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Article

A Possible Role of Copernicus Sentinel-2 Data to Support Common Agricultural Policy Controls in Agriculture

by
Filippo Sarvia
1,
Elena Xausa
2,
Samuele De Petris
1,
Gianluca Cantamessa
2 and
Enrico Borgogno-Mondino
1,*
1
Department of Agricultural, Forest and Food Sciences, University of Turin, L.go Braccini 2, 10095 Grugliasco, Italy
2
Agenzia Regionale Piemontese per le Erogazioni in Agricoltura, Via Bogino 23, 10123 Torino, Italy
*
Author to whom correspondence should be addressed.
Agronomy 2021, 11(1), 110; https://doi.org/10.3390/agronomy11010110
Submission received: 17 December 2020 / Revised: 4 January 2021 / Accepted: 5 January 2021 / Published: 8 January 2021
(This article belongs to the Special Issue Machine Learning Applications in Digital Agriculture)

Abstract

:
Farmers that intend to access Common Agricultural Policy (CAP) contributions must submit an application to the territorially competent Paying Agencies (PA). Agencies are called to verify consistency of CAP contributions requirements through ground campaigns. Recently, EU regulation (N. 746/2018) proposed an alternative methodology to control CAP applications based on Earth Observation data. Accordingly, this work was aimed at designing and implementing a prototype of service based on Copernicus Sentinel-2 (S2) data for the classification of soybean, corn, wheat, rice, and meadow crops. The approach relies on the classification of S2 NDVI time-series (TS) by “user-friendly” supervised classification algorithms: Minimum Distance (MD) and Random Forest (RF). The study area was located in the Vercelli province (NW Italy), which represents a strategic agricultural area in the Piemonte region. Crop classes separability proved to be a key factor during the classification process. Confusion matrices were generated with respect to ground checks (GCs); they showed a high Overall Accuracy (>80%) for both MD and RF approaches. With respect to MD and RF, a new raster layer was generated (hereinafter called Controls Map layer), mapping four levels of classification occurrences, useful for administrative procedures required by PA. The Control Map layer highlighted that only the eight percent of CAP 2019 applications appeared to be critical in terms of consistency between farmers’ declarations and classification results. Only for these ones, a GC was warmly suggested, while the 12% must be desirable and the 80% was not required. This information alone suggested that the proposed methodology is able to optimize GCs, making possible to focus ground checks on a limited number of fields, thus determining an economic saving for PA and/or a more effective strategy of controls.

1. Introduction

1.1. CAP and Contributions to Agriculture in the EU

The Common Agricultural Policy (CAP) represents the set of rules issued by the European Union (EU) for the regulation of the agricultural sector, with the aim of pursuing its harmonized development within all the Member States. CAP, as set out in Art. 39 of the Treaty on the Functioning of the European Union (TFEU), aims at increasing agricultural productivity [1], ensuring standards of living for the agricultural community, stabilizing markets and guaranteeing the availability of supplies, without neglecting environmental sustainability, food safety, and animal welfare [2,3].
CAP is founded by EAGF (European Agricultural Guarantee Fund) and EAFRD (European Agricultural Fund for Rural Development), which finance the first and second pillar, respectively, within a general strategy that supports the main actions in agriculture. Additionally, other national and regional investments are possible from each Member Country, aimed at supporting peculiar and local interventions [4,5,6]. More specifically, CAP’s first pillar, supported by the EAGF fund, concerns the Common Organization of Markets (CMO) supporting farmers with direct payments, that rewards actions favoring markets stabilization, increasing of agricultural production, environmental sustainability, and providing fair support to the life standard of farmers. EU delegates to Member States the following mandatory actions: (a) definition and application of the basic payment scheme; (b) definition and application of young farmers payment scheme (<40 years old that have been working as farmers for less than five years); (c) greening interventions, that guarantee additional payments per area for those farmers implementing practices that generate environmental benefits (e.g., crop diversification, maintenance of existing permanent grasslands, and ecological focus areas). Additionally, other direct payments can be activated voluntarily by the Member States: (a) contributions for areas showing natural constraints/less favored areas; (b) small farmers; (c) coupled payments; (d) redistributive payments for first hectares.
CAP second pillar, supported by EAFRD and regional/national funds, promotes sustainable rural development. In particular the objectives are: fostering agricultural competitiveness, ensuring sustainable management of natural resources, climate action, and development of rural economies and communities [7]. Member States (or their regions) define multi-annual rural development programs, personalized and divided into different measures, which must respond to EU rural development policy. Table 1 shows the prospectus of CAP funds addressed to Italy in the 2014–2020 period [8].

1.2. Types of CAP Controls

Farmers that intend to access CAP contributions must apply to the territorially competent Paying Agency. Payment claims must provide precise and updated information regarding areal consistency and structural features of farm. As required by Art. 17 of Reg. (EU) n. 809/2014 [9], applications must be based on geospatial data. GSAA (Geo Spatial Aid Application) describe farm parcels information through a GIS-based (geographic information system) approach and can be managed by paying agencies through the Integrated Management and Control System (IACS). IACS, additionally, allows unambiguous identification of agricultural parcels, connection to digital databases and execution of systematic checks [10]. GSAA contains information about land use and size of parcels and location of the (eventual) ecological focus areas. IACS is used by Paying Agencies in order to verify applications compliance with requirements and it relies on administrative (AC) and spot checks (SC). AC is performed on 100% of applications and aims to automatically detect formal faults through informatics tools. In particular, AC are called to verify compliance with eligibility criteria and maintenance of long-term commitments; compliance with deadlines for submitting payment claims; completeness of supplied documentation; absence of other financing quotes through other EU schemes. SC are generally performed with reference to five percent of applications with the aim of checking truthfulness of declared area size, verifying eligibility criteria, and testing compliance with envisaged commitments and obligations. SC are generally operated by photo-interpretation of high resolution satellite images and/or, in specific and rare cases, by direct ground checks (GCs).

1.3. Remote Sensing and CAP Controls

Crop monitoring by Earth Observation (EO) satellites is a possible alternative methodology to SC and it was recently proposed by EU Reg. No. 809/2014 Art. 40 bis amended by EU Reg. No. 746/2018. The Italian Agency for Payments in Agriculture (AGEA), that represents the national agency for CAP application in Italy, was the first one (2018) to test a satellite-based monitoring system during a pilot project involving the Province of Foggia (SE-Italy). It was aimed at checking applications related to the Basic Payment and Small Farmers scheme (Title III and V, respectively, of EU Regulation no. 1307/2013).

1.4. Study Goals

Within this context, in 2019, the Piemonte Agency for Payments in Agriculture (ARPEA), in collaboration with the Department of Agricultural, Forest and Food Sciences (DISAFA) of the University of Turin and the Aerospace Logistics Technology Engineering Company (ALTEC), activated its own experimental phase. The project was addressed to calibrate deductions from remote sensing to fit the specific local agricultural context, that appeared to be significantly different from the one where the previously mentioned national experience was run. The aim of this work was to design and develop a prototype service for crop classification based on multitemporal Copernicus Sentinel data. In particular, research outcomes were: (a) reduction of the overall costs for controls related to GCs and related administrative procedures; (b) minimization of subjectivity affecting the photo-interpretation process; (c) a timely update of irregular GSAA by farmers in consequence of warning coming from the system. Definitely, the project was intended to replace and/or integrate SC as required by EU regulations. Nevertheless, the possibility of classifying main crops over the whole regional territory can also be useful to resolve contradictions between public administration and farmers that arise in various stages of the administrative procedure. With these premises, a pilot area was selected within the Province of Vercelli.

2. Materials and Methods

2.1. Study Area

Piemonte Region (NW–Italy) consists of 8 Provinces, each of them with peculiar geomorphological and climatic characteristics, which determine different agricultural landscapes with different crop vocation. The study area (AOI) corresponds to the flat part of the Vercelli province (Figure 1). It is about 2081 km2 and is entirely contained in a single Sentinel-2 (S2) tile. It is highly devoted to extensive agriculture with a prevalence of submerged crops (rice).

2.2. Monitored Crops and Related Agronomic Calendar

Currently, crop detection for AC is performed by photo-interpretation of aerial orthoimages with a time frequency of 3 years. Conversely, three VNIR (visible-NIR) high-resolution satellite image are photo-interpreted to support SC every year; in case of doubts, GCs are performed. Detection by satellite data is the expected (at least partially) alternative to this process. In this work, attention was paid to recognition of five crops: soybean, corn, wheat, rice, and meadow. The choice relies on requirements from the basic payment scheme (Title III of Reg. (EU) 1307/2013), from the optional coupled support, and from the payment for agricultural practices beneficial for climate and environment (Title IV).
In particular, soybeans and rice are eligible for receiving additional payments provided by the coupled support. For selected crops, correspondent agronomic calendars were available (Figure 2) and were used to support improve phenological interpretations.

2.3. Available Data

The following data were used for this study: (a) Copernicus Sentinel 2 data; (b) GSAA database for EU incentives under CAP 2019; (c) data from ground surveys carried out by ARPEA Piemonte technicians in the 2019 growing season.

2.3.1. Satellite Data

Availability of EO satellite images is currently large [11,12]. Nevertheless, not all data are suitable for agronomic applications. In particular, to detect and monitor crops, basic operational requirements are: (a) an adequate geometric resolution with respect to fields size; (b) high temporal resolution for phenological phases detection; (c) spectral bands sensitive to crop parameters (biomass, photosynthetic activity); (d) costs compatible with agronomic sector (possibly free of charge). The Sentinel 2 mission presents a nominal time resolution of 5 days (cloud cover dependent); images are supplied for free already calibrated in at-the-ground reflectance with a maximum geometric resolution of 10 m. These features make them certainly compatible with the purpose of this work. EU mission S2 is equipped with multispectral optical sensors capable of acquiring spectral bands in the range 400–2500 nm (from visible to medium infrared). S2 data are made available by the European Space Agency (ESA) through different web portals. The official one is the Sentinel Scientific Open Data Hub (ESA, https://scihub.copernicus.eu/). For this work, 53 S2 Level-2A images (tile 32TMR) were obtained covering AOI along the 2019 growing season. The single tile covers an area of 100 × 100 km2, is orthoprojected in the WGS84 UTM reference system. Level 2A products are supplied in at-the-ground reflectance (Bottom of the Atmosphere, BOA) and, consequently, they can be immediately used for terrestrial applications [13]. Technical characteristics of S2 Multi Spectral Instrument (MSI) sensor are shown in Table 2.
S2 data are supplied equipped of some auxiliary information. The most interesting one for this work was the SCL layer defining pixel quality according to a numerical coding as reported in Table 3.

2.3.2. Farmers’ Geospatial Data Applications

GSAA dataset is currently not accessible to all users. For this work, it was provided by ARPEA in vector format for the 2019 season. GSAA contains basic information about crops and in particular the declared crop type (Table 4). About 210,000 GSAA were collected within AOI.

2.3.3. Ground Surveys

A ground campaign was performed by ARPEA according to GCs’ standard in summer 2019 in order to validate remotely sensed deductions. GCs information were then georeferenced by Topcon GRS-1 (Topcon Positioning Italy Srl, Ancona, Italy) GNSS (Global Navigation Satellite System) receiver coupled with Mercury© (Mercury Systems, Inc., Andover, MN, USA) post-processing software [14]. During GCs, information about actual crop type was recorded. Moreover, some interviews were done to farmers to collect information about main agronomics operations (plowing, sowing, harvesting, mowing, flooding, and dry) they adopted. A total of 641 fields, covering about 1410 ha, were surveyed. Table 5 shows number and size of fields surveyed for each crop type.

2.4. Data Processing

The main conceptual steps of the proposed methodology are reported in Figure 3. Involved steps are deeply explained in the following sections.

2.4.1. NDVI and Multi-Temporal Stack Generation

The Normalized Difference Vegetation Index (NDVI) is widely known in literature to be a spectral index able to retrieve information about vegetation [15,16,17,18,19], with special concern about phenology [20,21,22], ecosystems characterization [23], crop yield prediction [24,25], urban green areas and heat islands monitoring [26,27], tree vigor decline assessment [28,29], insurance strategies in agriculture [30,31,32,33]. In this work, NDVI was assumed as phenology predictor and computed starting from the native S2 L2A imagery to compose a NDVI image time series covering the whole 2019 growing season. A similar image time series was generated with respect to the SCL layer and used to mask out bad observations during TS filtering and modelling. Filtering and modelling of NDVI temporal profiles were achieve at pixel level using a self-developed routine implemented in IDL v4.8 (Harris Geospatial Solutions, Inc., Broomfield, CO, USA) [34]. After bad observations removal, a spline-base interpolation (tensor value was set = 10) was performed in the time domain to regularize the local NDVI temporal profile. The resulting filtered and regularized NDVI time series assumed a nominal time frequency of 5 days [35,36]. Sixty-nine NDVI maps were finally obtained for the 2019 and stacked along a new time series (hereinafter called TS). TS was used to describe the temporal profile of each vegetated pixel in AOI and, consequently, its phenology (Figure 4).
The basic assumption of this work was that NDVI temporal profile can be interpreted to recognize crops and related occurring management practices [37], especially when agronomic calendars are known. Several works adopted TS analysis in agriculture; for example Schreier [38] combined Landsat, S2 and MODIS data to map crop specific phenology. Furthermore Gómez-Giráldez fused S2 and terrestrial photography to monitor grass phenology and hydrological dynamics [39]. According to ordinary agronomic uses, in this work, TS was generated with respect to the so called St. Martin’s year (agronomic year) that starts/ends on the 11th November. This yearly time range is needed, in AOI, to correctly describe phenology of both “winter” (as autumn-winter cereals) and “summer” crops (as corn and rice). Such an approach was already proved to be effective in crop classification analysis [40].

2.4.2. Selection of Controllable Fields

Depending on the size and the shape of monitored fields, deductions can greatly vary in terms of reliability. In particular, the characterization of plot size and shape with respect to S2 geometrical resolution is fundamental. Not reliable measures can in fact occur while working with fields showing small size and/or a high shape anisotropy [41,42], mostly due to the so called mixed pixels whose spectral response results from the joint contribution of different type of covers. To take care about this issue, the Shape Index (SI, Equation (1)) and the area of GSAA polygons were computed by ordinary GIS tools available SAGA GIS 7.5 [43].
S I = P 2 π A
where P and A are the polygon perimeter and area, respectively [44]. All GSAA polygons having area less than 0.1 ha (about 3 × 3 pixels) and SI ≥ 3 (very elongated shape) were masked out and labeled as “not controllable by satellite”.

2.5. ROI Selection and Assessment

Preventively, NDVI value of each TS layer was averaged with respect to candidate polygons belonging to GSAA database. A supervised classification approach [45,46,47] based on the assessment of field average NDVI profile was selected as the most suitable one. With reference to focus crops, 151 regions of interest (ROI) were selected from GSAA and verified by querying and interpreting correspondent TS profiles. ROI distribution within AOI is shown in Figure 5.
TS profile interpretation was achieved by comparing it to available agronomic calendars. Wheat and soybean required to be separated in two different ROIs according to management type related to crop rotation [48,49]. Table 6 reports ROIs features: ROI and crop identifier (ID), sample size (n. of polygons and area), and class description. Figure 6 shows mean NDVI profiles (and standard deviation) of ROIs. To preventively explore ROIs separability, the pairwise Jeffries-Matusita test (JM) was run [50]. JM computes a parameter varying between 0 and 2, where 2 means complete separability of compared classes, 0 means no separability.

2.6. Crop Type Classification

As previously mentioned, a plot-based classification approach was adopted in this work. Two algorithms were contemporarily used: Minimum Distance (MD) and Random Forest (RF) [51]. This choice relied on the consideration that crop type detection was expected to be ingested by ordinary workflows of CAP payment agencies. Consequently, the easier the approach, the easier the technological transfer. These algorithms areas are known to be fast and easy to be managed since they require the setting of few parameters and results are often reliable and satisfying. Conversely, they adopt different criteria to compare reference profiles (ROIs) with the local one. Consequently, an approach integrating two different answers to the same question retained a good choice for making results more robust. Many works in literature highlighted the performance and capability of these classifiers in the agricultural context [52,53]. Classifications were run using routines available in SAGA GIS 7.0.0.

2.6.1. Minimum Distance Classification

MD classifier is based on the computation of the Euclidean distance, in the iper-dimensional space defined by TS layers [54]. MD approach is certainly more effective when class dispersion is sufficiently low. MD admits the adoption of a distance threshold to accept or reject class assignation for the pixel/polygon. If this threshold is exceeded, pixel/polygon remains unclassified, i.e., it is not assigned to any of the classes. For this work, the distance threshold value was set to 1.3 points of NDVI.

2.6.2. Random Forest Classification

RF is a type of supervised machine learning algorithm based on multiple prediction models. Each model used by RF forecasting is usually a decision tree. This means that a RF combines many decision trees in a single model. Individually, the forecasts made by individual decision trees may not be accurate, but combined together, forecasts will be averagely closer to the true result. RF algorithm can be used for both regression and classification problems [55]. The use of RF in remote sensing in order to map different areas is widely discussed in the literature [56,57,58,59]. For this work, RF was run setting a number of trees equal to 10 and a number of training samples equal to 5000 pixels. RF design was decided with reference to some “unstructured” repeated trials. The best performing configuration, in terms of kappa coefficient value (K), was selected out of the RF run trials. Authors did not deepen further this issue since RF parameters selection is expected to be set up time by time when the classifier is run. Consequently, no general indication can be given at this point.

2.7. Classifications Accuracy Assessment

MD and RF classification were tested with respect to GCs in order to assess classification accuracy. In total, 664 GCs were used to generate the confusion matrices and compute performance parameters: overall accuracy (OA), user’s and producer’s class accuracy (UA and PA) and K were calculated [60].

2.8. Service Prototype Development

Classifications produced by MD and RF algorithms were integrated in a prototype system that could be used to verify truthfulness of GSAA. Initially, a spatial join was performed to transfer MD and RF class codes to GSAA attribute table. Based on this new dataset, hereinafter called controls map (CM), the following conditions were tested and a new code recorded in a further attribute table field (Table 7).
For each CM code, a specific administrative procedure is expected, involving (or not) GCs, depending on resulting priority. This prototypal methodology would allow paying agencies to proceed with PAC contributions payment and improving irregularities detection. Materials and Methods should be described with sufficient details to allow others to replicate and build on published results. Please note that publication of your manuscript implicates that you must make all materials, data, computer code, and protocols associated with the publication available to readers. Please disclose at the submission stage any restrictions on the availability of materials or information. New methods and protocols should be described in detail while well-established methods can be briefly described and appropriately cited.
Research manuscripts reporting large datasets that are deposited in a publicly available database should specify where the data have been deposited and provide the relevant accession numbers. If the accession numbers have not yet been obtained at the time of submission, please state that they will be provided during review. They must be provided prior to publication.
Interventionary studies involving animals or humans, and other studies requiring ethical approval must list the authority that provided approval and the corresponding ethical approval code.

3. Results and Discussions

3.1. Selection of Controllable Fields

GSAA data were filtered according to the above-mentioned geometric criteria involving SI and area parameters of fields. Only 22% (47,576 out of 208,675 starting) of the fields showed to satisfy geometric requirements to make them suitable to be controlled by S2 data. While in terms of surface area there is not a large decrease, from 115,647 ha to 85,854 ha (about 74% of the total). The huge reduction of controllable fields was mainly related to the peculiar fragmentation of the Italian agricultural landscape made of many small properties with highly anisotropic geometries. These fields were considered not reliable and have a poor impact on PAC contributions; therefore were masked out from all subsequently steps.

3.2. ROI Selection and Assessment

ROI separability assessment was performed according to JM and results are shown in Table 8. In general, low JM values, never exceeding 0.9, were found. This could be related to the frequency distribution of NDVI values along TS. It can be noted that many ROI profiles (Figure 6) contain observations with low NDVI values occurring when no active vegetation is present (winter or before the development/sowing of crops). This period, if included in the profile during the classification process, could make classes more similar, being possibly related to bare soil condition preceding vegetation growth.
In spite of this, JM test values can be used to explore class to class similarity. Table 8 shows that low values concern comparison between summer crops (in red), that necessarily present a similar phenology. For all of them, biomass is expected to be maximum in July–August and the growing season duration is similar as supported by their agronomic calendars (Figure 2). Wheat (winter crop) and soybeans (summer crop) show, expectably, low JM values: this was found to be majorly due to the succession of crops (a summer crop following a winter one) that, in many cases, is the ordinary field management strategy. This determines a multi-modal TS profiles that introduces noise when trying to use the NDVI profile of the whole season to separate crops. (Table 8 blue color). A higher separability was, instead, found between meadow and other classes.

3.3. ROI Selection and Assessment

Results of MD and RF classification are shown in Figure 7. Area size and number of classified fields are reported in Table 9 for all the classes. Although number and area size of plots were the same for both the classifications, MD classification was run setting a distance threshold that labeled as unclassified about 11,000 plots (about 19,500 ha). Rice resulted the main crop type in AOI for both MD and RF.

3.4. Classification Accuracy Assessment

Classifications accuracy was tested with respect to GCs and the correspondent confusion computed (Table 10, Table 11 and Table 12). In general, it can be noted that: OA and K were high for both MD and RF (>80% and >0.70, respectively); user’s class accuracy (UA) and producer’s class accuracy (PA) for corn, rice, and meadow were high (>70%); soybean and wheat showed the lowest UA and PA values for both classifications (Table 12). This was already suggested by the JM test that highlighted a very low separability between these two classes, possibly due to the bi-modal NDVI profile characterizing many winter wheat fields, where a second crop is often planted after the yield. Soybean and rice, similarly, showed a high commission that could be related to their similar phenology. For these crops year periods when vegetation is not active seems to majorly affect classification commission. Similar results were obtained by Konduri [61] while classifying a large area in USA using multi-temporal MODIS (Moderate Resolution Imaging Spectroradiometer) data: resulting UA and PA values ranged from 40% to 60% for corn, wheat, soybean, and rice. Similarly, Belgiu [62] found comparable UA and PA values for corn, wheat, rice, and meadow in different study areas (USA, Romania, and Italy) basing classification on RF and S2 data. Additionally, the highly fragmented and varying Italian agricultural context, aiming at maximizing specificity and quality of products, certainly increase phenological differences also within the same crop class; this makes more probable that specific groups of the same class appear majorly similar to specific groups of another crop class. Some improvement of classification results can certainly come from the adoption of machine learning/artificial intelligence algorithms supported by additional discriminants like field geometrical and textural features, topographic parameters, and other spectral indices [63,64]. Nevertheless, the choice of basing the proposed procedure on simple, controllable, and “user-friendly” classification algorithms, still remains strategic in the present technological transfer context. In fact, in too many cases, technicians from stakeholders do not still possess remote sensing skills and a simplified approach to make them closer to this new approach is mandatory.

3.5. Service Prototype Development

CM layer (Figure 8), equipped with codes ideally activating ARPEA procedures for controls about truthfulness of GSAA, certainly represents an improving tool of present situation. In particular, it makes possible to extend preliminary controls to the 22% in AOI and define a priority of field campaigns. CM statistics for AOI are shown in Figure 9 with reference to monitored crops.
Figure 9 shows that 38,164, corresponding to 80% out of the total controlled fields, (22% of GSAA after shape/size filtering) seemed to not require GCs (CM code 1–2); 3964 GSAA (8% of controlled fields) appeared to require GCs (CM code 4). For 5448 fields (12% of controlled fields—CM code 3), MD, RF, and GSAA were not concordant with each other: deductions about these fields have to be considered unreliable making desirable (not mandatory) GCs. In terms of surface, Figure 9 shows that over 70,000 ha seemed to not require GCs (CM code 1–2); over 6500 ha appeared to require GCs (CM code 4); and for about 8000 ha (CM code 3), was suggested GCs. Summarizing, one can say that: (a) the procedure was able to test 22% of GSAA fields; (b) a reliable check (codes 1, 2, 4) was obtained for 88% of selected fields corresponding to about 19% of GSAA fields; (c) no reliable information concerned the 12% of selected fields corresponding to the 2.6% of GSAA fields. These could be reasonably included in the 5% of GSAA fields that are ordinarily controlled by ground campaigns, making selection more focused than previously. With respect to expectations from ARPEA, this approach still has a limit related to the need of using TS covering the entire growing season. This determines that classification results can be made available only at the end of the agronomical year (mid of October), making GCs impossible to be operated when crops have not still been harvested.

3.6. Future Developments

Future developments of this work will be certainly addressed to improve present classifications results. The joint adoption of many spectral indices, the integration of Sentinel 2 and Sentinel 1 data and the collection of additional structured agronomic parameters (e.g., Leaf Area Index, Growing Degree Day) area certainly need to be considered.
Moreover, some tests will be addressed to investigate if crop detection can be accurately obtained also before the end of the growing season by progressively shortening the sequence of NDVI observations. In this case, a time threshold should be identified and tested against time deadlines of administrative procedures of CAP controls to, eventually, make possible an early warning to farmers to correct their declarations.

3.7. Discussions

Farmers that intend to access CAP contributions must apply to the territorially competent Paying Agency through GSAA, a GIS-based procedure that contains information about land use and size of parcels and location of the (eventual) ecological focus areas. Paying Agencies are called to verify GSAA compliance with requirements through AC and SC. SC, in particular, are generally performed with reference to five percent of applications to verify truthfulness of declared crop type and areas, compliance of eligibility criteria, and envisaging of commitments and obligations. SC are presently operated by photo-interpretation of high-resolution satellite images and/or, in specific and rare cases, by direct ground checks (GCs). An important step, too often neglected, is the a-priori selection of those GSAA fields that can be reasonably controlled by satellite (i.e., showing specific shape and size features). In AOI, only the 22% of fields proved to be compliant with shape/size requirements. While in terms of surface area, there is not a large decrease (about 74% of the total). As far as separability of crop classes, based on NDVI temporal profiles was concerned, it proved to be a key and limiting factor. Confusion matrices, built with respect to ground controls, showed an OA > 80% for both MD and RF. Commission and omission errors were not negligible, suggesting that some crops express similar phenological behaviors. Rice, soybean, and corn demonstrated to be poorly separable (JM < 0.10). Unexpectedly, wheat and soybean showed a low degree of separability and highlighted that some classification problems were due to winter crop-related practices where two successive crops are coupled along the year in the same field (bi-modal NDVI temporal profile). In spite of these improvable situations, meadow, rice, corn, and wheat classes proved to be reliably detectable (UA > 70%). From an operational point of view, the choice of coupling two classifiers (MD and RF) within the same procedure made possible to integrate correspondent results to generate the CM layer. The latter can be interpreted as a technical tool supporting the administrative process by ARPEA where, for each GSAA field suitable to be controlled by satellite, a code is assigned suggesting the administrative procedure to adopt during controls. In AOI, according to CM, the eight percent of PAC 2019 applications for fields suitable to be controlled by satellite (22% of the total), were recognized as requiring GCs, since detected class by remote sensing was different from the declared one; conversely, the 80% proved to be consistent with GSAA applications and, consequently, no GC was required. The remaining 12% referred to unreliable detection.

4. Conclusions

In this work, a prototype service was proposed aimed at supporting controls by institutional players (e.g., ARPEA) about farmers’ EU CAP applications. This work was solicited by the Piemonte Agency for Payments in Agriculture (ARPEA) to support SC with special concern about five crops: soybean, corn, wheat, rice, and meadow. The proposed procedure, currently, represents one of the first institutional satellite-based workflows in the EU context. The procedure relies on NDVI time series from Copernicus Sentinel 2 data, assuming temporal profiles of NDVI as descriptors of crop phenology capable of discriminating crops through a classification process. In this work, NDVI profile classification was operated by coupled supervised classifiers that ensured easy use by unskilled users: Minimum Distance and Random Forest, both operating in the time domain of NDVI temporal profiles (OA < 80% for both algorithms). AOI was selected within the agriculture-devoted province of Vercelli (Piemonte Region), where a heterogeneous richness of crops was present, included the above mentioned five ones. In spite of this preliminary, but institutionally supported, experience, the proposed prototypal service proved to be able to optimize GCs, ranking, and mapping the priority of controls, thus allowing economic savings (over 70,000 ha, about 83% of monitorable fields, do not seem to require GCs). It is worth noting that, until 2016, only the five percent of GSAA were controlled according to a random selection. Conversely, the proposed procedure makes now possible to control all “suitable“ GSAA and move field selection from a random to a focused and ranked sampling. Nevertheless, the reliability of deductions strictly depends on ROI quality and specificity where agronomic skills are basic. Consequently, the adoption of this tool within administrative workflows will have to take carefully into account that reliable data and should feed the system concerning training set to adopt during classification and that, the training set has to be updated annually.

Author Contributions

Conceptualization, F.S., E.X., and E.B.-M.; methodology, F.S. and E.B.-M.; software, F.S. and E.B.-M.; validation, F.S., E.X., and S.D.P.; formal analysis, F.S. and E.X.; investigation, F.S. and E.X.; resources, F.S., E.X., and G.C.; data curation, F.S. and E.X.; writing—original draft preparation, F.S., E.X., and S.D.P.; writing—review and editing, F.S., S.D.P., and E.B.-M.; visualization, F.S.; supervision, E.B.-M. and G.C.; project administration, E.B.-M. All authors have read and agreed to the published version of the manuscript.

Funding

This research received no external funding.

Institutional Review Board Statement

Not applicable.

Informed Consent Statement

Informed consent was obtained from all subjects involved in the study.

Data Availability Statement

Data sharing not applicable.

Acknowledgments

We would like to thank Chiara Leuzzi, Ruben De March, Angelo Fabio Mulone and Rosario Messineo, technicians by the Aerospace Logistics Technology Engineering Company (Altec), who worked together with DISAFA and ARPEA on this project pursuing classification with machine learning algorithms.

Conflicts of Interest

The authors declare no conflict of interest.

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Figure 1. Study area (yellow) is located within the province of Vercelli in the Piemonte Region, NW Italy. (Reference system is WGS 84/UTM zone 32N, EPSG: 32632).
Figure 1. Study area (yellow) is located within the province of Vercelli in the Piemonte Region, NW Italy. (Reference system is WGS 84/UTM zone 32N, EPSG: 32632).
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Figure 2. Example of the cultivation phases for the analyzed crops in the province of Vercelli.
Figure 2. Example of the cultivation phases for the analyzed crops in the province of Vercelli.
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Figure 3. Main conceptual steps of the proposed methodology.
Figure 3. Main conceptual steps of the proposed methodology.
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Figure 4. Examples of Normalized Difference Vegetation Index (NDVI) temporal profiles. They describe, at pixel level, NDVI evolution over time. (a) Soybean; (b) Soybean in succession with other crops; (c) Corn; (d) Wheat; (e) Wheat in succession with other crops; (f) Rice; (g) Meadow.
Figure 4. Examples of Normalized Difference Vegetation Index (NDVI) temporal profiles. They describe, at pixel level, NDVI evolution over time. (a) Soybean; (b) Soybean in succession with other crops; (c) Corn; (d) Wheat; (e) Wheat in succession with other crops; (f) Rice; (g) Meadow.
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Figure 5. Regions of interest (ROI) distribution, code meaning is reported in Table 6 (Reference system is WGS 84/UTM zone 32N, EPSG: 32632).
Figure 5. Regions of interest (ROI) distribution, code meaning is reported in Table 6 (Reference system is WGS 84/UTM zone 32N, EPSG: 32632).
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Figure 6. ROIs’ average NDVI profiles throughout the 2019 season. Bold line represents mean profile; dotted lines are mean ± standard deviation profiles. (a) Soybean-100; (b) Soybean-101; (c) Corn-200; (d) Wheat-300; (e) Wheat-301; (f) Rice-400; (g) Meadow-500.
Figure 6. ROIs’ average NDVI profiles throughout the 2019 season. Bold line represents mean profile; dotted lines are mean ± standard deviation profiles. (a) Soybean-100; (b) Soybean-101; (c) Corn-200; (d) Wheat-300; (e) Wheat-301; (f) Rice-400; (g) Meadow-500.
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Figure 7. (a) MD Classification, (b) RF Classification. Code meaning is reported in Table 9 (Reference system is WGS 84/UTM zone 32N, EPSG: 32632).
Figure 7. (a) MD Classification, (b) RF Classification. Code meaning is reported in Table 9 (Reference system is WGS 84/UTM zone 32N, EPSG: 32632).
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Figure 8. Controls map (CM). Code meaning is reported in Table 9. (Reference system is WGS 84/UTM zone 32N, EPSG: 32632).
Figure 8. Controls map (CM). Code meaning is reported in Table 9. (Reference system is WGS 84/UTM zone 32N, EPSG: 32632).
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Figure 9. (a) CM code for each crops analyzed (%); (b) CM code for each crops analyzed in terms of surface (ha). Code meaning is reported in Table 9.
Figure 9. (a) CM code for each crops analyzed (%); (b) CM code for each crops analyzed in terms of surface (ha). Code meaning is reported in Table 9.
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Table 1. Common Agricultural Policy (CAP) funding to Italy from 2014 to 2020 (billion euros) (Source: Ministry of Agricultural, Food and Forestry Policies).
Table 1. Common Agricultural Policy (CAP) funding to Italy from 2014 to 2020 (billion euros) (Source: Ministry of Agricultural, Food and Forestry Policies).
FundEuropean Union FundsNational FundsTotalAnnual Average
Direct Payments270273.8
Common Organization of Markets (CMO) wine, fruit, and vegetables4040.6
Rural development 10.510.5213
Total41.510.5527.4
Table 2. Sentinel-2 Multi Spectral Instrument Technical characteristics.
Table 2. Sentinel-2 Multi Spectral Instrument Technical characteristics.
Bands (nm)Geometric Resolution (m)
B1: 433–45360
B2: 458–52310
B3: 543–57810
B4: 650–68010
B5: 698–71320
B6: 733–74820
B7: 773–79320
B8: 785–90010
B8a: 855–87520
B9: 935–95560
B10: 1360–139060
B11: 1565–165520
B12: 2100–228020
Radiometric resolution: 12 bit
Temporal resolution: 5 (10) days
Table 3. Coding of pixel assignment classes adopted in the “scene_classification” layer provided with Level 2A products.
Table 3. Coding of pixel assignment classes adopted in the “scene_classification” layer provided with Level 2A products.
CodeDescription
0No data
1Saturated or Defective
2Dark area pixels
3Cloud shadows
4Vegetation
5Not vegetated
6Water
7Unclassified
8Cloud Medium Probability
9Cloud High Probability
10Thin Cirrus
11Snow
Table 4. Example data contained in Geo Spatial Aid Application (GSAA).
Table 4. Example data contained in Geo Spatial Aid Application (GSAA).
ID GSAAMunicipalityField Area (ha)Declared CultivationProductsID of Farm Company
10115784Vercelli0.5RiceBeans, seeds, grains1467
13248425Vercelli0.72MeadowForage1462
27757591Vercelli2.49RiceBeans, seeds, grains1191
25860265Vercelli1.39CornBeans, seeds, grains1712
24675625Vercelli0.18SoybeanBeans, seeds, grains1560
22426581Vercelli4.43BarleyBeans, seeds, grains763
Table 5. Size and number of surveyed plots per crop type.
Table 5. Size and number of surveyed plots per crop type.
CropsNumber of Fields SurveyedTotal Area of Fields Surveyed (ha)
Soy89120.74
Corn18777.11
Wheat105847.78
Rice159108.25
Meadows101257.32
Table 6. Characteristics of ROI.
Table 6. Characteristics of ROI.
Crop ClassID ROIID Crop#PlotsArea (ha)Description
Soybean10011626.57Soya as the only crop for the entire agronomic year
101126.11Soya in succession to a second crop
Corn20023269.09Corn as the only crop for the entire agronomic year
Wheat30031411.54Wheat as the only crop for the whole agronomic year
3012132.22Wheat grown on a second crop
Rice400440289.37Rice as the only crop for the whole agronomic year
Meadow50051615.38Meadow not alternated, as the only crop for the entire agronomic year, with some mowings
Total--151450.29-
Table 7. Tested conditions and actions that the control system operates with respect to Minimum Distance (MD) and Random Forest (RF) classification results.
Table 7. Tested conditions and actions that the control system operates with respect to Minimum Distance (MD) and Random Forest (RF) classification results.
Assigned CM CodeTested ConditionAction
1Class assignation from MD and RF are both concordant to GSAANo ground survey is needed
2GSAA is equal to at least one classificationNo ground survey is needed
3Class assignation from MD and RF are different and both discordant with GSAAA ground survey is suggested
4Class assignation from MD and RF are equal but discordant with GSAAA ground survey is needed
Table 8. Test separability of ROI with JM, low values are underlined (JM low values between summer crops in red and JM low values between multi-modal TS profiles in blue).
Table 8. Test separability of ROI with JM, low values are underlined (JM low values between summer crops in red and JM low values between multi-modal TS profiles in blue).
ROI ID 2019100101200300301400500
100 0.330.100.290.520.100.85
101 0.300.090.240.360.61
200 0.290.510.060.82
300 0.250.340.64
301 0.560.43
400 0.86
500
Table 9. Test separability of ROI with Jeffries-Matusita test (JM).
Table 9. Test separability of ROI with Jeffries-Matusita test (JM).
Crop ClassesMD ClassificationRF Classification
Number of PlotsClass Area (ha)Number of PlotsClass Area (ha)
141807840.5512,93423,181.91
2768311,337.2111,00417,418.45
3655786.3916872086.42
421,44644,441.3319,06340,444.23
522511768.3228882552.56
Table 10. Confusion matrix of AOI performed by MD classification.
Table 10. Confusion matrix of AOI performed by MD classification.
MD Classification
Crop CodesReferenceTotal
12345
Classification1596159183757666013,215
2254220,66521011552725,850
311486950174928
416254041104075,516159683,818
5213285246830904312,039
Total10,35225,630714181,32711,400135,850
Table 11. Confusion matrix of AOI performed by RF classification.
Table 11. Confusion matrix of AOI performed by RF classification.
RF Classification
Crop CodesReferenceTotal
12345
Classification16362108140666586014,594
2139422,7636944922146331,236
35083487855965612
4243616364771,1911675,326
51991672832492929965
Total10,44124,757730882,80011,427136,733
Table 12. Test separability of ROI with JM.
Table 12. Test separability of ROI with JM.
Crop CodesMD ClassificationRF Classification
UAPAUAPA
145.1157.5843.5960.93
279.9480.6372.8791.95
374.899.7386.9266.75
490.1092.8594.5185.98
575.1179.3293.2581.32
OA82.3683.73
K0.700.73
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Sarvia, F.; Xausa, E.; De Petris, S.; Cantamessa, G.; Borgogno-Mondino, E. A Possible Role of Copernicus Sentinel-2 Data to Support Common Agricultural Policy Controls in Agriculture. Agronomy 2021, 11, 110. https://doi.org/10.3390/agronomy11010110

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Sarvia F, Xausa E, De Petris S, Cantamessa G, Borgogno-Mondino E. A Possible Role of Copernicus Sentinel-2 Data to Support Common Agricultural Policy Controls in Agriculture. Agronomy. 2021; 11(1):110. https://doi.org/10.3390/agronomy11010110

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Sarvia, Filippo, Elena Xausa, Samuele De Petris, Gianluca Cantamessa, and Enrico Borgogno-Mondino. 2021. "A Possible Role of Copernicus Sentinel-2 Data to Support Common Agricultural Policy Controls in Agriculture" Agronomy 11, no. 1: 110. https://doi.org/10.3390/agronomy11010110

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