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Agronomy 2016, 6(2), 28; doi:10.3390/agronomy6020028

Development and Integration of an SSR-Based Molecular Identity Database into Sugarcane Breeding Program

United States Department of Agriculture-Agricultural Research Service, Southeast Area, Sugarcane Research Unit, 5883 USDA Road, Houma, LA 70360, USA
Academic Editor: Peter Langridge
Received: 14 March 2016 / Revised: 19 April 2016 / Accepted: 20 April 2016 / Published: 25 April 2016
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Abstract

Sugarcane breeding is very difficult and it takes 12 to 14 years to develop a new cultivar for commercial production. This is because sugarcane varieties are highly polyploid, inter-specific hybrids with 100 to 130 chromosomes that may vary across geographical areas. Other obstacles/constraints include the small size of flowers that may not synchronize but may self-pollinate, difficulty in distinguishing hybrids from self progenies, extreme (G × E) interactive effect, and potential variety mis-identification during vegetative propagation and varietal exchange. To help cane breeders circumvent these constraints, a simple sequence repeats (SSR)-based molecular identity database has been developed at the United States Department of Agriculture-Agricultural Research Service, Sugarcane Research Unit in Houma, LA. Since 2005, approximately 2000 molecular identities have been constructed for clones of sugarcane and related Saccharum species that cover geographical areas including Argentina, Australia, Bangladesh, China, Colombia, India, Mexico, Pakistan, South Africa, Thailand, USA (Louisiana, Florida, Texas, and Hawaii), and Venezuela. The molecular identity database is updated annually and has been utilized to: (1) provide molecular descriptors to newly registered cultivars; (2) identify in a timely fashion any mislabeled or unidentifiable clones from cross parents and field evaluation plots; (3) develop de novo clones of energy cane with S. spontaneum cytoplasm; (4) provide clone-specific fingerprint information for assessing cross quality and paternity of polycross; (5) determine genetic relatedness of parental clones; (6) select F1 hybrids from (elite × wild) or (wild × elite) crosses; and (7) investigate the inheritance of SSR markers in sugarcane. The integration of the molecular identity database into the sugarcane breeding program may improve the overall efficacy of cultivar development and commercialization. View Full-Text
Keywords: sugarcane breeding; SSR; molecular identity database sugarcane breeding; SSR; molecular identity database
This is an open access article distributed under the Creative Commons Attribution License which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. (CC BY 4.0).

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Pan, Y.-B. Development and Integration of an SSR-Based Molecular Identity Database into Sugarcane Breeding Program. Agronomy 2016, 6, 28.

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