14 pages, 993 KiB  
Article
Strawberry Achenes Are an Important Source of Bioactive Compounds for Human Health
by María Teresa Ariza 1,*, Patricia Reboredo-Rodríguez 2, Luca Mazzoni 3, Tamara Yuliett Forbes-Hernández 4, Francesca Giampieri 4, Sadia Afrin 4, Massimiliano Gasparrini 4, Carmen Soria 1, Elsa Martínez-Ferri 1, Maurizio Battino 4 and Bruno Mezzetti 3,*
1 Instituto Andaluz de Investigación y Formación Agraria y Pesquera (IFAPA), Consejería de Agricultura, Pesca y Desarrollo Rural, Junta de Andalucía, IFAPA de Churriana, Cortijo de la Cruz s/n, Churriana, 29140 Málaga, Spain
2 Área de Nutrición y Bromatología, Departamento de Química Analítica y Alimentaria, Universidad de Vigo, Campus de Ourense, E-32004 Ourense, Spain
3 Dipartimento di Scienze Agrarie, Alimentari e Ambientali, Università Politecnica delle Marche, Ancona 60131, Italy
4 Department of Clinical Sciences, Faculty of Medicine, Polytechnic University of Marche, Ancona 60131, Italy
Int. J. Mol. Sci. 2016, 17(7), 1103; https://doi.org/10.3390/ijms17071103 - 11 Jul 2016
Cited by 64 | Viewed by 9409
Abstract
Strawberries are highly appreciated for their taste, nutritional value and antioxidant compounds, mainly phenolics. Fruit antioxidants derive from achenes and flesh, but achene contribution to the total fruit antioxidant capacity and to the bioaccessibility after intake is still unknown. In this work, the [...] Read more.
Strawberries are highly appreciated for their taste, nutritional value and antioxidant compounds, mainly phenolics. Fruit antioxidants derive from achenes and flesh, but achene contribution to the total fruit antioxidant capacity and to the bioaccessibility after intake is still unknown. In this work, the content of total phenolic compounds, flavonoids, anthocyanins and antioxidant capacity (TEAC, FRAP and DPPH) of achenes and flesh were compared in non-digested as well as in gastric and intestinal extracts after in vitro digestion. Results showed that, despite strawberry achenes represent a small fraction of the fruit, their contribution to total fruit antioxidant content was more than 41% and accounted for 81% of antioxidant capacity (TEAC). Achenes have higher quantity and different quality of antioxidants in non-digested and digested extracts. Antioxidant release was higher in the in vitro gastric digested extracts, but digestion conditions did not only affect quantity but quality, resulting in differences in antioxidant capacity and highlighting the importance of simulating physiological-like extraction conditions for assessing fruit antioxidant properties on human health. These results give new insights into the use of strawberry achenes as a source of bioactive compounds to be considered in strawberry breeding programs for improving human health. Full article
(This article belongs to the Special Issue Macro- and Micro-nutrient Antioxidants)
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10 pages, 2244 KiB  
Article
Inhibition of AQP1 Hampers Osteosarcoma and Hepatocellular Carcinoma Progression Mediated by Bone Marrow-Derived Mesenchymal Stem Cells
by Alessandra Pelagalli 1,2,*, Anna Nardelli 2, Raffaela Fontanella 2 and Antonella Zannetti 2,*
1 Dipartimento di Scienze Biomediche Avanzate, Università degli Studi di Napoli “Federico II”, Via Pansini No. 5, 80131 Napoli, Italy
2 Istituto di Biostrutture e Bioimmagini-CNR, Via De Amicis No. 95, 80145 Napoli, Italy
Int. J. Mol. Sci. 2016, 17(7), 1102; https://doi.org/10.3390/ijms17071102 - 11 Jul 2016
Cited by 44 | Viewed by 7538
Abstract
The complex cross-talk between tumor cells and their surrounding stromal environment plays a key role in the pathogenesis of cancer. Among several cell types that constitute the tumor stroma, bone marrow-derived mesenchymal stem cells (BM-MSCs) selectively migrate toward the tumor microenvironment and contribute [...] Read more.
The complex cross-talk between tumor cells and their surrounding stromal environment plays a key role in the pathogenesis of cancer. Among several cell types that constitute the tumor stroma, bone marrow-derived mesenchymal stem cells (BM-MSCs) selectively migrate toward the tumor microenvironment and contribute to the active formation of tumor-associated stroma. Therefore, here we elucidate the involvement of BM-MSCs to promote osteosarcoma (OS) and hepatocellular carcinoma (HCC) cells migration and invasion and deepening the role of specific pathways. We analyzed the function of aquaporin 1 (AQP1), a water channel known to promote metastasis and neoangiogenes. AQP1 protein levels were analyzed in OS (U2OS) and HCC (SNU-398) cells exposed to conditioned medium from BM-MSCs. Tumor cell migration and invasion in response to BM-MSC conditioned medium were evaluated through a wound healing assay and Boyden chamber, respectively. The results showed that the AQP1 level was increased in both tumor cell lines after treatment with BM-MSC conditioned medium. Moreover, BM-MSCs-mediated tumor cell migration and invasion were hampered after treatment with AQP1 inhibitor. These data suggest that the recruitment of human BM-MSCs into the tumor microenvironment might cause OS and HCC cell migration and invasion through involvement of AQP1. Full article
(This article belongs to the Special Issue Aquaporin)
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24 pages, 6016 KiB  
Article
Identification of Pathways in Liver Repair Potentially Targeted by Secretory Proteins from Human Mesenchymal Stem Cells
by Sandra Winkler 1, Madlen Hempel 1, Sandra Brückner 1, Hans-Michael Tautenhahn 1, Roland Kaufmann 2 and Bruno Christ 1,*
1 Applied Molecular Hepatology Laboratory, Department of Visceral, Transplantation, Thoracic and Vascular Surgery, University Hospital of Leipzig, Liebigstraße 21, 04103 Leipzig, Germany
2 Department of General, Visceral and Vascular Surgery, Jena University Hospital, Erlanger Allee 101, 07747 Jena, Germany
Int. J. Mol. Sci. 2016, 17(7), 1099; https://doi.org/10.3390/ijms17071099 - 9 Jul 2016
Cited by 22 | Viewed by 7439
Abstract
Background: The beneficial impact of mesenchymal stem cells (MSC) on both acute and chronic liver diseases has been confirmed, although the molecular mechanisms behind it remain elusive. We aim to identify factors secreted by undifferentiated and hepatocytic differentiated MSC in vitro in order [...] Read more.
Background: The beneficial impact of mesenchymal stem cells (MSC) on both acute and chronic liver diseases has been confirmed, although the molecular mechanisms behind it remain elusive. We aim to identify factors secreted by undifferentiated and hepatocytic differentiated MSC in vitro in order to delineate liver repair pathways potentially targeted by MSC. Methods: Secreted factors were determined by protein arrays and related pathways identified by biomathematical analyses. Results: MSC from adipose tissue and bone marrow expressed a similar pattern of surface markers. After hepatocytic differentiation, CD54 (intercellular adhesion molecule 1, ICAM-1) increased and CD166 (activated leukocyte cell adhesion molecule, ALCAM) decreased. MSC secreted different factors before and after differentiation. These comprised cytokines involved in innate immunity and growth factors regulating liver regeneration. Pathway analysis revealed cytokine-cytokine receptor interactions, chemokine signalling pathways, the complement and coagulation cascades as well as the Januskinase-signal transducers and activators of transcription (JAK-STAT) and nucleotide-binding oligomerization domain-like receptor (NOD-like receptor) signalling pathways as relevant networks. Relationships to transforming growth factor β (TGF-β) and hypoxia-inducible factor 1-α (HIF1-α) signalling seemed also relevant. Conclusion: MSC secreted proteins, which differed depending on cell source and degree of differentiation. The factors might address inflammatory and growth factor pathways as well as chemo-attraction and innate immunity. Since these are prone to dysregulation in most liver diseases, MSC release hepatotropic factors, potentially supporting liver regeneration. Full article
(This article belongs to the Special Issue Advances in Cell Transplantation)
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10 pages, 381 KiB  
Article
Common Genetic Variation in CYP17A1 and Response to Abiraterone Acetate in Patients with Metastatic Castration-Resistant Prostate Cancer
by Moritz Binder 1, Ben Y. Zhang 2, David W. Hillman 3, Rhea Kohli 4, Tanvi Kohli 4, Adam Lee 5 and Manish Kohli 2,*
1 Department of Internal Medicine, Mayo Clinic, 200 First Street SW, Rochester, MN 55905, USA
2 Department of Oncology, Mayo Clinic, 200 First Street SW, Rochester, MN 55905, USA
3 Division of Biomedical Statistics and Informatics, Mayo Clinic, 200 First Street SW, Rochester, MN 55905, USA
4 Mayo High School, 1420 11th Avenue SE, Rochester, MN 55904, USA
5 Experimental and Clinical Pharmacology Department, University of Minnesota, 515 Delaware St. SE, Minneapolis, MN 55455, USA
Int. J. Mol. Sci. 2016, 17(7), 1097; https://doi.org/10.3390/ijms17071097 - 9 Jul 2016
Cited by 20 | Viewed by 5463
Abstract
Treatment with abiraterone acetate and prednisone (AA/P) prolongs survival in metastatic castration-resistant prostate cancer (mCRPC) patients. We evaluated the genetic variation in CYP17A1 as predictive of response to AA/P. A prospective collection of germline DNA prior to AA/P initiation and follow-up of a [...] Read more.
Treatment with abiraterone acetate and prednisone (AA/P) prolongs survival in metastatic castration-resistant prostate cancer (mCRPC) patients. We evaluated the genetic variation in CYP17A1 as predictive of response to AA/P. A prospective collection of germline DNA prior to AA/P initiation and follow-up of a mCRPC cohort was performed. Five common single-nucleotide polymorphisms (SNPs) in CYP17A1 identified using a haplotype-based tagging algorithm were genotyped. Clinical outcomes included biochemical response and time to biochemical progression on AA/P. Logistic regression was used to assess the association between tag SNPs and biochemical response. Proportional hazards regression was used to assess the association between tag SNPs and time to biochemical progression. Odds or hazard ratio per minor allele were estimated and p-values below 0.05 were considered statistically significant. Germline DNA was successfully genotyped for four tag SNPs in 87 patients. The median age was 73 years (54–90); the median prostate-specific antigen was 66 ng/dL (0.1–99.9). A single SNP, rs2486758, was associated with lower odds of experiencing a biochemical response (Odds ratio 0.22, 95% confidence interval 0.07–0.63, p = 0.005) and a shorter time to biochemical progression (Hazard ratio 2.23, 95% confidence interval 1.39–3.56, p < 0.001). This tag SNP located in the promoter region of CYP17A1 will need further validation as a predictive biomarker for AA/P therapy. Full article
(This article belongs to the Special Issue Precision Medicine—From Bench to Bedside)
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20 pages, 2867 KiB  
Review
Hepatocyte and Sertoli Cell Aquaporins, Recent Advances and Research Trends
by Raquel L. Bernardino 1, Raul A. Marinelli 2, Anna Maggio 3, Patrizia Gena 3, Ilaria Cataldo 3, Marco G. Alves 4, Maria Svelto 3, Pedro F. Oliveira 1,5,* and Giuseppe Calamita 3,*
1 Department of Microscopy, Laboratory of Cell Biology, Institute of Biomedical Sciences Abel Salazar (ICBAS) and Unit for Multidisciplinary Research in Biomedicine (UMIB), University of Porto, 4050-313 Porto, Portugal
2 Instituto de Fisiología Experimental-CONICET, Facultad de Ciencias Bioquímicas y Farmacéuticas-Universidad Nacional de Rosario, 531 S2002LRK Rosario, Santa Fe, Argentina
3 Department of Biosciences, Biotechnologies and Biopharnaceutics, University of Bari “Aldo Moro”, 70125 Bari, Italy
4 CICS-UBI, Health Sciences Research Centre, University of Beira Interior, 6201-506 Covilhã, Portugal
5 Instituto de Investigação e Inovação em Saúde, Universidade do Porto, 4200-135 Porto, Portugal
Int. J. Mol. Sci. 2016, 17(7), 1096; https://doi.org/10.3390/ijms17071096 - 9 Jul 2016
Cited by 28 | Viewed by 12271
Abstract
Aquaporins (AQPs) are proteinaceous channels widespread in nature where they allow facilitated permeation of water and uncharged through cellular membranes. AQPs play a number of important roles in both health and disease. This review focuses on the most recent advances and research trends [...] Read more.
Aquaporins (AQPs) are proteinaceous channels widespread in nature where they allow facilitated permeation of water and uncharged through cellular membranes. AQPs play a number of important roles in both health and disease. This review focuses on the most recent advances and research trends regarding the expression and modulation, as well as physiological and pathophysiological functions of AQPs in hepatocytes and Sertoli cells (SCs). Besides their involvement in bile formation, hepatocyte AQPs are involved in maintaining energy balance acting in hepatic gluconeogenesis and lipid metabolism, and in critical processes such as ammonia detoxification and mitochondrial output of hydrogen peroxide. Roles are played in clinical disorders including fatty liver disease, diabetes, obesity, cholestasis, hepatic cirrhosis and hepatocarcinoma. In the seminiferous tubules, particularly in SCs, AQPs are also widely expressed and seem to be implicated in the various stages of spermatogenesis. Like in hepatocytes, AQPs may be involved in maintaining energy homeostasis in these cells and have a major role in the metabolic cooperation established in the testicular tissue. Altogether, this information represents the mainstay of current and future investigation in an expanding field. Full article
(This article belongs to the Special Issue Aquaporin)
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9 pages, 1178 KiB  
Article
Regulation of Intestinal Epithelial Calcium Transport Proteins by Stanniocalcin-1 in Caco2 Cells
by Jinmei Xiang 1,2,†, Rui Guo 3,†, Chunyun Wan 1,4,†, Liming Wu 1, Shijin Yang 1 and Dingzong Guo 1,*
1 College of Veterinary Medicine, Huazhong Agricultural University, Wuhan 430070, Hubei, China
2 Department of Animal Science, Hubei Vocational College Of Bio-Technology, Wuhan 430070, Hubei, China
3 Hubei Key Laboratory of Embryo and Molecular Breeding, Hubei Academy of Agricultural Sciences, Wuhan 430064, Hubei, China
4 College of Animal Science, Yangtze University, Jingzhou 434023, Hubei, China
These authors contributed equally to this study.
Int. J. Mol. Sci. 2016, 17(7), 1095; https://doi.org/10.3390/ijms17071095 - 9 Jul 2016
Cited by 15 | Viewed by 6251
Abstract
Stanniocalcin-1 (STC1) is a calcium and phosphate regulatory hormone. However, the exact molecular mechanisms underlying how STC1 affects Ca2+ uptake remain unclear. Here, the expression levels of the calcium transport proteins involved in transcellular transport in Caco2 cells were examined following over-expression [...] Read more.
Stanniocalcin-1 (STC1) is a calcium and phosphate regulatory hormone. However, the exact molecular mechanisms underlying how STC1 affects Ca2+ uptake remain unclear. Here, the expression levels of the calcium transport proteins involved in transcellular transport in Caco2 cells were examined following over-expression or inhibition of STC1. These proteins include the transient receptor potential vanilloid members (TRPV) 5 and 6, the plasma membrane calcium ATPase 1b (PMCA1b), the sodium/calcium exchanger (NCX1), and the vitamin D receptor (VDR). Both gene and protein expressions of TRPV5 and TRPV6 were attenuated in response to over-expression of STC1, and the opposite trend was observed in cells treated with siRNASTC1. To further investigate the ability of STC1 to influence TRPV6 expression, cells were treated with 100 ng/mL of recombinant human STC1 (rhSTC1) for 4 h following pre-transfection with siRNASTC1 for 48 h. Intriguingly, the increase in the expression of TRPV6 resulting from siRNASTC1 was reversed by rhSTC1. No significant effect of STC1 on the expression of PMCA1b, NCX1 or VDR was observed in this study. In conclusion, the effect of STC1 on calcium transport in intestinal epithelia is due to, at least in part, its negative regulation of the epithelial channels TRPV5/6 that mediate calcium influx. Full article
(This article belongs to the Special Issue Calcium Regulation and Sensing)
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14 pages, 411 KiB  
Article
Replacement of Oxygen by Sulfur in Small Organic Molecules. 3. Theoretical Studies on the Tautomeric Equilibria of the 2OH and 4OH-Substituted Oxazole and Thiazole and the 3OH and 4OH-Substituted Isoxazole and Isothiazole in the Isolated State and in Solution
by Peter I. Nagy
Center for Drug Design and Development, The University of Toledo, Toledo, OH 43606, USA
Int. J. Mol. Sci. 2016, 17(7), 1094; https://doi.org/10.3390/ijms17071094 - 9 Jul 2016
Cited by 5 | Viewed by 6957
Abstract
This follow-up paper completes the author’s investigations to explore the in-solution structural preferences and relative free energies of all OH-substituted oxazole, thiazole, isoxazole, and isothiazole systems. The polarizable continuum dielectric solvent method calculations in the integral-equation formalism (IEF-PCM) were performed at the DFT/B97D/aug-cc-pv(q+(d))z [...] Read more.
This follow-up paper completes the author’s investigations to explore the in-solution structural preferences and relative free energies of all OH-substituted oxazole, thiazole, isoxazole, and isothiazole systems. The polarizable continuum dielectric solvent method calculations in the integral-equation formalism (IEF-PCM) were performed at the DFT/B97D/aug-cc-pv(q+(d))z level for the stable neutral tautomers with geometries optimized in dichloromethane and aqueous solution. With the exception of the predictions for the predominant tautomers of the 3OH isoxazole and isothiazole, the results of the IEF-PCM calculations for identifying the most stable tautomer of the given species in the two selected solvents agreed with those from experimental investigations. The calculations predict that the hydroxy proton, with the exception for the 4OH isoxazole and 4OH isothiazole, moves preferentially to the ring nitrogen or to a ring carbon atom in parallel with the development of a C=O group. The remaining, low-fraction OH tautomers will not be observable in the equilibrium compositions. Relative solvation free energies obtained by the free energy perturbation method implemented in Monte Carlo simulations are in moderate accord with the IEF-PCM results, but consideration of the ΔGsolv/MC values in calculating ΔGstot maintains the tautomeric preferences. It was revealed from the Monte Carlo solution structure analyses that the S atom is not a hydrogen-bond acceptor in any OH-substituted thiazole or isothiazole, and the OH-substituted isoxazole and oxazole ring oxygens may act as a weak hydrogen-bond acceptor at most. The molecules form 1.0−3.4 solute−water hydrogen bonds in generally unexplored numbers at some specific solute sites. Nonetheless, hydrogen-bond formation is favorable with the NH, C=O and OH groups. Full article
(This article belongs to the Special Issue Chemical Bond and Bonding 2016)
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9 pages, 1790 KiB  
Article
Expression of Tenascin C, EGFR, E-Cadherin, and TTF-1 in Medullary Thyroid Carcinoma and the Correlation with RET Mutation Status
by Florian Steiner 1, Cornelia Hauser-Kronberger 1, Gundula Rendl 2, Margarida Rodrigues 2 and Christian Pirich 2,*
1 Department of Pathology, Paracelsus Medical University Salzburg, Müllner Hauptstrasse 48, A-5020 Salzburg, Austria
2 Department of Nuclear Medicine and Endocrinology, Paracelsus Medical University Salzburg, Müllner Hauptstrasse 48, A-5020 Salzburg, Austria
Int. J. Mol. Sci. 2016, 17(7), 1093; https://doi.org/10.3390/ijms17071093 - 9 Jul 2016
Cited by 11 | Viewed by 5388
Abstract
Tenascin C expression correlates with tumor grade and indicates worse prognosis in several tumors. Epidermal growth factor receptor (EGFR) plays an important role in driving proliferation in many tumors. Loss of E-cadherin function is associated with tumor invasion and metastasis. Thyroid transcription factor-1 [...] Read more.
Tenascin C expression correlates with tumor grade and indicates worse prognosis in several tumors. Epidermal growth factor receptor (EGFR) plays an important role in driving proliferation in many tumors. Loss of E-cadherin function is associated with tumor invasion and metastasis. Thyroid transcription factor-1 (TTF-1) is involved in rearranged during transfection (RET) transcription in Hirschsprung’s disease. Tenascin C, EGFR, E-cadherin, TTF-1-expression, and their correlations with RET mutation status were investigated in 30 patients with medullary thyroid carcinoma (MTC) (n = 26) or C-cell hyperplasia (n = 4). Tenascin C was found in all, EGFR in 4/26, E-cadherin in 23/26, and TTF-1 in 25/26 MTC. Tenascin C correlated significantly with tumor proliferation (overall, r = 0.61, p < 0.005; RET-mutated, r = 0.81, p < 0.01). E-cadherin showed weak correlation, whereas EGFR and TTF-1 showed no significant correlation with tumor proliferation. EGFR, E-cadherin, and TTF-1 showed weak correlation with proliferation of RET-mutated tumors. Correlation between TTF-1 and tenascin C, E-cadherin, and EGFR was r = −0.10, 0.37, and 0.21, respectively. In conclusion, MTC express tenascin C, E-cadherin, and TTF-1. Tenascin C correlates significantly with tumor proliferation, especially in RET-mutated tumors. EGFR is low, and tumors expressing EGFR do not exhibit higher proliferation. TTF-1 does not correlate with RET mutation status and has a weak correlation with tenascin C, E-cadherin, and EGFR expression. Full article
(This article belongs to the Special Issue Current Knowledge in Thyroid Cancer—From Bench to Bedside)
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11 pages, 467 KiB  
Article
MMP-9 Serum Levels in Schizophrenic Patients during Treatment Augmentation with Sarcosine (Results of the PULSAR Study)
by Dominik Strzelecki 1,*, Olga Kałużyńska 1, Justyna Szyburska 1 and Adam Wysokiński 2
1 Department of Affective and Psychotic Disorders, Medical University of Łódź, Central Clinical Hospital, Czechosłowacka 8/10, 92-216 Łódź, Poland
2 Department of Old Age Psychiatry and Psychotic Disorders, Medical University of Łódź, Central Clinical Hospital, Czechosłowacka 8/10, 92-216 Łódź, Poland
Int. J. Mol. Sci. 2016, 17(7), 1075; https://doi.org/10.3390/ijms17071075 - 9 Jul 2016
Cited by 11 | Viewed by 5454
Abstract
Aim: Find changes in matrix metallopeptidase-9 (MMP-9) levels during augmentation of antipsychotic treatment with sarcosine and a relationship between schizophrenia symptoms severity and initial level of MMP-9. Method: Fifty-eight patients with diagnosis of schizophrenia with predominant negative symptoms participated in a six-month prospective [...] Read more.
Aim: Find changes in matrix metallopeptidase-9 (MMP-9) levels during augmentation of antipsychotic treatment with sarcosine and a relationship between schizophrenia symptoms severity and initial level of MMP-9. Method: Fifty-eight patients with diagnosis of schizophrenia with predominant negative symptoms participated in a six-month prospective RCT (randomized controlled trial). The patients received two grams of sarcosine (n = 28) or placebo (n = 30) daily. At the beginning, after six weeks and after six months MMP-9 levels were measured. Severity of symptomatology was assessed with the Positive and Negative Syndrome Scale (PANSS) and Calgary Depression Scale for Schizophrenia (CDSS). Results: MMP-9 serum levels were stable after six weeks and six months in both groups. We noted improvement in negative symptoms, general psychopathology and total PANSS score in sarcosine group compared to placebo; however, there was no correlations between serum MMP-9 concentrations and PANSS scores in all assessments. Initial serum MMP-9 concentrations cannot be used as an improvement predictor acquired during sarcosine augmentation. Conclusions: Our results indicate that either MMP-9 is not involved in the N-methyl-d-aspartate (NMDA)-dependent mechanism of sarcosine action in terms of clinical parameters or sarcosine induced changes in peripheral MMP-9 concentrations cannot be detected in blood assessments. Full article
(This article belongs to the Special Issue Metalloproteins)
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10 pages, 5069 KiB  
Article
miR-494-3p Induces Cellular Senescence and Enhances Radiosensitivity in Human Oral Squamous Carcinoma Cells
by Jui-Hung Weng 1, Cheng-Chia Yu 2,3,4,†, Yueh-Chun Lee 5,6,†, Cheng-Wei Lin 7, Wen-Wei Chang 7,8,* and Yu-Liang Kuo 9,10,*
1 Department of Nuclear Medicine, Chung Shan Medical University Hospital, Taichung 40201, Taiwan
2 School of Dentistry, Chung Shan Medical University, Taichung 40201, Taiwan
3 Department of Dentistry, Chung Shan Medical University Hospital, Taichung 40201, Taiwan
4 Institute of Oral Science, Chung Shan Medical University, Taichung 40201, Taiwan
5 Department of Radiation Oncology, Chung Shan Medical University Hospital, Taichung 40201, Taiwan
6 Institute of Medicine, Chung Shan Medical University, Taichung 40201, Taiwan
7 School of Biomedical Sciences, College of Medical Science and Technology, Chung Shan Medical University, Taichung 40201, Taiwan
8 Department of Medical Research, Chung Shan Medical University Hospital, Taichung 40201, Taiwan
9 Department of Medical Imaging and Radiological Sciences, Chung Shan Medical University, Taichung 40201, Taiwan
10 Department of Medical Imaging, Chung Shan Medical University Hospital, Taichung 40201, Taiwan
These authors contributed equally to this work.
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Int. J. Mol. Sci. 2016, 17(7), 1092; https://doi.org/10.3390/ijms17071092 - 8 Jul 2016
Cited by 53 | Viewed by 6316
Abstract
Oral squamous cell carcinoma (OSCC) is the most common malignancy of head and neck. Although radiotherapy is used for OSCC treatment, the occurrence of radioresistant cancer cells limits its efficiency. MicroRNAs (miRNAs) are non-coding RNAs with lengths of 18–25 base pairs and known [...] Read more.
Oral squamous cell carcinoma (OSCC) is the most common malignancy of head and neck. Although radiotherapy is used for OSCC treatment, the occurrence of radioresistant cancer cells limits its efficiency. MicroRNAs (miRNAs) are non-coding RNAs with lengths of 18–25 base pairs and known to be involved in carcinogenesis. We previously demonstrated that by targeting B lymphoma Mo-MLV insertion region 1 homolog (Bmi1), miR-494-3p functions as a putative tumor suppressor miRNA in OSCC. In this study, we further discovered that miR-494-3p could enhance the radiosensitivity of SAS OSCC cells and induce cellular senescence. The overexpression of miR-494-3p in SAS cells increased the population of senescence-associated β-galactosidase positive cells, the expression of p16INK4a and retinoblastoma 1 (RB1), as well as downregulated Bmi1. The knockdown of Bmi1 by lentiviral-mediated delivery of specific short hairpin RNAs (shRNAs) also enhanced the radiosensitivity of SAS cells and the activation of the senescence pathway. Furthermore, the inverse correlation between Bmi1 and miR-494-3p expression was observed among OSCC tissues. Results suggest that miR-494-3p could increase the radiosensitivity of OSCC cells through the induction of cellular senescence caused by the downregulation of Bmi1. Full article
(This article belongs to the Special Issue MicroRNA Regulation)
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19 pages, 4558 KiB  
Article
Piriformospora indica Stimulates Root Metabolism of Arabidopsis thaliana
by Nadine Strehmel 1,*, Susann Mönchgesang 1, Siska Herklotz 1, Sylvia Krüger 1, Jörg Ziegler 2 and Dierk Scheel 1,*
1 Department of Stress and Developmental Biology, Leibniz Institute of Plant Biochemistry, Weinberg 3, 06120 Halle (Saale), Germany
2 Department of Molecular Signal Processing, Leibniz Institute of Plant Biochemistry, Weinberg 3, 06120 Halle (Saale), Germany
Int. J. Mol. Sci. 2016, 17(7), 1091; https://doi.org/10.3390/ijms17071091 - 8 Jul 2016
Cited by 36 | Viewed by 12321
Abstract
Piriformospora indica is a root-colonizing fungus, which interacts with a variety of plants including Arabidopsis thaliana. This interaction has been considered as mutualistic leading to growth promotion of the host. So far, only indolic glucosinolates and phytohormones have been identified as key [...] Read more.
Piriformospora indica is a root-colonizing fungus, which interacts with a variety of plants including Arabidopsis thaliana. This interaction has been considered as mutualistic leading to growth promotion of the host. So far, only indolic glucosinolates and phytohormones have been identified as key players. In a comprehensive non-targeted metabolite profiling study, we analyzed Arabidopsis thaliana’s roots, root exudates, and leaves of inoculated and non-inoculated plants by ultra performance liquid chromatography/electrospray ionization quadrupole-time-of-flight mass spectrometry (UPLC/(ESI)-QTOFMS) and gas chromatography/electron ionization quadrupole mass spectrometry (GC/EI-QMS), and identified further biomarkers. Among them, the concentration of nucleosides, dipeptides, oligolignols, and glucosinolate degradation products was affected in the exudates. In the root profiles, nearly all metabolite levels increased upon co-cultivation, like carbohydrates, organic acids, amino acids, glucosinolates, oligolignols, and flavonoids. In the leaf profiles, we detected by far less significant changes. We only observed an increased concentration of organic acids, carbohydrates, ascorbate, glucosinolates and hydroxycinnamic acids, and a decreased concentration of nitrogen-rich amino acids in inoculated plants. These findings contribute to the understanding of symbiotic interactions between plant roots and fungi of the order of Sebacinales and are a valid source for follow-up mechanistic studies, because these symbioses are particular and clearly different from interactions of roots with mycorrhizal fungi or dark septate endophytes Full article
(This article belongs to the Special Issue Metabolomics in the Plant Sciences)
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13 pages, 1970 KiB  
Article
The Prognostic and Predictive Role of Epidermal Growth Factor Receptor in Surgical Resected Pancreatic Cancer
by Meng Guo 1,2,3,†, Guopei Luo 1,2,3,*,†, Chen Liu 1,2,3,†, He Cheng 1,2,3, Yu Lu 1,2,3, Kaizhou Jin 1,2,3, Zuqiang Liu 1,2,3, Jiang Long 1,2,3, Liang Liu 1,2,3, Jin Xu 1,2,3, Dan Huang 3,4, Quanxing Ni 1,2,3 and Xianjun Yu 1,2,3,*
1 Pancreatic Cancer Institute, Fudan University, Shanghai 200032, China
2 Department of Pancreas Surgery, Fudan University Shanghai Cancer Center, Shanghai 200032, China
3 Department of Oncology, Shanghai Medical College, Fudan University, Shanghai 200032, China
4 Department of Pathology, Fudan University Shanghai Cancer Center, Shanghai 200032, China
These authors contributed equally to this work.
Int. J. Mol. Sci. 2016, 17(7), 1090; https://doi.org/10.3390/ijms17071090 - 8 Jul 2016
Cited by 17 | Viewed by 5855
Abstract
The data regarding the prognostic significance of EGFR (epidermal growth factor receptor) expression and adjuvant therapy in patients with resected pancreatic cancer are insufficient. We retrospectively investigated EGFR status in 357 resected PDAC (pancreatic duct adenocarcinoma) patients using tissue immunohistochemistry and validated the [...] Read more.
The data regarding the prognostic significance of EGFR (epidermal growth factor receptor) expression and adjuvant therapy in patients with resected pancreatic cancer are insufficient. We retrospectively investigated EGFR status in 357 resected PDAC (pancreatic duct adenocarcinoma) patients using tissue immunohistochemistry and validated the possible role of EGFR expression in predicting prognosis. The analysis was based on excluding the multiple confounding parameters. A negative association was found between overall EGFR status and postoperative survival (p = 0.986). Remarkably, adjuvant chemotherapy and radiotherapy were significantly associated with favorable postoperative survival, which prolonged median overall survival (OS) for 5.8 and 10.2 months (p = 0.009 and p = 0.006, respectively). Kaplan–Meier analysis showed that adjuvant chemotherapy correlated with an obvious survival benefit in the EGFR-positive subgroup rather than in the EGFR-negative subgroup. In the subgroup analyses, chemotherapy was highly associated with increased postoperative survival in the EGFR-positive subgroup (p = 0.002), and radiotherapy had a significant survival benefit in the EGFR-negative subgroup (p = 0.029). This study demonstrated that EGFR expression is not correlated with outcome in resected pancreatic cancer patients. Adjuvant chemotherapy and radiotherapy were significantly associated with improved survival in contrary EGFR expressing subgroup. Further studies of EGFR as a potential target for pancreatic cancer treatment are warranted. Full article
(This article belongs to the Special Issue Pancreatic Disorders)
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8 pages, 632 KiB  
Article
Liver Fat Measured by MR Spectroscopy: Estimate of Imprecision and Relationship with Serum Glycerol, Caeruloplasmin and Non-Esterified Fatty Acids
by Michael France 1,*, See Kwok 2, Handrean Soran 3, Steve Williams 4, Jan Hoong Ho 3,*, Safwaan Adam 4, Dexter Canoy 5, Yifen Liu 6 and Paul N. Durrington 6
1 Department of Clinical Biochemistry, Cobbett House, Central Manchester Foundation Trust, Oxford Road, Manchester M13 9WL, UK
2 Cardiovascular Trials Unit, The Old St Mary’s Hospital, Hathersage Road, Oxford Road, Manchester M13 9WL, UK
3 Department of Medicine, Central Manchester Foundation Trust, Oxford Road, Manchester M13 9WL, UK
4 Department of Imaging Science, University of Manchester, Oxford Road, Manchester M13 9PT, UK
5 Cancer Epidemiology Unit, University of Oxford, Richard Doll Building, Roosevelt Drive, Oxford OX3 7LF, UK
6 School of Biomedicine, 3rd floor, Core Technology Facility, 46 Grafton Street, Manchester M13 9NT, UK
Int. J. Mol. Sci. 2016, 17(7), 1089; https://doi.org/10.3390/ijms17071089 - 8 Jul 2016
Cited by 4 | Viewed by 6303
Abstract
Magnetic resonance spectroscopy (MRS) is a non-invasive method for quantitative estimation of liver fat. Knowledge of its imprecision, which comprises biological variability and measurement error, is required to design therapeutic trials with measurement of change. The role of adipocyte lipolysis in ectopic fat [...] Read more.
Magnetic resonance spectroscopy (MRS) is a non-invasive method for quantitative estimation of liver fat. Knowledge of its imprecision, which comprises biological variability and measurement error, is required to design therapeutic trials with measurement of change. The role of adipocyte lipolysis in ectopic fat accumulation remains unclear. We examined the relationship between liver fat content and indices of lipolysis, and determine whether lipolysis reflects insulin resistance or metabolic liver disease. Imprecision of measurement of liver fat was estimated from duplicate measurements by MRS at one month intervals. Patients provided fasting blood samples and we examined the correlation of liver fat with indices of insulin resistance, lipolysis and metabolic liver disease using Kendall Tau statistics. The coefficient of variation of liver fat content was 14.8%. Liver fat was positively related to serum insulin (T = 0.48, p = 0.042), homeostasis model assessment (HOMA)-B% (T = −0.48, p = 0.042), and body mass index (BMI) (T = 0.59, p = 0.012); and inversely related to HOMA-S% (T = −0.48, p = 0.042), serum glycerol (T = −0.59, p = 0.014), and serum caeruloplasmin (T = 0.055, p = 0.047). Our estimate of total variability in liver fat content (14.8%) is nearly twice that of the reported procedural variability (8.5%). We found that liver fat content was significantly inversely related to serum glycerol but not to non-esterified fatty acids (NEFA), suggesting progressive suppression of lipolysis. Reduction of caeruloplasmin with increasing liver fat may be a consequence or a cause of hepatic steatosis. Full article
(This article belongs to the Special Issue Non-Alcoholic Fatty Liver Disease Research 2016)
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12 pages, 1615 KiB  
Article
MALDI Mass Spectrometry Imaging Reveals Decreased CK5 Levels in Vulvar Squamous Cell Carcinomas Compared to the Precursor Lesion Differentiated Vulvar Intraepithelial Neoplasia
by Chao Zhang 1,2,†, Georgia Arentz 1,2,†, Lyron Winderbaum 1,†, Noor A. Lokman 1,3, Manuela Klingler-Hoffmann 1,2, Parul Mittal 1,2, Christopher Carter 4, Martin K. Oehler 3,5 and Peter Hoffmann 1,2,*
1 Adelaide Proteomics Centre, School of Biological Sciences, The University of Adelaide, Adelaide 5005, Australia
2 Institute for Photonics and Advanced Sensing (IPAS), The University of Adelaide, Adelaide 5005, Australia
3 Discipline of Obstetrics and Gynaecology, School of Medicine, Research Centre for Reproductive Health, Robinson Institute, Adelaide 5005, Australia
4 Department of Cytopathology, SA Pathology, Adelaide 5005, Australia
5 Department of Gynaecological Oncology, Royal Adelaide Hospital, Adelaide 5005, Australia
These authors contributed equally to this work.
Int. J. Mol. Sci. 2016, 17(7), 1088; https://doi.org/10.3390/ijms17071088 - 8 Jul 2016
Cited by 12 | Viewed by 6303
Abstract
Vulvar cancer is the fourth most common gynecological cancer worldwide. However, limited studies have been completed on the molecular characterization of vulvar squamous cell carcinoma resulting in a poor understanding of the disease initiation and progression. Analysis and early detection of the precursor [...] Read more.
Vulvar cancer is the fourth most common gynecological cancer worldwide. However, limited studies have been completed on the molecular characterization of vulvar squamous cell carcinoma resulting in a poor understanding of the disease initiation and progression. Analysis and early detection of the precursor lesion of HPV-independent vulvar squamous cell carcinoma (VSCC), differentiated vulvar intraepithelial neoplasia (dVIN), is of great importance given dVIN lesions have a high level of malignant potential. Here we present an examination of adjacent normal vulvar epithelium, dVIN, and VSCC from six patients by peptide Matrix-assisted laser desorption/ionization Mass Spectrometry Imaging (MALDI-MSI). The results reveal the differential expression of multiple peptides from the protein cytokeratin 5 (CK5) across the three vulvar tissue types. The difference observed in the relative abundance of CK5 by MALDI-MSI between the healthy epithelium, dVIN, and VSCC was further analyzed by immunohistochemistry (IHC) in tissue from eight VSCC patients. A decrease in CK5 immunostaining was observed in the VSCC compared to the healthy epithelium and dVIN. These results provide an insight into the molecular fingerprint of the vulvar intraepithelial neoplasia that appears to be more closely related to the healthy epithelium than the VSCC. Full article
(This article belongs to the Special Issue Cancer Molecular Imaging in the Era of Precision Medicine)
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23 pages, 3146 KiB  
Review
Chemical Structure-Biological Activity Models for Pharmacophores’ 3D-Interactions
by Mihai V. Putz 1,2,*,†, Corina Duda-Seiman 1,†, Daniel Duda-Seiman 3,†, Ana-Maria Putz 1,4,†, Iulia Alexandrescu 5,†, Maria Mernea 5 and Speranta Avram 5,†
1 Laboratory of Computational and Structural Physical-Chemistry for Nanosciences and QSAR, Department of Biology-Chemistry, West University of Timişoara, Pestalozzi Str. 16, RO-300115 Timisoara, Romania
2 Laboratory of Renewable Energies-Photovoltaics, R & D National Institute for Electrochemistry and Condensed Matter, Dr. A. Paunescu Podeanu Str. No. 144, RO-300569 Timisoara, Romania
3 Department of Medical Ambulatory, and Medical Emergencies, University of Medicine and Pharmacy “Victor Babes”, Avenue C. D. Loga No. 49, RO-300020 Timisoara, Romania
4 Institute of Chemistry Timișoara of the Romanian Academy, 24 Mihai Viteazul Bld., RO-300223 Timisoara, Romania
5 Department of Anatomy, Animal Physiology and Biophysics, Faculty of Biology, University of Bucharest, Str. 91-95th Independentei, RO-050095 Bucharest, Romania
These authors contributed equally to this work.
Int. J. Mol. Sci. 2016, 17(7), 1087; https://doi.org/10.3390/ijms17071087 - 8 Jul 2016
Cited by 34 | Viewed by 7252
Abstract
Within medicinal chemistry nowadays, the so-called pharmaco-dynamics seeks for qualitative (for understanding) and quantitative (for predicting) mechanisms/models by which given chemical structure or series of congeners actively act on biological sites either by focused interaction/therapy or by diffuse/hazardous influence. To this aim, the [...] Read more.
Within medicinal chemistry nowadays, the so-called pharmaco-dynamics seeks for qualitative (for understanding) and quantitative (for predicting) mechanisms/models by which given chemical structure or series of congeners actively act on biological sites either by focused interaction/therapy or by diffuse/hazardous influence. To this aim, the present review exposes three of the fertile directions in approaching the biological activity by chemical structural causes: the special computing trace of the algebraic structure-activity relationship (SPECTRAL-SAR) offering the full analytical counterpart for multi-variate computational regression, the minimal topological difference (MTD) as the revived precursor for comparative molecular field analyses (CoMFA) and comparative molecular similarity indices analysis (CoMSIA); all of these methods and algorithms were presented, discussed and exemplified on relevant chemical medicinal systems as proton pump inhibitors belonging to the 4-indolyl,2-guanidinothiazole class of derivatives blocking the acid secretion from parietal cells in the stomach, the 1-[(2-hydroxyethoxy)-methyl]-6-(phenylthio)thymine congeners’ (HEPT ligands) antiviral activity against Human Immunodeficiency Virus of first type (HIV-1) and new pharmacophores in treating severe genetic disorders (like depression and psychosis), respectively, all involving 3D pharmacophore interactions. Full article
(This article belongs to the Special Issue Computational Eco, Bio, and Pharmaco-Toxicity 2016)
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