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Int. J. Mol. Sci. 2016, 17(6), 814; doi:10.3390/ijms17060814

Role of Mitochondrial DNA Copy Number Alteration in Human Renal Cell Carcinoma

Faculty of Medicine, National Yang-Ming University, Taipei 112, Taiwan
Institute of Clinical Medicine, National Yang-Ming University, Taipei 112, Taiwan
Division of Thoracic Surgery, Taipei Hospital, Ministry of Health and Welfare, New Taipei City 242, Taiwan
Division of Thoracic Surgery, Feng-Yuan Hospital, Ministry of Health and Welfare, Taichung City 420, Taiwan
Department of Medicine, Mackay Medical College, New Taipei City 252, Taiwan
Division of Allergy, Immunology and Rheumatology, Mackay Memorial Hospital, Taipei 104, Taiwan
Division of Urology, Feng-Yuan Hospital, Ministry of Health and Welfare, Taichung City 420, Taiwan
Institute of Biochemistry and Molecular Biology, National Yang-Ming University, Taipei 112, Taiwan
Department of Life Sciences and Institute of Genome Sciences, National Yang-Ming University, Taipei 112, Taiwan
Division of Urology, Taipei City Hospital, Ren-Ai Branch, Taipei 106, Taiwan
Part of the results were reported at the 32nd World Congress of Endourogy & SWL, 2014, Taipei, Taiwan, and the abstract was published in Journal of Endourology, Volume 28, Supplement 1, p1 (MP01-01), September 2014
Authors to whom correspondence should be addressed.
Academic Editor: Li Yang
Received: 4 April 2016 / Revised: 9 May 2016 / Accepted: 10 May 2016 / Published: 25 May 2016
(This article belongs to the Special Issue Tumor Microenvironment and Metabolism)
View Full-Text   |   Download PDF [1308 KB, uploaded 25 May 2016]   |  


We investigated the role of mitochondrial DNA (mtDNA) copy number alteration in human renal cell carcinoma (RCC). The mtDNA copy numbers of paired cancer and non-cancer parts from five resected RCC kidneys after radical nephrectomy were determined by quantitative polymerase chain reaction (Q-PCR). An RCC cell line, 786-O, was infected by lentiviral particles to knock down mitochondrial transcriptional factor A (TFAM). Null target (NT) and TFAM-knockdown (TFAM-KD) represented the control and knockdown 786-O clones, respectively. Protein or mRNA expression levels of TFAM; mtDNA-encoded NADH dehydrogenase subunit 1 (ND1), ND6 and cytochrome c oxidase subunit 2 (COX-2); nuclear DNA (nDNA)-encoded succinate dehydrogenase subunit A (SDHA); v-akt murine thymoma viral oncogene homolog 1 gene (AKT)-encoded AKT and v-myc myelocytomatosis viral oncogene homolog gene (c-MYC)-encoded MYC; glycolytic enzymes including hexokinase II (HK-II), glucose 6-phosphate isomerase (GPI), phosphofructokinase (PFK), and lactate dehydrogenase subunit A (LDHA); and hypoxia-inducible factors the HIF-1α and HIF-2α, pyruvate dehydrogenase kinase 1 (PDK1), and pyruvate dehydrogenase E1 component α subunit (PDHA1) were analyzed by Western blot or Q-PCR. Bioenergetic parameters of cellular metabolism, basal mitochondrial oxygen consumption rate (mOCRB) and basal extracellular acidification rate (ECARB), were measured by a Seahorse XFe-24 analyzer. Cell invasiveness was evaluated by a trans-well migration assay and vimentin expression. Doxorubicin was used as a chemotherapeutic agent. The results showed a decrease of mtDNA copy numbers in resected RCC tissues (p = 0.043). The TFAM-KD clone expressed lower mtDNA copy number (p = 0.034), lower mRNA levels of TFAM (p = 0.008), ND1 (p = 0.007), and ND6 (p = 0.017), and lower protein levels of TFAM and COX-2 than did the NT clone. By contrast, the protein levels of HIF-2α, HK-II, PFK, LDHA, AKT, MYC and vimentin; trans-well migration activity (p = 0.007); and drug resistance to doxorubicin (p = 0.008) of the TFAM-KD clone were significantly higher than those of the NT clone. Bioenergetically, the TFAM-KD clone expressed lower mOCRB (p = 0.009) but higher ECARB (p = 0.037) than did the NT clone. We conclude that a reduction of mtDNA copy number and decrease of respiratory function of mitochondria in RCC might be compensated for by an increase of enzymes and factors that are involved in the upregulation of glycolysis to confer RCC more invasive and a drug-resistant phenotype in vitro. View Full-Text
Keywords: renal cell carcinoma; mitochondrial DNA copy number; mitochondrial biogenesis; Warburg effect; invasiveness renal cell carcinoma; mitochondrial DNA copy number; mitochondrial biogenesis; Warburg effect; invasiveness

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Lin, C.-S.; Lee, H.-T.; Lee, M.-H.; Pan, S.-C.; Ke, C.-Y.; Chiu, A.W.-H.; Wei, Y.-H. Role of Mitochondrial DNA Copy Number Alteration in Human Renal Cell Carcinoma. Int. J. Mol. Sci. 2016, 17, 814.

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