151 |
GC Content (%) | 50.56 |
Contig L50 | 9 |
Contig N50 | 129,195 |
Genome length (bp) | 4,964,536 |
Protein coding sequences (CDS) | 4969 |
Annotated genes | 4717 |
Transfer RNA (tRNA) | 87 |
Ribosomal RNA (rRNA) | 12 |
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Munhoz, D.D.; Santos, F.F.; Mitsunari, T.; Schüroff, P.A.; Elias, W.P.; Carvalho, E.; Piazza, R.M.F. Hybrid Atypical Enteropathogenic and Extraintestinal Escherichia coli (aEPEC/ExPEC) BA1250 Strain: A Draft Genome. Pathogens 2021, 10, 475. https://doi.org/10.3390/pathogens10040475
Munhoz DD, Santos FF, Mitsunari T, Schüroff PA, Elias WP, Carvalho E, Piazza RMF. Hybrid Atypical Enteropathogenic and Extraintestinal Escherichia coli (aEPEC/ExPEC) BA1250 Strain: A Draft Genome. Pathogens. 2021; 10(4):475. https://doi.org/10.3390/pathogens10040475
Chicago/Turabian StyleMunhoz, Danielle D., Fernanda F. Santos, Thais Mitsunari, Paulo A. Schüroff, Waldir P. Elias, Eneas Carvalho, and Roxane M. F. Piazza. 2021. "Hybrid Atypical Enteropathogenic and Extraintestinal Escherichia coli (aEPEC/ExPEC) BA1250 Strain: A Draft Genome" Pathogens 10, no. 4: 475. https://doi.org/10.3390/pathogens10040475