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Algorithms 2008, 1(2), 100-129; doi:10.3390/a1020100

Mathematical Programming in Computational Biology: an Annotated Bibliography

Dipartimento di Matematica e Informatica, Universit`a di Udine, Via delle Scienze 206, 33100 Udine, Italy
Received: 16 September 2008 / Revised: 3 October 2008 / Accepted: 20 November 2008 / Published: 24 November 2008
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Abstract

The field of computational biology has experienced a tremendous growth in the past 15 years. In this bibliography, we survey some of the most significant contributions that were made to the field and which employ mathematical programming techniques, while giving a broad overview of application areas of modern computational molecular biology. The areas include sequence analysis, microarrays, protein structure and function, haplotyping and evolutionary distances.
Keywords: Mathematical Programming; Integer Programming; Linear Programming; Computational Biology; Bioinformatics; Sequencing; Haplotyping; Protein Structures Mathematical Programming; Integer Programming; Linear Programming; Computational Biology; Bioinformatics; Sequencing; Haplotyping; Protein Structures
This is an open access article distributed under the Creative Commons Attribution License (CC BY 3.0).

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Lancia, G. Mathematical Programming in Computational Biology: an Annotated Bibliography. Algorithms 2008, 1, 100-129.

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