Validation of Predicted Virulence Factors in Listeria monocytogenes Identified Using Comparative Genomics

Abstract

Listeria monocytogenes is an intracellular facultative pathogen that causes listeriosis, a foodborne zoonotic infection. There are differences in the pathogenic potential of L. monocytogenes subtypes and strains. Comparison of the genome sequences among L. monocytogenes pathogenic strains EGD-e and F2365 with nonpathogenic L. innocua CLIP1182 and L. monocytogenes strain HCC23 revealed a set of proteins that were present in pathogenic strains and had no orthologs among the nonpathogenic strains. Among the candidate virulence factors are five proteins: putrescine carbamoyltransferase; InlH/InlC2 family class 1 internalin; phosphotransferase system (PTS) fructose transporter subunit EIIC; putative transketolase; and transcription antiterminator BglG family. To determine if these proteins have a role in adherence and invasion of intestinal epithelial Caco-2 cells and/or contribute to virulence, five mutant strains were constructed. F2365ΔinlC2, F2365Δeiic, and F2365Δtkt exhibited a significant (p < 0.05) reduction in adhesion to Caco-2 cells compared to parent F2365 strain. The invasion of F2365ΔaguB, F2365ΔinlC2, and F2365ΔbglG decreased significantly (p < 0.05) compared with the parent strain. Bacterial loads in mouse liver and spleen infected by F2365 was significantly (p < 0.05) higher than it was for F2365ΔaguB, F2365ΔinlC2, F2365Δeiic, F2365Δtkt, and F2365ΔbglG strains. This study demonstrates that aguB, inlC2, eiic, tkt, and bglG play a role in L. monocytogenes pathogenicity.

1. Introduction

Listeria monocytogenes is a Gram-negative intracellular foodborne pathogen that can cause invasive infection with high mortality rates. Compared to many other foodborne pathogens, L. monocytogenes causes a relatively low number of human disease cases, but it is estimated to cause nearly one-fourth of all foodborne-disease-related deaths in the United States each year [1,2]. Pregnant women, newborns, the elderly, and immunocompromised individuals are predominantly affected by an invasive form of illness. Gastrointestinal illness can develop in healthy adults and children as a possible manifestation following ingestion of Listeria.

During the infection process, Listeria can cross the intestinal, placental, and blood-brain barriers and cause meningoencephalitis, mastitis, abortion, metritis, and septicemia [3,4]. L. monocytogenes can grow in a wide range of conditions such as refrigeration (2–4 °C), low pH, and high sodium concentrations [5]. As a result, L. monocytogenes has been reported in a wide range of both raw and processed foods, including dairy products, meat products, poultry products, vegetables, and fish products.

The genus Listeria currently includes seventeen species [6]. Only the three hemolytic species (L. monocytogenes, L. seeligeri, and L. ivanovii) are considered pathogens [7]. Of these, L. monocytogenes is consistently pathogenic and is involved in food-borne outbreaks of listeriosis [8]. Few rare cases of human infections by L. ivanovii and L. seeligeri were reported [9,10,11]. To search for novel virulence factors of Listeria, our group previously performed orthology analysis to identify proteins present in pathogenic strains (EGD-e and F2365) but absent in nonpathogenic strains of the same or closely related species (L. monocytogenes strain HCC23 and L. innocua strain CLIP1182) [12]. The result revealed a list of 58 secreted proteins, enzymes, transporters, and transcriptional regulators that are uniquely encoded by EGD-e and F2365 compared to HCC23 and CLIP1182. The 58 proteins were classified into different categories according to their functional roles: carbon metabolism, biosynthesis of amino acids, microbial metabolism in diverse environments, cell adhesion, regulation of transcription, biosynthesis of secondary metabolites, capsule synthesis, protein metabolism, signal transduction, and transport. Some of the 58 proteins were previously published and identified to contribute to Listeria virulence [12,13,14].

Among the candidate virulence factors, five proteins were selected that were not previously characterized in F2365: putrescine carbamoyltransferase (WP_003724872); InlH/InlC2 family class 1 internalin (WP_003728063); PTS fructose transporter subunit EIIC (WP_003722829); putative transketolase (WP_003725545); and transcription antiterminator BglG family (AAT05528). These five proteins were selected out of 58 proteins to represent different functional groups and classes. Putrescine carbamoyltransferase is one of the four enzymes that constitute agmatine deiminase (AgDI) pathway, which is implicated in bacterial tolerance to acidic environments [15,16]. InlC2 belongs to the internalin protein family, which mediates adhesion and invasion [17,18]. EIIC is one of the phosphotransferase system (PTS) components that contributes to selective transport of sugars across the inner bacterial membrane [19]. Transketolase (TKT) is an enzyme in the non-oxidative branch of pentose phosphate (PP) pathway that connects the PP pathway to glycolysis [20]. BglG represents a group of transcriptional antiterminators that control expression of sugar utilization genes [21,22].

Comparative genomics is an emerging field, and it has the capability of predicting putative genes associated with particular phenotypes, including virulence. Comparative genomic analyses of L. monocytogenes strain EGD-e with nonpathogenic L. innocua strain CLIP1182 revealed potential genetic differences responsible for pathogenicity [23]. Since then, several virulence factors were identified in L. monocytogenes by comparative genomics [12,24]. In the current study, we assessed the contribution to virulence of five L. monocytogenes genes identified solely by comparative genomics. To assess virulence, we compared the ability of aguB, incl2, eiic, tkt, and bglG mutants to invade and adhere to intestinal cells, which is an important step to initiate infection and essential for systemic listeriosis. Also, we elucidated the role of the five genes in L. monocytogenes virulence using a mice virulence assay. Our findings validate the use of comparative genomics, particularly orthology analysis, as a predictive method to identify putative virulence genes.

2. Results

2.1. Growth of Mutants

The mutant strains exhibited a similar growth rate to the wild type F2365 strain when grown in brain heart infusion (BHI) as enriched medium or minimal medium (MM) (Figure 1).

2.2. Role of aguB, inlC2, eiic, tkt, and bglG in L. Monocytogenes Adhesion

The abilities of wild type F2365 strain and mutant strains to adhere to Caco-2 cells were compared. Caco-2 cells were incubated for 1 h at 37 °C with 10⁶ colony-forming unit (CFU) of bacteria. Strain F2365ΔinlC2, F2365Δeiic, and F2365Δtkt showed an approximately 1-log(log₁₀), 0.8-log, and 0.9-log reduction in adhesion to Caco-2 cells compared with parent strain F2365. These differences were statistically (p < 0.05) significant. F2365ΔaguB and F2365ΔbglG showed approximately 0.46-log and 0.5-log reduction in adhesion to Caco-2 cells compared to parent strain F2365, and this was not statistically significant. Complementation of the mutations restored adhesion properties (Figure 2).

2.3. Role of aguB, inlC2, eiic, tkt, and bglG in L. Monocytogenes Invasion

Invasion of the F2365 strain and mutant strains of L. monocytogenes were compared in Caco-2 cells. Caco-2 cells and bacteria were incubated for 1 h at 37 °C followed by an additional 2.5 h in media with gentamicin to kill extracellular bacteria. There were approximately 0.57-log, 0.9-log, and 0.8-log reductions in the invasion in Caco-2 cells infected with F2365ΔaguB, F2365ΔinlC2, and F2365ΔbglG, compared to parent strain F2365, respectively. These differences were statistically significant (p < 0.05). F2365Δeiic and F2365Δtkt showed an approximate 0.2-log and 0.4-log reduction in invasion compared to parent strain F2365, and this was not statistically significant (Figure 3). Complementation restored the invasion of the mutant strains to wild type levels.

2.4. Virulence and Colonization of Mutant Strains in Mice

Virulence of the five mutant strains was assessed in vivo using BALB/c mice. Mice were infected intraperitoneally with 5 × 10⁴ CFU/mL, and bacterial loads in liver and spleen were enumerated 3 days post-infection. Bacteria concentrations in the liver were significantly (p < 0.05) higher in mice infected with F2365 strain than mice infected with mutant strains. Bacteria concentrations were reduced about 1-log, 2.3-log, 1.5-log, 2.6-log, and 2.4-log in F2365ΔaguB, F2365ΔinlC2, F2365Δeiic, F2365Δtkt, and F2365ΔbglG compared with the wild-type strain, respectively (Figure 4A). Also, bacterial loads were found to be significantly higher in case of aguB, eiic, tkt, and bglG complemented strain as compared to corresponding mutant (p = 0.031, 0.0079, 0.0079, and 0.031, respectively), confirming that it was the deletion of the gene which led to the consequent alterations in the bacterial loads. No significant differences between the wild-type and complement strains were observed in these four strains (p > 0.05). However, bacterial loads in mice infected with inlC2 complemented strain were not significantly (p = 0.39) different compared to deletion strain. This could be due to a defect in the expression of the inlC2 during replication of the complemented strain in liver tissue. Moreover, genetic complementation could differ from the native level of expression [25]. Colonization of strain F2365 and complemented strains in the spleen was significantly (p < 0.05) higher than the tested mutants. Compared to parent strain F2365, the reduction in bacterial concentrations in spleen were 0.6-log, 1.5-log, 0.7-log, 1-log, and 1-log in F2365ΔaguB, F2365ΔinlC2, F2365Δeiic, F2365Δtkt, and F2365ΔbglG, respectively (Figure 4B).

3. Discussion

L. monocytogenes is a facultative intracellular bacterium able to penetrate and replicate within mammalian cells [26]. Serotype 4b strain F2365 was isolated from one of the worst bacterial foodborne outbreaks reported in the United States; it was involved in an outbreak of listeriosis in California in 1985 [27]. L. monocytogenes pathogenesis includes multiple stages such as internalization, vacuolar escape, intracellular replication, movement by actin mobilization, and cell-to-cell spread [28]. Several L. monocytogenes genes whose products are required for these processes have been identified [29]. The aim of the present study was to determine the predictive value of comparative genomics by investigating roles of five previously uncharacterized proteins in L. monocytogenes virulence. L. monocytogenes ability to adhere and invade phagocytic and non-phagocytic cells is an important aspect of disease pathogenesis. Thus, the intestinal epithelium Caco-2 cell line was used as an in vitro model to evaluate the effects of gene deletion on adhesion and invasion of L. monocytogenes. Intraperitoneal inoculation was chosen for this study as it allows Listeria to directly disseminate to the systemic sites via the lymphatic system and blood, bypassing the need for adhesion and invasion of the intestine as in oral infection [30]. To evaluate the level of systematic infection, bacteria loads in the liver and spleen were assayed 72 hours after infection. Liver and spleen play an important role in pathogenesis of listeriosis [31]. Shortly after infection, Listeria rapidly disseminates to the spleen and liver due to quick uptake by dendritic and Kupffer cells [32]. The majority of the invading bacteria accumulate in the liver and spleen and bacterial replication occurs in the liver and spleen during early stages of infection [33]. Peak burden of L. monocytogenes multiplication occurs at 48 to 72 h after infection and mice start to die shortly after this period [34].

In the present study, F2365ΔaguB showed approximately 0.57-log reduction in invasion in Caco-2 cells compared to parent F2365 strain. Also, deletion of aguB resulted in reduced colonization in liver and spleen as compared to wild-type. The aguB gene encoding putrescine carbamoyltransferase mediates phosphorolysis of N-carbamoylputrescine to produce putrescine and carbamoylphosphate [15]. This reaction represents the second step of the agmatine deiminase (AgDI) pathway, which includes four genes: An agmatine–putrescine antiporter (aguD); agmatine deiminase (aguA); putrescine carbamoyltransferase (aguB); and a carbamate kinase (aguC) [35]. The AgDI pathway plays an important role in the control of cytoplasmic pH and generates metabolic energy in the form of ATP [36,37] by converting agmatine into putrescine, ATP, ammonia, and carbon dioxide [38]. In a previous study, L. monocytogenes EGD-e mutants with deletion in ΔarcA and ΔargR (arginine deiminase ADI pathway genes, which closely resembles AgDI pathway) showed a 10-fold reduction in survival in spleens compared with the wild-type strain in mice following intraperitoneal infection [39]. In Salmonella Typhimurium, putrescine plays a critical role in controlling virulence through stimulating the expression of essential virulence loci. Furthermore, a S. Typhimurium putrescine mutant displayed defective invasion and survival/replication in epithelial cells and was attenuated in the mouse model compared to the wild-type [40].

In the present study, a ΔinlC2 mutant was defective in adhesion and invasion to epithelial cells and also showed significant attenuation in the mouse model. These results suggest that inlC2 contributes to L. monocytogenes virulence. Complementation of inlC2 mutant strain restored the adhesion and invasion to epithelial cells. However, full restoration of wild type behavior was not achieved by inlC2 complemented strain in liver tissue. This could be due to defect in the expression of the inlC2 during replication of complement strain in liver. InlC2 is in the internalin family, a diverse group of proteins required for entry of L. monocytogenes into non-professional phagocytic cells, such as epithelial cells, hepatocytes, fibroblasts, or endothelial cells [41]. The internalin family is characterized by tandem arrays of leucine rich repeats (LRR) [18]. inlC2 encodes a secreted protein of 548 aa and is in the same operon with inlD and inlE. The secreted InlC2 protein plays a significant role in L. monocytogenes cell to cell spread [42]. Its amino acid sequence is highly homologous to InlH, with only 13 amino acid differences. Both InlC2 and InlH have the same LRR domain and C-terminal regions, and both are regulated by the same stress-responsive sigma factor σ [43,44]. In some L. monocytogenes strains such as EGD and 10403S, the 5’end of inlC2 is fused with the 3′ end of inlD to result in inlH [45,46]. InlC2 upregulates antigens during infection and thus may be important in L. monocytogenes pathogenesis [47]. Inactivation of inlH (which removed inlD and inlC2) by an in-frame deletion led to attenuated L. monocytogenes EGD virulence, evidenced by significantly reduced numbers of bacteria in both liver and spleen compared to the wild-type strain after oral infection of mice [14]. In contrast, no effect on L. monocytogenes EGD virulence could be established upon inactivation of inlC2 by comparing bacterial concentrations in liver and spleen following intravenous injection [45]. In another study, deletion of inlC2 in L. monocytogenes strain M5 significantly enhanced the adherence and invasion to Hela cells, and virulence in murine mouse model. The authors speculate that increased invasion of ΔinlC2 mutant might be due to elevated production of InlA [48]. This discrepancy between the results may be due to strain differences that lead to difference in protein structure and function or may be due to differences in the cell line type [49,50]. Antibodies to InlC2 are generated in various animal hosts infected with L. monocytogenes, indicating that InlC2 may be induced in vivo [51].

Phosphotransferase component EIIC is an essential component of a phosphotransferase system (PTS) that is responsible for recognition, selective binding, and transport of specific sugar molecules through the cell membrane into the cytoplasm [52]. EIIC components are divided into several families, including subclasses for glucose, sucrose, mannitol, fructose, lactose, mannose, and cellobiose [53]. Understanding the role of EIIC (LMOf2365_0661) is of great importance because growth of L. monocytogenes as an intracellular pathogen depends on efficient use of sugar from the host. In the present study, F2365Δeiic exhibited a significant reduction in adhesion to epithelial cells. Moreover, F2365Δeiic had less bacterial counts in vivo compared to its parent strain. In a previous study, mutation of a PTS EIIC homolog did not impair virulence of Klebsiella pneumoniae in the mouse respiratory infection model [54]. Various PTS systems have been associated with Streptococcus gordonii adhesion and biofilm formation [55]. Also, an in vivo expression technology screen performed with K. pneumoniae strain CG43 indicated that ptfA, encoding a fructose phosphotransferase, was positively expressed during BALB/c mice infection [56].

Our study showed that deletion of tkt, encoding transketolase enzyme, in F2365 significantly decreased adhesion but did not affect invasion of Caco-2 cells compared to the parent strain. The tkt mutation also reduced virulence of L. monocytogenes in mice. Transketolase (tkt) catalyze the reversible transfer of a ketol group between several donor and acceptor substrates [57,58], thus creating a reversible link between glycolysis and the PP pathway. TKT is responsible for the production of essential cell constituents, such as aromatic amino acids, aromatic vitamins, NADPH, several sugar phosphate intermediates, and pyridoxine [59]. In Leishmania mexicana, tkt was found to be essential in establishing mammalian cell infection, and tkt-deleted L. mexicana did not cause any obvious lesions in mice even after 9 weeks [60]. Moreover, tkt1 is induced in vivo in chicken livers and spleens following avian pathogenic Escherichia coli (APEC) infection, demonstrating the importance of tkt in APEC pathogenesis [61]. Genes tktA and tktB are essential for APEC survival in chickens [62,63]. Moreover, tkt-deleted Mycobacterium tuberculosis displayed reduced virulence and intracellular growth in macrophages compared to wild-type strain [64]. In E. coli, deletion of tktA increased antibiotic and oxidative stress susceptibilities through interaction with marRAB operon [65].

In the present study, strains Δeiic and Δtkt adhered to Caco-2 cells less efficiently than wild type strain but the difference in the intracellular multiplication was not significant. This may be due to the fact that the role of these two genes is limited to entry process and contact between L. monocytogenes and host cells. Similar to this finding, the deletion of L. monocytogenes either fliF or fliI abolishes flagella assembly and impairs the bacterial adhesion to nonphagocytic cells. However, intracellular multiplication of null mutants is apparently not affected [66]. In the same study, the authors monitored the adhesion and intracellular multiplication of less motile L. monocytogenes strains. The result demonstrated that all the strains adhered less efficiently (between 2 and 10 times less) than EGD-e to Caco-2 cells but the intracellular survival was not affected in any of the isolates, suggesting that expression of these genes might play a role in the adhesion to epithelial cells but has no impact on intracytosolic multiplication [66].

The present work demonstrated that mutation of bglG impaired bacterial invasion severely but not adhesion. Furthermore, bglG deletion reduced the virulence of L. monocytogenes in mice. BglG is an RNA-binding transcriptional antiterminator that regulates expression of phosphoenolpyruvate phosphate transferase systems (PEP-PTS) by preventing premature termination of the transcription process [67]. In E. coli, bglG control expression of β-glucoside utilization (bgl) operon by binding to bgl mRNA at sites that stabilizing and alleviating the formation of the terminator structure and allowing transcription of downstream genes [68,69]. It is more likely that bglG is involved in sensing and consumption of carbohydrates from the host cell during infection, thus facilitating pathogenesis [70]. A previous study identified 15 putative bglG transcriptional antiterminators in the L. monocytogenes chromosome, all of which appear to be located either up or downstream from genes encoding PTS system [71]. Deletion mutants in lmo0402 and lmo0501 genes, which encode a bglG transcriptional antiterminator, exhibited they are essential for attachment of L. monocytogenes EGD-e strain at lower temperatures [72].

The in vivo study was performed to determine bacterial count in liver and spleen following dissemination of bacteria in the internal organs. However, the health-related parameters such as body temperature and weight loss were not recorded during the animal study. Even though body temperature and weight loss are often considered as benchmarks of wellbeing in animal models of acute and chronic disease, measurement of these parameters require handling of animals, which could cause distress and immune suppression that can confound the data and thereby potentially lead to erroneous conclusions [73]. Moreover, body temperature is influenced by numerous factors, including the time of day, the presence and type of bedding, and the number of cage mates [74,75]. Weight loss is a complex factor and does not always indicate the severity of illness or the likelihood of imminent death [76,77].

This study highlights the significant contributions of five genes in the pathogenic potential of L. monocytogenes by whether influencing the adhesion (inlC2, eiic, and tkt), invasion (aguB, inlC2, and bglG), and virulence (aguB, inlC2, eiic, tkt, and bglG) in mice. These results correlated with our comparative genomics and orthology analysis and support the role of such comprehensive and predictive methods in identifying putative and undiscovered virulence factors. However, the mechanisms leading to attenuated virulence in these mutants are not yet completely clear. Future work will focus on further identifying mechanism of attenuation on these strains.

4. Material and Methods

4.1. Ethics Statement

All animal experiment presented in this study was approved by the Animal Care Committee of the Mississippi State University (protocol # 17-105). Approval date: 11 March 2017.

4.2. Bacterial Strains and Growth Conditions

All of the strains and plasmids used in this study are listed in

Table 1. Bacterial strains and plasmids used in this study.

Bacterial Strains, Plasmid	Description	Source/Reference
E. coli
DH5α and Top10	Competent cells	Invitrogen (Carlsbad, CA, USA)
L. monocytogenes
F2365	wild-type serotype 4b strain	[79]
F2365ΔaguB	F2365ΔaguB mutant strain	This study
F2365ΔinlC2	F2365ΔinlC2 mutant strain	This study
F2365Δeiic	F2365Δeiic mutant strain	This study
F2365Δtkt	F2365Δtkt mutant strain	This study
F2365ΔbglG	F2365ΔbglG mutant strain	This study
F2365ΔaguB::aguB	F2365ΔaguB::pPL2-aguB complemented strain	This study
F2365ΔinlC2::inlC2	F2365ΔinlC2::pPL2-inlC2 complemented strain	This study
F2365Δeiic::eiic	F2365Δeiic::pPL2-eiic complemented strain	This study
F2365Δtkt::tkt	F2365Δtkt::pPL2-tkt complemented strain	This study
F2365ΔbglG::bglG	F2365ΔbglG::pPL2-bglG complemented strain	This study
Plasmids
pHoss1	8995 bp, pMAD::secY antisense, ΔbgaB	[78]
pPL2	6123 bp, PSA attPP, chlr	[80]
pLmΔaguB	pHoss1::ΔaguB	This study
pLmΔinlC2	pHoss1::ΔinlC2	This study
pLmΔeiic	pHoss1::Δeiic	This study
pLmΔtkt	pHoss1::Δtkt	This study
pLmΔbglG	pHoss1::ΔbglG	This study
pPl2-aguB	pPL2::aguB	This study
pPL2-inlC2	pPL2::inlC2	This study
pPL2-eiic	pPL2::eiic	This study
pPL2-tkt	pPL2::tkt	This study
pPL2-bglG	pPL2::bglG	This study

. Brain heart infusion (BHI) (Difco Laboratories, Detroit, MI, USA) and Luria–Bertani (LB) (Difco Laboratories) broth and agar were used to grow L. monocytogenes and Escherichia coli strains, respectively. L. monocytogenes and E. coli were incubated at 37 °C. Strains carrying plasmids were grown in the presence of the following antibiotics: ampicillin (100 μg/mL) for E. coli strains, erythromycin (10 μg/mL) and chloramphenicol (10 μg/mL) for L. monocytogenes strains. Anhydrotetracycline (ATc, 1.5 μg/mL) was used for inducing the expression of antisense secY RNA in the pHoss1 plasmid as described below [78]. Human enterocyte-like Caco-2 (TIB37, ATCC) cell lines were grown in Dulbecco’s Modified Eagle’s Medium (DMEM) (ATCC, Gibco, Manassas, VA, USA) supplemented with 20% fetal bovine serum (Atlanta Biologicals, Norcross, GA, USA) and 1% glutamine incubated at 37 °C with 5% CO₂ under humidified conditions.

4.3. Construction of L. Monocytogenes Mutants

Five genes (

Table 2. Summarizes information on the mutant strains and deleted proteins function.

Mutants	Locus Tag	Encoded Protein	Function
F2365ΔaguB	LMOf2365_0045	Putrescine carbamoyltransferase	Catalyzes the formation of putrescine from carbamoyl-putrescine during agmatine degradation
F2365ΔinlC2	LMOf2365_0281	Internalin C2	Virulence, modulate host inflammation
F2365Δeiic	LMOf2365_0661	Fructose-like permease EIIC subunit 2	Putative fructose-like permease EIIC subunit 2 phosphotransferase system (PTS) enzyme
F2365Δtkt	LMOf2365_1054	Transketolase_C	Transketolase, C-terminal subunit, putative transketolase, N-terminal subunit
F2365ΔbglG	LMOf2365_2763	Transcription antiterminator, BglG family	Beta-glucoside operon family transcription antiterminator

) were targeted for in-frame deletion using a previously published mutagenesis gene excision method [78]. A generic map and more details for the strategy used for genes deletion are present in our previously published manuscript [78]. The sequence of primers used for construction and validation of the mutants are listed in

Table 3. Primers used to generate and verify in-frame deletion strains.

Primers	Description	Sequence (5’→3’) b	RE a
AguB_F01	A	AAGTCGACTCCGTTCCAGTAGTCGCTCTA	SalI
AguB_R938	B	CGGAATCACCCTGTAACTCGT
AguB_F833	C	ACGAGTTACAGGGTGATTCCGCGTTTTAGTTGTGGAATCTGC
AguB_F01	D	AACCATGGTTTCGCTGCATACATTGCTAC	NcoI
AguB_Seq		ATTGCGGAGTTGAAAGGCAAT
InlC2_F02	A	AAGTCGACTTCATGGACCAAGCTACCAAT	SalI
InlC2_R954	B	ACCCTTCTGTGCGAAAGATGT
InlC2_F933	C	ACATCTTTCGCACAGAAGGGTGGCAATTAGCTTTTGGGTAGG
InlC2_R02	D	AACCATGGATATTCGGGCTTGCATAAACA	NcoI
InlC2_seq		CGAATCAGAATAAACTGTTGC
Eiic_F01	A	AAGTCGACGCAAAAGTGACAACCCCACTA	SalI
Eiic_R967	B	TGGACAAATTCTTCCTCTTCA
Eiic_F964	C	TGAAGAGGAAGAATTTGTCCACGAGGAAGCAGATTGTGTCAT
Eiic_F01	D	AACCATGGCGCCATTATGCTCTTTCAAAC	NcoI
Eiic_Seq		TATGGTTGGTTCGATTGTAGG
Tkt_F01	A	AAGTCGACAATTGCCGTCTATCTGATCCA	SalI
Tkt_R900	B	CCTTTCTCTATTCACCGCGTA
Tkt_F900	C	TACGCGGTGAATAGAGAAAGGCCTTGGAGACGAAAGAAGATG
Tkt_R01	D	ATACCATGGCAATGTGTCTCCACAAGAACG	NcoI
Tkt_seq		GTTACTGGGTAAAGCGAGAGG
BglG_F01	A	AAGTCGACCCGGTTGCCCTATATTTTAGC	SalI
BglG_R975	B	CGCTGTCAATGGGTTTTGTTA
BglG_F936	C	TAACAAAACCCATTGACAGCGGCATTACCAGACTACGGTTTCA
BglG_F01	D	AACCATGGCTGCTTGGCTCATATTGGAAA	NcoI
BglG_Seq		GGGTATTATTGCTTGGATATGA
AguB_Comp_F01		AAAGAGCTCATGGTTGAGGTGATAGAAATGA	SacI
AguB_Comp_R01		AAAGTCGACATCTTATAAGCCAGCGCCATT	SalI
InlC2_Comp-F01		AAAGAGCTCAATGGTAGCTGCTATTCTCGGTA	SacI
InlC2_Comp-R01		AAAGTCGACCACTTTGATTGTTTTGCGGAG	SalI
EiiC_Comp_F01		AAAGAGCTCGGAGGATAACTAAATGAGAACGCTTA	SacI
Eiic_Comp_R01		AAAGTCGACTCATCCTTTCTAAATGTCTTCAA	SalI
Tkt_Comp-F01		AAAGAGCTCTACGCGGTGAATAGAGAAAGG	SacI
Tkt_Comp-R01		AAAGTCGACCTTCATCTTCTTTCGTCTCCAAGG	SalI
BglG_Comp_F01		AAAGAGCTCTGGTGATTTGTTTGAGAATTGAG	SacI
BglG_Comp_F01		AAAGTCGACTCGCGGTAACAAGCCTATTAGT	SalI

^a RE stands for restriction enzyme embedded to the 5’ end of the primer. ^b The bold sequences represent the restriction enzyme recognition sites added to primer A and D. Underlined sequences in primer C reflect reverse complemented primer B sequence.

. Briefly, approximately 1 kb fragment of the upstream and the downstream region of each gene was amplified by PCR using genomic DNA from L. monocytogenes strain F2365 as a template. Overlap PCR reactions were used to generate in-frame deletion DNA fragments [81]. These fragments were then cloned into the digested pHoss1 vector and transformed into chemically competent E. coli DH5α. After sequencing, the resulting plasmids were electroporated into L. monocytogenes strain F2365 and selected in BHI plus erythromycin at 30 °C for 3 days. A single colony was streaked onto BHI without erythromycin and incubated at the nonpermissive temperature (42 °C) for two days to allow the plasmid to integrate into the chromosome. This process was repeated three times. Single colonies were then passed three times on BHI broth at 30 °C before spreading BHI agar containing ATc. The induction of secY antisense RNA expression in the presence of ATc inhibits the growth of bacteria that retain the integrated plasmid and allow positive selection for chromosomal excision and loss of the plasmid [82,83]. The presence of mutation in the erythromycin-sensitive clones were verified by colony PCR using the primer pair A and D. Final confirmation of the deletion was confirmed by sanger sequencing. The constructed mutants were designated F2365ΔaguB, F2365ΔinlC2, F2365Δeiic, F2365Δtkt, and F2365ΔbglG.

4.4. Complementation of the Mutant Strains

Complementation procedures were performed by inserting a copy of the wild-type gene with its promoter region into the appropriate mutant strains using the pPL2 site-specific shuttle integration vector [80]. The integration site of pPL2 have no observed effect on virulence phenotypes of Listeria [80]. Briefly, coding fragments of aguB, inlC2, eiic, tkt, and bglG were amplified by PCR using primers listed in Table 3. PCR products were digested with SacI and SalI enzymes, ligated into pPL2, and transformed into E. coli DH5α. To verify the correct assembly of the plasmids, colony PCR and sequencing were performed. The resulting plasmids were then electroporated into L. monocytogenes mutant strains and selected on BHI agar plates containing chloramphenicol. Chromosomal insertion of aguB, inlC2, eiic, tkt, and bglG was confirmed by PCR. Complemented strains generated through this approach were designated F2365ΔaguB::aguB, F2365ΔinlC2::inlC2, F2365Δeiic::eiic, F2365Δtkt::tkt, and F2365ΔbglG::bglG.

4.5. Growth Kinetics of Mutants

Growth F2365 wild-type strain, mutants, and complemented strains in BHI broth and Minimal Medium (MM) [84] at 37 °C were compared. Growth assays were achieved in a 96-well plate. Overnight cultures of each strain in BHI were adjusted to an optical density at λ = 600 nm (OD600) of 1.00 and diluted 1:50 into BHI or MM. The plates were incubated in a Multi-Mode Reader (BioTek Cytation 5) at 37 °C for 24 h. OD600 was measured every hour. All growth experiments were performed in three independent experiments, and each experiment was run with six replicates.

4.6. Adherence and Invasion Assay

Adherence of L. monocytogenes F2365 wild-type, mutant, and complemented strains to Caco-2 epithelial cells was evaluated as described [85]. In brief, Caco-2 cells were seeded into 24-well tissue culture plates at 10⁵ cells per well. The cells were infected with bacteria (10⁶ CFU) at a multiplicity of infection (MOI) of 10 bacteria per cell and incubated at 37 °C for 1 h in the presence of 5% CO_2, after which the medium was removed. Infected monolayer cells were then washed three times with phosphate-buffered saline (PBS) to eliminate non-adherent bacteria and lysed with 0.5% Triton X-100. Appropriate serial dilutions were prepared in PBS and spread on BHI agar for enumeration of bacterial cells. Adherence assay were performed in three independent experiments with four biological replicates for each infection.

L. monocytogenes F2365, mutant, and complemented strains were tested for their ability to invade Caco-2 cells as described previously [86]. Bacteria were added to the Caco-2 cell monolayer to yield MOI of 10 bacteria per cell and incubated at 37 °C for 1 h. Infected cells were washed three times with PBS and incubated in medium containing gentamicin (100 μg/mL) for 2.5 h to kill extracellular bacteria. Gentamicin (100 μg/mL) was used to rapidly eliminate extracellular bacteria and prevent further infection by bacteria released from dead cells [87]. Aminoglycosides poorly penetrate the eukaryotic cell membrane when used in the incubation medium for short periods (usually less than 4 h) [88,89]. Cells were then washed three times with PBS and lysed using 0.5% Triton X-100 for 10 min. Appropriate dilutions of the lysates were spread on BHI agar. Three independent experiments were performed with four biological replicates for each infection.

4.7. Virulence in Mice

The virulence of L. monocytogenes strain F2365, mutant strains, and complemented strains were compared in a mouse infection model as previously described [86]. Sixty 8-week-old specific pathogen-free female BALB/c mice (Jackson Laboratory, Sacramento, CA, USA) were housed in 12 cages (5 mice/cage) according to treatment groups. Bacteria were harvested at an OD₆₀₀ of ∼1.0 and washed with PBS. The bacterial density in overnight cultures was estimated from a previously prepared standard curve that correlated OD₆₀₀ to viable-bacteria numbers. Average CFU was calculated based on serial dilutions and calculating the average colony numbers on agar plates. The OD₆₀₀ was adjusted so that approximately 5 × 10⁴ CFU of each bacterial strain was inoculated intraperitoneally in each mouse in 100 μL of sterile PBS. Five mice were used for each strain. Mice were visually evaluated every two hours during the day for signs of illness or discomfort throughout the experiment. At 72 h post-infection, mice were euthanized followed by collection of liver and spleen samples. Tissue samples were weighed and homogenized in PBS. Homogenates were serially diluted and spread on BHI agar to determine numbers of viable bacteria.

4.8. Statistical Analysis

The data from adhesion, invasion, and in vivo virulence are presented as mean ± standard error (SE). The dot plots of bacterial numbers in each mouse were generated using GraphPad Prism 8 software, along with the median values. For in vivo experiment, a non-parametric Mann-Whitney test was used to detect the statistical significance in bacterial load in liver and spleen of infected mice between F2365 parent strain, mutants, and complemented strains. p values < 0.05 were considered statistically significant in all analyses. Statistical analysis of adhesion and invasion assays were performed as previously described [86]. Briefly, visual assessment of histograms using PROC UNIVARIATE in SAS for Windows v9.4 (SAS Institute Inc., Cary, NC, USA) indicated that the data was approximately normally distributed following log₁₀ transformation. Pairwise comparison of means was conducted with Tukey’s test. Analysis of variance (ANOVA) was performed using PROC GLM in SAS for Windows v9.4 to assess significant differences.