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Functional and Structural Overview of G-Protein-Coupled Receptors Comprehensively Obtained from Genome Sequences
Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST), 10th Floor, AIST Waterfront Annex Building, 2-4-7 Aomi, Kotou-ku, Tokyo 135-0064, Japan
Information and Mathematical Science Lab. Inc., Meikei Building, 1-5-21 Ootsuka, Bunkyou-ku, Tokyo 112-0012, Japan
* Author to whom correspondence should be addressed.
Received: 17 February 2011; in revised form: 2 April 2011 / Accepted: 6 April 2011 / Published: 13 April 2011
Abstract: An understanding of the functional mechanisms of G-protein-coupled receptors (GPCRs) is very important for GPCR-related drug design. We have developed an integrated GPCR database (SEVENS http://sevens.cbrc.jp/) that includes 64,090 reliable GPCR genes comprehensively identified from 56 eukaryote genome sequences, and overviewed the sequences and structure spaces of the GPCRs. In vertebrates, the number of receptors for biological amines, peptides, etc. is conserved in most species, whereas the number of chemosensory receptors for odorant, pheromone, etc. significantly differs among species. The latter receptors tend to be single exon type or a few exon type and show a high ratio in the numbers of GPCRs, whereas some families, such as Class B and Class C receptors, have long lengths due to the presence of many exons. Statistical analyses of amino acid residues reveal that most of the conserved residues in Class A GPCRs are found in the cytoplasmic half regions of transmembrane (TM) helices, while residues characteristic to each subfamily found on the extracellular half regions. The 69 of Protein Data Bank (PDB) entries of complete or fragmentary structures could be mapped on the TM/loop regions of Class A GPCRs covering 14 subfamilies.
Keywords: GPCR; SEVENS database; genome; gene structure; PDB
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Suwa, M.; Sugihara, M.; Ono, Y. Functional and Structural Overview of G-Protein-Coupled Receptors Comprehensively Obtained from Genome Sequences. Pharmaceuticals 2011, 4, 652-664.
Suwa M, Sugihara M, Ono Y. Functional and Structural Overview of G-Protein-Coupled Receptors Comprehensively Obtained from Genome Sequences. Pharmaceuticals. 2011; 4(4):652-664.
Suwa, Makiko; Sugihara, Minoru; Ono, Yukiteru. 2011. "Functional and Structural Overview of G-Protein-Coupled Receptors Comprehensively Obtained from Genome Sequences." Pharmaceuticals 4, no. 4: 652-664.