Luticola tenera sp. nov. (Diadesmidaceae, Naviculales)—A New Diatom from the Soil of the State Nature Reserve “Bastak” (Jewish Autonomous Region, Russia)
Abstract
:1. Introduction
2. Materials and Methods
2.1. Sampling and Culture Conditions
2.2. Microscopy
2.3. Mating Experiments
2.4. DNA Extraction, Amplification, and Sequencing
2.5. Alignment and Dataset
2.6. Phylogenetic Analysis
3. Results
3.1. Taxonomic Analysis
3.2. Phylogenetic Analyses
3.3. Sexual Reproduction
4. Discussion
4.1. Morphology
4.2. Phylogeny
4.3. Sexual Reproduction
5. Conclusions
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
- Guiry, M.D.; Guiry, G.M. AlgaeBase. World-Wide Electronic Publication, National University of Ireland, Galway. Available online: https://www.algaebase.org (accessed on 23 July 2023).
- Urbani, R.; Sist, P.; Pletikapić, G.; Radić, T.M.; Svetličić, V.; Žutic, V.; Urbani, R.; Sist, P.; Pletikapić, G.; Radić, T.M.; et al. Diatom Polysaccharides: Extracellular Production, Isolation and Molecular Characterization. In The Complex World of Polysaccharides; Karunaratne, D.N., Ed.; IntechOpen: London, UK, 2012; ISBN 978-953-51-0819-1. [Google Scholar] [CrossRef]
- Goiris, K.; Muylaert, K.; Voorspoels, S.; Noten, B.; De Paepe, D.; Baart, E.; De Cooman, L. Detection of flavonoids in microalgae from different evolutionary lineages. J. Phycol. 2014, 50, 483–492. [Google Scholar] [CrossRef] [PubMed]
- Kuczynska, P.; Jemiola-Rzeminska, M.; Strzalka, K. Photosynthetic Pigments in Diatoms. Mar. Drugs 2015, 13, 5847–5881. [Google Scholar] [CrossRef] [PubMed]
- Kezlya, E.; Maltsev, Y.; Genkal, S.; Krivova, Z.; Kulikovskiy, M. Phylogeny and Fatty Acid Profiles of New Pinnularia (Bacillariophyta) Species from Soils of Vietnam. Cells 2022, 11, 2446. [Google Scholar] [CrossRef] [PubMed]
- Roychoudhury, P.; Bose, R.; Dąbek, P.; Witkowski, A. Photonic Nano-/Microstructured Diatom Based Biosilica in Metal Modification and Removal—A Review. Materials 2022, 15, 6597. [Google Scholar] [CrossRef]
- Round, F.E.; Crawford, R.M.; Mann, D.G. The Diatoms: Biology and Morphology of the Genera; Cambridge University Press: Cambridge, UK, 1990; 747p, ISBN 978-0-521-36318-1. [Google Scholar]
- Levkov, Z.; Metzeltin, D.; Pavlov, A. Luticola and Luticolopsis. In Diatoms of Europe; Lange-Bertalot, H., Ed.; Koeltz Scientific c Books: Koenigstein, Germany, 2013; Volume 7. [Google Scholar]
- Chattová, B.; Lebouvier, M.; Haan, M.D.; de Vijver, B.V. The Genus Luticola (Bacillariophyta) on Ile Amsterdam and Ile Saint-Paul (Southern Indian Ocean) with the Description of Two New Species. Eur. J. Taxon. 2017. [Google Scholar] [CrossRef]
- Glushchenko, A.M.; Kulikovskiy, M.S.; Kociolek, J.P. New and Interesting Species from the Genus Luticola (Bacillariophyceae) in Waterbodies of Southeastern Asia. Nova Hedwig. 2018, 146, 157–173. [Google Scholar] [CrossRef]
- Straube, A.; Tremarin, P.I.; Ludwig, T.A.V. Species of Luticola D.G. Mann (Bacillariophyceae) in the Atlantic Forest Rivers from Southern Brazil. Diatom Res. 2017, 32, 417–437. [Google Scholar] [CrossRef]
- Bąk, M.; Kryk, A.; Peszek, Ł.; Kociolek, J.P.; Bemiasa, J.; Bemanaja, E. New and Interesting Luticola Species (Bacillariophyta) from the Mangroves of Nosy Be Island, NW Madagascar. Oceanol. Hydrobiol. Stud. 2019, 48, 13–22. [Google Scholar] [CrossRef]
- Noga, T.; Rybak, M. A New Site for Luticola vanheurckii Van de Vijver & Levkov (Bacillariophyta)—The Second Record from Europe. Biologia 2019, 74, 149–152. [Google Scholar] [CrossRef]
- Peszek, Ł.; Rybak, M.; Lange-Bertalot, H.; Kociolek, J.P.; Witkowski, A. Three New Luticola D.G.Mann (Bacillariophyta) Species from Rapa Nui (Easter Island) Found in Terrestrial Diatom Assemblages Dominated by Widely Distributed Taxa. PeerJ 2021, 9, e11142. [Google Scholar] [CrossRef]
- Simonato, J.; Kociolek, J.P.; Sala, S.E.; Díaz, Y.P.; Núñez-Avellaneda, M. Three New Luticola Species from the Andean-Amazonian Transition in Colombia: Taxonomy, Morphology and Preliminary Considerations of the Biogeography of the Genus. Diatom Res. 2020, 35, 377–393. [Google Scholar] [CrossRef]
- Hindáková, A.; Noga, T. Luticola rojkoviensis sp. nov. (Bacillariophyta), a New Terrestrial Diatom from Central Slovakia. Fottea 2021, 21, 34–43. [Google Scholar] [CrossRef]
- Rybak, M.; Kochman-Kędziora, N.; Peszek, Ł. Description of Four New Terrestrial Diatom Species from Luticola and Microcostatus Genera from South Africa. PhytoKeys 2021, 182, 1–26. [Google Scholar] [CrossRef] [PubMed]
- Bakieva, G.R.; Khaibullina, L.S.; Gaisina, L.A.; Kabirov, R.R. Ecological-Floristic Analysis of Soil Algae and Cyanobacteria on the Tra-Tau and Yurak-Tau Mounts, Bashkiria. Eurasian Soil Sc. 2012, 45, 873–881. [Google Scholar] [CrossRef]
- Buevich, T.A.; Chudaev, D.A.; Gololobova, M.A. K Izucheniyu Pochvennyh Diatomovyh Vodoroslej Zvenigorodskoj Biologicheskoj Stancii MGU [On the Study of Soil Diatoms at the Zvenigorod Biological Station of Moscow State University]; Byulleten’ Moskovskogo Obshchestva Ispytatelej Prirody: Moscow, Russia, 2018; Volume 123, pp. 43–49. (In Russian) [Google Scholar]
- Bagmet, V.B.; Kazarin, V.M. Predvaritel’nye dannye po flore Bacillariophyta v pochvah Smirnyhovskogo rajona (ostrov Sahalin, Rossiya) [Preliminary data on the flora of Bacillariophyta in the soils of the Smirnykhovsky district (Sakhalin Island, Russia)]. Komar. Chteniya 2021, 69, 130–142. (In Russian) [Google Scholar] [CrossRef]
- Wetzel, C.; Van de Vijver, B.; Ector, L. Luticola deniseae sp. nov. A New Epizoic Diatom from the Rio Negro (Amazon Hydrographic Basin). Vie Milieu-Life Environ. 2009, 60, 177–184. [Google Scholar]
- Glushchenko, A.M.; Kulikovskiy, M.S. Vidy Roda Luticola (Bacillariophyceae) V Vodoemah Laosa I V’etnama [Species of the genus Luticola in waterbodies of Laos and Vietnam]. Bot. Z. 2015, 100, 799–804. (In Russian) [Google Scholar] [CrossRef]
- Zidarova, R.; Levkov, Z.; Van de Vijver, B. Four New Luticola Taxa (Bacillariophyta) from Maritime Antarctica. Phytotaxa 2014, 170, 155–168. [Google Scholar] [CrossRef]
- Kohler, T.J.; Kopalová, K.; Van de Vijver, B.; Kociolek, J.P. The Genus Luticola D.G.Mann (Bacillariophyta) from the McMurdo Sound Region, Antarctica, with the Description of Four New Species. Phytotaxa 2015, 208, 103–134. [Google Scholar] [CrossRef]
- Kociolek, J.P.; Kopalová, K.; Hamsher, S.E.; Kohler, T.J.; Van de Vijver, B.; Convey, P.; McKnight, D.M. Freshwater Diatom Biogeography and the Genus Luticola: An Extreme Case of Endemism in Antarctica. Polar Biol. 2017, 40, 1185–1196. [Google Scholar] [CrossRef]
- Genkal, S.I.; Elizarova, V.A. Novye dannye po izmeneniyu vodorosli Diatoma elongatum Ag. v kul’ture [New data on changes in the alga Diatoma elongatum Ag. in culture]. Biol. Vnutr. Vod 1989, 81, 32–36. (In Russian) [Google Scholar]
- Mitrofanova, E.Y.; Tret’yakova, E.I. Teratologicheskie formy diatomovyh vodoroslej v al’goflore Teleckogo ozera (Russkij Altaj) [Teratological forms of diatoms in the algal flora of Lake Teletskoye (Russian Altai)]. Voda: Him. Ekol. 2013, 10, 113–119. (In Russian) [Google Scholar]
- Kosova, A.L.; Denisov, D.B. Diatomovye kompleksy donnyh otlozhenij oz. Shchuch’e (Hibinskij gornyj massiv, Kol’skij p-ov) [Diatom assemblages of the lake Shchuchye bottom sediments (Khibiny mountain group, Kola Peninsula)]. Arct. Environ. Res. 2017, 17, 212–221. (In Russian) [Google Scholar] [CrossRef]
- Poulíčková, A.; Mann, D.G. Diatom Sexual Reproduction and Life Cycles. In Diatoms: Fundamentals and Applications; Seckbach, J., Gordon, R., Eds.; John Wiley & Sons, Ltd.: Hoboken, NJ, USA, 2019; pp. 245–272. ISBN 978-1-119-37074-1. [Google Scholar] [CrossRef]
- Bagmet, V.B.; Abdullin, S.R.; Mazina, S.E.; Nikulin, A.Y.; Nikulin, V.Y.; Gontcharov, A.A. Life cycle of Nitzschia palea (Kutzing) W. Smith (Bacillariophyta). Russ. J. Dev. Biol. 2020, 51, 106–114. [Google Scholar] [CrossRef]
- Poulíčková, A. Morphology, Cytology and Sexual Reproduction in the Aerophytic Cave Diatom Luticola dismutica (Bacillariophyceae). Preslia 2008, 80, 87–99. [Google Scholar]
- Kuzyakhmetov, G.G.; Dubovik, I.E. Metody Izucheniya Pochvennyh Vodorosley [Methods for Studying Soil Algae]; Izdatelstvo RIO BashGU: Ufa, Russia, 2001. (In Russian) [Google Scholar]
- Andersen, R.A. Algal Culturing Techniques; Elsevier Academic Press: Burlington, MA, USA, 2005; ISBN 0-12-088426-7. [Google Scholar]
- Mann, D.G.; Chepurnov, V.A. What Have the Romans Ever Done for Us? The Past and Future Contribution of Culture Studies to Diatom Systematics. Nova Hedwig. 2004, 79, 237–291. [Google Scholar] [CrossRef]
- Poulíčková, A.; Mayama, S.; Chepurnov, V.A.; Mann, D.G. Heterothallic auxosporulation, incunabula and perizonium in Pinnularia (Bacillariophyceae). Eur. J. Phycol. 2007, 42, 367–390. [Google Scholar] [CrossRef]
- Poulíčková, A.; Mann, D.G. Sexual reproduction in Navicula cryptocephala (Bacillariophyceae). J. Phycol. 2006, 42, 872–886. [Google Scholar] [CrossRef]
- Abdullin, S.R.; Nikulin, A.Y.; Bagmet, V.B.; Nikulin, V.Y.; Gontcharov, A.A. New cyanobacterium Aliterella vladivostokensis sp. nov. (Aliterellaceae, Chroococcidiopsidales), isolated from temperate monsoon climate zone (Vladivostok, Russia). Phytotaxa 2021, 527, 221–233. [Google Scholar] [CrossRef]
- Daugbjerg, N.; Andersen, R.A. Phylogenetic analyses of the rbcL sequences from haptophytes and heterokont algae suggest their chloroplasts are unrelated. Mol. Biol. Evol. 1997, 14, 1242–1251. [Google Scholar] [CrossRef]
- Bonfield, J.K.; Smith, K.F.; Staden, R. A new DNA sequence assembly program. Nucleic Acids Res. 1995, 23, 4992–4999. [Google Scholar] [CrossRef]
- Galtier, N.; Gouy, M.; Gautier, C. SEAVIEW and PHYLO_WIN: Two graphic tools for sequence alignment and molecular phylogeny. Bioinformatics 1996, 12, 543–548. [Google Scholar] [CrossRef] [PubMed]
- Swofford, D.L. PAUP*: Phylogenetic Analysis Using Parsimony (*and Other Methods), Version 4.0b10; Sinauer Associates: Sunderland, MA, USA, 2002. [Google Scholar] [CrossRef]
- Huelsenbeck, J.P.; Ronquist, F. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 2001, 17, 754–755. [Google Scholar] [CrossRef]
- Akaike, H. A New look at the statistical model identification. IEEE Trans. Autom. Contr. 1974, 19, 716–723. [Google Scholar] [CrossRef]
- Darriba, D.; Taboada, G.L.; Doallo, R.; Posada, D. JModelTest 2: More models, new heuristics and parallel computing. Nat. Methods 2012, 9, 772. [Google Scholar] [CrossRef] [PubMed]
- Rambaut, A.; Drummond, A.J.; Xie, D.; Baele, G.; Suchard, M.A. Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7. Syst. Biol. 2018, 67, 901–904. [Google Scholar] [CrossRef]
- Stamatakis, A.; Hoover, P.; Rougemont, J. A rapid bootstrap algorithm for the RAxML web servers. Syst. Biol. 2008, 57, 758–771. [Google Scholar] [CrossRef]
- Kozlov, A.M.; Darriba, D.; Flouri, T.; Morel, B.; Stamatakis, A. RAxML-NG: A fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference. Bioinformatics 2019, 35, 4453–4455. [Google Scholar] [CrossRef] [PubMed]
- Geitler, L. Der Formwechsel der pennaten Diatomeen (Kieselalgen). Arch. Fur Protistenkd. 1932, 78, 1–226. (In German) [Google Scholar]
- Davidovich, N.A.; Davidovich, O.I. Reproduktivnaya Biologiya Diatomovykh Vodorosley [Reproductive Biology of Diatoms]; LLC «Arial»: Simferopol, Russia, 2022. (In Russian) [Google Scholar]
- Lowe, R.L.; Furey, P.C.; Ress, J.A.; Johansen, J.R. Diatom Biodiversity and Distribution on Wetwalls in Great Smoky Mountains National Park. Southeast. Nat. 2007, 6, 135–152. [Google Scholar] [CrossRef]
- Solak, C.N.; Cocquyt, C.; Hamilton, P.B.; Holmes, J.; Yilmaz, E.; Kesbiç, I. A new diatom (Surirellaceae: Bacillariophyta) species—Surirella caljoniana sp. nov.—In Göydün Spring, Sivas in Eastern Anatolia, Republic of Türkiye. Phytotaxa 2023, 595, 99–108. [Google Scholar] [CrossRef]
- Van de Vijver, B.; Gogne, B.; Hoogsteyns, G.; Velde, L.V.D.; Vlaminck, L.; Kabota, S.A.; Teunen, L.; Wetzel, C.E. Planothidium africanum sp. nov., a New Freshwater Diatom (Bacillariophyta) Species from Tanzania. Phytotaxa 2023, 585, 281–286. [Google Scholar] [CrossRef]
- Peszek, Ł.; Robinson, C.T.; Rybak, M.; Kawecka, B. Orthoseira helvetica sp. nov.—A New Diatom (Bacillariophyceae) from the Swiss Alps. Diatom Res. 2023. [Google Scholar] [CrossRef]
- Mann, D.G.; Trobajo, R.; Sato, S.; Li, C.; Witkowski, A.; Rimet, F.; Ashworth, M.P.; Hollands, R.M.; Theriot, E.C. Ripe for reassessment: A synthesis of available molecular data for the speciose diatom family Bacillariaceae. Mol. Phylogenetics Evol. 2021, 158, 106985. [Google Scholar] [CrossRef] [PubMed]
- Glushchenko, A.; Kezlya, E.; Maltsev, Y.; Genkal, S.; Kociolek, J.P.; Kulikovskiy, M. Description of the Soil Diatom Sellaphora terrestris sp. nov. (Bacillariophyceae, Sellaphoraceae) from Vietnam, with Remarks on the Phylogeny and Taxonomy of Sellaphora and Systematic Position of Microcostatus. Plants 2022, 11, 2148. [Google Scholar] [CrossRef]
- Kulikovskiy, M.S.; Maltsev, Y.I.; Glushchenko, A.M.; Gusev, E.S.; Kapustin, D.A.; Kuznetsova, I.V.; Frolova, L.; Kociolek, J.P. Preliminary Molecular Phylogeny of the Diatom Genus Nupela with the Description of a New Species and Consideration of the Interrelationships of Taxa in the Suborder Neidiineae D.G. Mann Sensu E.J. Cox. Fottea 2020, 20, 192–204. [Google Scholar] [CrossRef]
- Davidovich, N.A.; Davidovich, O.I.; Witkowski, A.; Li, C.; Dabek, P.; Mann, D.G.; Zgłobicka, I.; Kurzydłowski, K.J.; Gusev, E.; Górecka, E.; et al. Sexual Reproduction in Schizostauron (Bacillariophyta) and a Preliminary Phylogeny of the Genus. Phycologia 2017, 56, 77–93. [Google Scholar] [CrossRef]
- Mizuno, M. Sexual Reproduction and Auxospore Formation of the Marine Monoraphid Diatom Cocconeis pellucida. Diatom Res. 1998, 13, 103–112. [Google Scholar] [CrossRef]
- Chepurnov, V.A.; Mann, D.G. Variation in the Sexual Behaviour of Natural Clones of Achnanthes longipes (Bacillariophyta). Eur. J. Phycol. 1997, 32, 147–154. [Google Scholar] [CrossRef]
- Chepurnov, V.; Mann, D. Variation in the Sexual Behaviour of Achnanthes longipes (Bacillariophyta). II. Inbred Monoecious Lineages. Eur. J. Phycol. 1999, 34, 1–11. [Google Scholar] [CrossRef]
- Chepurnov, V.; Mann, D. Variation in the Sexual Behaviour of Achnanthes longipes (Bacillariophyta). III. Progeny of Crosses between Monoecious and Unisexual Clones. Eur. J. Phycol. 2000, 35, 213–223. [Google Scholar] [CrossRef]
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Bagmet, V.B.; Abdullin, S.R.; Nikulin, A.Y.; Nikulin, V.Y.; Gontcharov, A.A. Luticola tenera sp. nov. (Diadesmidaceae, Naviculales)—A New Diatom from the Soil of the State Nature Reserve “Bastak” (Jewish Autonomous Region, Russia). Life 2023, 13, 1937. https://doi.org/10.3390/life13091937
Bagmet VB, Abdullin SR, Nikulin AY, Nikulin VY, Gontcharov AA. Luticola tenera sp. nov. (Diadesmidaceae, Naviculales)—A New Diatom from the Soil of the State Nature Reserve “Bastak” (Jewish Autonomous Region, Russia). Life. 2023; 13(9):1937. https://doi.org/10.3390/life13091937
Chicago/Turabian StyleBagmet, Veronika B., Shamil R. Abdullin, Arthur Yu. Nikulin, Vyacheslav Yu. Nikulin, and Andrey A. Gontcharov. 2023. "Luticola tenera sp. nov. (Diadesmidaceae, Naviculales)—A New Diatom from the Soil of the State Nature Reserve “Bastak” (Jewish Autonomous Region, Russia)" Life 13, no. 9: 1937. https://doi.org/10.3390/life13091937