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Authors = Zhen-Jun Du

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15 pages, 1201 KB  
Article
Preparation and Immunological Efficacy Evaluation of mRNA Vaccines Targeting the Spike Protein of Bovine Coronavirus
by Shuyue Liu, Zhen Gong, Ping Wang, Fu Chen, Xiulong Fu, Haoyu Fan, Yue Li, Xiangshu Han, Junli Chen, Lixue Zhang, Lijun Xue, Hangfei Bai, Shufan Liu, Lulu Huang, Wei Du, Ang Lin and Jun Xia
Vaccines 2025, 13(11), 1155; https://doi.org/10.3390/vaccines13111155 - 12 Nov 2025
Viewed by 385
Abstract
Objectives: Bovine coronaviruses (BCoV) are endemic worldwide, causing diarrhea, winter dysentery, and bovine respiratory disease in newborn calves. These lead to higher calf mortality, reduced growth of fattening cows, and lower milk production in adult cows, resulting in significant losses to the cattle [...] Read more.
Objectives: Bovine coronaviruses (BCoV) are endemic worldwide, causing diarrhea, winter dysentery, and bovine respiratory disease in newborn calves. These lead to higher calf mortality, reduced growth of fattening cows, and lower milk production in adult cows, resulting in significant losses to the cattle industry. Since commercial preventive drugs are not available in China, and existing treatments can only reduce the mortality of sick calves without fundamental control, the development of safe and effective vaccines is crucial. Methods: Two mRNA vaccines targeting the BCoV spiny receptor-binding domain (S-RBD) were prepared: XBS01 and XBS02. These two mRNAs, optimized for coding by AI and encapsulated in lipid nanoparticles (LNPs), were injected intramuscularly into mice (10 μg per mouse, twice, 2 weeks apart); a blank control group was not immunized. Serum antibodies, memory B/T cell activation and cytokine secretion were assessed by ELISA, flow cytometry and ELISpot. Results: Both vaccines induced humoral and cellular immunity:anti-S-RBD IgG titers were higher than those of the control group, and there was memory B-cell production and T-cell activation. XBS02 was superior to XBS01 in terms of peak antibody, memory B-cell frequency, T-cell activation rate, and IFN-γ/IL-2 secretion, and showed a stronger Th 1 response. Conclusions: Both BCoV S-RBD mRNA vaccines had good immunogenicity, with XBS02 providing better protection. This study supports the optimization and application of BCoV mRNA vaccines and accumulates data for mRNA technology in veterinary practice. Full article
(This article belongs to the Special Issue Vaccine and Vaccination in Veterinary Medicine)
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14 pages, 4357 KB  
Article
Thermal Gas Flow Sensor Using SiGe HBT Oscillators Based on GaN/Si SAW Resonators
by Wenpu Cui, Jie Cui, Wenchao Zhang, Guofang Yu, Di Zhao, Jingqing Du, Zhen Li, Jun Fu and Tianling Ren
Micromachines 2025, 16(10), 1151; https://doi.org/10.3390/mi16101151 - 10 Oct 2025
Viewed by 433
Abstract
This paper presents a thermal gas flow sensing system, from surface acoustic wave (SAW) temperature sensor to oscillation circuit and multi-module miniaturization integration. A single-port GaN/Si SAW resonator with single resonant mode and excellent characteristics was fabricated. Combined with an in-house-developed SiGe HBT, [...] Read more.
This paper presents a thermal gas flow sensing system, from surface acoustic wave (SAW) temperature sensor to oscillation circuit and multi-module miniaturization integration. A single-port GaN/Si SAW resonator with single resonant mode and excellent characteristics was fabricated. Combined with an in-house-developed SiGe HBT, a temperature-sensitive high-frequency oscillator was constructed. Under constant temperature control, system-level flow measurement was achieved through dual-oscillation configuration and modular integration. The fabricated SAW device shows a temperature coefficient of frequency (TCF) −28.29 ppm/K and temperature linearity 0.998. The oscillator operates at 1.91 GHz with phase noise of −97.72/−118.62 dBc/Hz at 10/100 kHz offsets. The system demonstrates excellent dynamic response and repeatability, directly measuring 0–50 sccm flows. For higher flows (>50 sccm), a shunt technique extends the test range based on the 0–10 sccm linear region, where response time is <1 s with error <0.9%. Non-contact operation ensures high stability and long lifespan. The sensor shows outstanding performance and broad application prospects in flow measurement. Full article
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14 pages, 2284 KB  
Article
Rhizobacteria’s Effects on the Growth and Competitiveness of Solidago canadensis Under Nutrient Limitation
by Zhi-Yun Huang, Ying Li, Hu-Anhe Xiong, Misbah Naz, Meng-Ting Yan, Rui-Ke Zhang, Jun-Zhen Liu, Xi-Tong Ren, Guang-Qian Ren, Zhi-Cong Dai and Dao-Lin Du
Agriculture 2025, 15(15), 1646; https://doi.org/10.3390/agriculture15151646 - 30 Jul 2025
Viewed by 777
Abstract
The role of rhizosphere bacteria in facilitating plant invasion is increasingly acknowledged, yet the influence of specific microbial functional traits remains insufficiently understood. This study addresses this gap by isolating two bacterial strains, Bacillus sp. ScRB44 and Pseudomonas sp. ScRB22, from the rhizosphere [...] Read more.
The role of rhizosphere bacteria in facilitating plant invasion is increasingly acknowledged, yet the influence of specific microbial functional traits remains insufficiently understood. This study addresses this gap by isolating two bacterial strains, Bacillus sp. ScRB44 and Pseudomonas sp. ScRB22, from the rhizosphere of the invasive weed Solidago canadensis. We assessed their nitrogen utilization capacity and indoleacetic acid (IAA) production capabilities to evaluate their ecological functions. Our three-stage experimental design encompassed strain promotion, nutrient stress, and competition phases. Bacillus sp. ScRB44 demonstrated robust IAA production and significantly improved the nitrogen utilization efficiency, significantly enhancing S. canadensis growth, especially under nutrient-poor conditions, and promoting a shift in biomass allocation toward the roots, thereby conferring a competitive advantage over native species. Conversely, Pseudomonas sp. ScRB22 exhibited limited functional activity and a negligible impact on plant performance. These findings underscore that the ecological impact of rhizosphere bacteria on invasive weeds is closely linked to their specific growth-promoting functions. By enhancing stress adaptation and optimizing resource allocation, certain microorganisms may facilitate the establishment of invasive weeds in adverse environments. This study highlights the significance of microbial functional traits in invasion ecology and suggests novel approaches for microbiome-based invasive weed management, with potential applications in agricultural soil health improvement and ecological restoration. Full article
(This article belongs to the Topic Microbe-Induced Abiotic Stress Alleviation in Plants)
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19 pages, 2167 KB  
Review
Grain Boundary Engineering for Reversible Zn Anodes in Rechargeable Aqueous Zn-Ion Batteries
by Yu-Xuan Liu, Jun-Zhe Wang, Lei Cao, Hao Wang, Zhen-Yu Cheng, Li-Feng Zhou and Tao Du
Metals 2025, 15(7), 784; https://doi.org/10.3390/met15070784 - 11 Jul 2025
Cited by 1 | Viewed by 963
Abstract
Rechargeable aqueous zinc-ion batteries (AZIBs) have garnered significant research attention in the energy storage field owing to their inherent safety, cost-effectiveness, and environmental sustainability. Nevertheless, critical challenges associated with zinc anodes—including dendrite formation, hydrogen evolution corrosion, and mechanical degradation—substantially impede their practical implementation. [...] Read more.
Rechargeable aqueous zinc-ion batteries (AZIBs) have garnered significant research attention in the energy storage field owing to their inherent safety, cost-effectiveness, and environmental sustainability. Nevertheless, critical challenges associated with zinc anodes—including dendrite formation, hydrogen evolution corrosion, and mechanical degradation—substantially impede their practical implementation. Grain boundary engineering (GBE) emerges as an innovative solution for zinc anode optimization through the precise regulation of grain boundary density, crystallographic orientation, and chemical states in metallic materials. This study comprehensively investigates the fundamental mechanisms and application prospects of GBE in zinc-based anodes, providing pivotal theoretical insights and technical methodologies for designing highly stable electrode architectures. The findings are expected to promote the development of aqueous zinc batteries toward a high energy density and long cycle life. Full article
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26 pages, 11679 KB  
Article
Evaluation of Salt-Tolerant Germplasms and Identification of Salt Tolerance-Related Proteins in Upland Cotton at the Seedling Stage
by Xiawen Li, Abdul Rehman, Zhenzhen Wang, Hongge Li, Jun Ma, Xiongming Du, Zhen Peng and Shoupu He
Int. J. Mol. Sci. 2025, 26(5), 1982; https://doi.org/10.3390/ijms26051982 - 25 Feb 2025
Cited by 1 | Viewed by 1403
Abstract
Currently, developing cotton cultivation in saline–alkali soils is a vital focus for restructuring the cotton industry in China. The seedling stage, specifically the three-leaf stage, is a crucial period for assessing the salt tolerance of cotton. This research examined 430 natural populations of [...] Read more.
Currently, developing cotton cultivation in saline–alkali soils is a vital focus for restructuring the cotton industry in China. The seedling stage, specifically the three-leaf stage, is a crucial period for assessing the salt tolerance of cotton. This research examined 430 natural populations of upland cotton, including 45 semi-wild germlines of Gossypium purpurascens. We measured the phenotypic responses of salt stress injury on seedlings as well as potassium (K), calcium (Ca), sodium (Na), and magnesium (Mg) concentrations in the roots, stems, and leaves following a 72 h exposure. The comprehensive salt tolerance index (CSTI) was determined using a membership function, principal component analysis, and cluster analysis based on 48 phenotypic traits related to salt tolerance. The results revealed significant variations in the phenotypic traits of the ion group under salt stress. Salt stress greatly affected the relative contents of Mg, K, and Ca ions in the aboveground parts of cotton, and correlations were observed among the 48 indices. The CSTI was calculated using seven principal component indexes, identifying 30 salt-tolerant, 114 weakly salt-tolerant, 39 salt-sensitive, and 4 highly sensitive materials based on cluster analysis. Among the 45 G. purpurascens cotton resources, 28 were weakly salt-tolerant, while 17 were salt-sensitive. Through TMT (Tandem Mass Tag)-based quantitative analysis, we identified 3107 unique peptides among 28,642 detected peptides, resulting in 203,869 secondary mass spectra, with 50,039 spectra successfully matched to peptides. Additionally, we identified several salt tolerance-related pathways (carbon metabolism; glutathione metabolism; the biosynthesis of amino acids, etc.) and proteins classified within the CAZy (Carbohydrate-Active EnZYme) family and expansin proteins. The results of this study concerning salt-tolerant materials provide a crucial theoretical foundation for the identification and evaluation of salt-tolerant breeding parents in cultivated cotton. Full article
(This article belongs to the Special Issue New Insights into Environmental Stresses and Plants)
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18 pages, 19695 KB  
Article
Identification of the Microbial Transformation Products of Secoisolariciresinol Using an Untargeted Metabolomics Approach and Evaluation of the Osteogenic Activities of the Metabolites
by Wen-Xuan Yu, Hok-Him Tang, Jun-Jie Ye, Hui-Hui Xiao, Chung-Yan Lam, Tim-Fat Shum, Zhi-Kang Sun, Yuan-Zhen Li, Xin-Yu Zang, Wen-Chao Du, Jian-Ping Zhang, Tsz-Hung Kong, Li-Ping Zhou, Jia-Chi Chiou, Chun-Fai Kung, Kam-Wah Mok, Jing Hu and Man-Sau Wong
Molecules 2023, 28(15), 5742; https://doi.org/10.3390/molecules28155742 - 29 Jul 2023
Cited by 3 | Viewed by 2468
Abstract
Secoisolariciresinol (SECO) is one of the major lignans occurring in various grains, seeds, fruits, and vegetables. The gut microbiota plays an important role in the biotransformation of dietary lignans into enterolignans, which might exhibit more potent bioactivities than the precursor lignans. This study [...] Read more.
Secoisolariciresinol (SECO) is one of the major lignans occurring in various grains, seeds, fruits, and vegetables. The gut microbiota plays an important role in the biotransformation of dietary lignans into enterolignans, which might exhibit more potent bioactivities than the precursor lignans. This study aimed to identify, synthesize, and evaluate the microbial metabolites of SECO and to develop efficient lead compounds from the metabolites for the treatment of osteoporosis. SECO was fermented with human gut microbiota in anaerobic or micro-aerobic environments at different time points. Samples derived from microbial transformation were analyzed using an untargeted metabolomics approach for metabolite identification. Nine metabolites were identified and synthesized. Their effects on cell viability, osteoblastic differentiation, and gene expression were examined. The results showed that five of the microbial metabolites exerted potential osteogenic effects similar to those of SECO or better. The results suggested that the enterolignans might account for the osteoporotic effects of SECO in vivo. Thus, the presence of the gut microbiota could offer a good way to form diverse enterolignans with bone-protective effects. The current study improves our understanding of the microbial transformation products of SECO and provides new approaches for new candidate identification in the treatment of osteoporosis. Full article
(This article belongs to the Special Issue Metabolites of Biofunctional Interest from Plant Sources)
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19 pages, 2151 KB  
Article
Early Pregnancy Maternal Plasma Phospholipid Saturated Fatty Acids and Fetal Growth: Findings from a Multi-Racial/Ethnic Birth Cohort in US
by Ling-Jun Li, Ruochen Du, Marion Ouidir, Ruijin Lu, Zhen Chen, Natalie L. Weir, Michael Y. Tsai, Paul S. Albert and Cuilin Zhang
Nutrients 2023, 15(15), 3287; https://doi.org/10.3390/nu15153287 - 25 Jul 2023
Cited by 6 | Viewed by 2596
Abstract
Saturated fatty acids (SFAs) during pregnancy are associated with disrupted metabolic programming among offspring at birth and later growth. We examined plasma phospholipid SFAs in early pregnancy and fetal growth throughout pregnancy. We enrolled 321 pregnant women from the NICHD Fetal Growth Studies—Singleton [...] Read more.
Saturated fatty acids (SFAs) during pregnancy are associated with disrupted metabolic programming among offspring at birth and later growth. We examined plasma phospholipid SFAs in early pregnancy and fetal growth throughout pregnancy. We enrolled 321 pregnant women from the NICHD Fetal Growth Studies—Singleton Cohort at gestational weeks 8–13. Ultrasonogram schedules were randomly assigned to capture weekly fetal growth. We measured plasma phospholipid SFAs at early pregnancy using blood samples and modeled fetal growth trajectories across tertiles of SFAs with cubic splines using linear mixed models after full adjustment. We then compared pairwise weekly fetal growth biometrics referencing the lowest tertile in each SFA using the Wald test. We found that even-chain and very long even-chain SFAs were inversely associated, whereas odd-chain SFAs were positively associated with fetal weight and size. Compared with the lowest tertile, the highest tertile of pentadecanoic acid (15:0) had a greater fetal weight and size, starting from week 13 until late pregnancy (at week 39: 3429.89 vs. 3269.08 g for estimated fetal weight; 328.14 vs. 323.00 mm for head circumference). Our findings could inspire future interventions using an alternative high-fat diet rich in odd-chain SFAs for optimal fetal growth. Full article
(This article belongs to the Section Nutritional Epidemiology)
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21 pages, 11616 KB  
Article
Integrated Omic Analysis of Human Plasma Metabolites and Microbiota in a Hypertension Cohort
by Bo-Yan Chen, Yu-Lin Li, Wen-Zhen Lin, Chao Bi, Lin-Juan Du, Yuan Liu, Lu-Jun Zhou, Ting Liu, Shuo Xu, Jun Zhang, Yan Liu, Hong Zhu, Wu-Chang Zhang, Zhi-Yuan Zhang and Sheng-Zhong Duan
Nutrients 2023, 15(9), 2074; https://doi.org/10.3390/nu15092074 - 25 Apr 2023
Cited by 6 | Viewed by 3338
Abstract
Hypertension is closely related to metabolic dysregulation, which is associated with microbial dysbiosis and altered host–microbiota interactions. However, plasma metabolite profiles and their relationships to oral/gut microbiota in hypertension have not been evaluated in depth. Plasma, saliva, subgingival plaques, and feces were collected [...] Read more.
Hypertension is closely related to metabolic dysregulation, which is associated with microbial dysbiosis and altered host–microbiota interactions. However, plasma metabolite profiles and their relationships to oral/gut microbiota in hypertension have not been evaluated in depth. Plasma, saliva, subgingival plaques, and feces were collected from 52 hypertensive participants and 24 healthy controls in a cross-sectional cohort. Untargeted metabolomic profiling of plasma was performed using high-performance liquid chromatography–mass spectrometry. Microbial profiling of oral and gut samples was determined via 16S rRNA and metagenomic sequencing. Correlations between metabolites and clinic parameters/microbiota were identified using Spearman’s correlation analysis. Metabolomic evaluation showed distinct clusters of metabolites in plasma between hypertensive participants and control participants. Hypertensive participants had six significantly increased and thirty-seven significantly decreased plasma metabolites compared to controls. The plasma metabolic similarity significantly correlated with the community similarity of microbiota. Both oral and gut microbial community composition had significant correlations with metabolites such as Sphingosine 1-phosphate, a molecule involved in the regulation of blood pressure. Plasma metabolites had a larger number of significant correlations with bacterial genera than fungal genera. The shared oral/gut bacterial genera had more correlations with metabolites than unique genera but shared fungal genera and metabolites did not show clear clusters. The hypertension group had fewer correlations between plasma metabolites and bacteria/fungi than controls at species level. The integrative analysis of plasma metabolome and oral/gut microbiome identified unreported alterations of plasma metabolites in hypertension and revealed correlations between altered metabolites and oral/gut microbiota. These observations suggested metabolites and microbiota may become valuable targets for therapeutic and preventive interventions of hypertension. Full article
(This article belongs to the Special Issue Effects of Gut Microbiota on Hypertension and Cardiovascular System)
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14 pages, 2384 KB  
Article
Culturing the Chicken Intestinal Microbiota and Potential Application as Probiotics Development
by Ke Ma, Wei Chen, Xiao-Qi Lin, Zhen-Zhen Liu, Tao Wang, Jia-Bao Zhang, Jian-Gang Zhang, Cheng-Kai Zhou, Yu Gao, Chong-Tao Du and Yong-Jun Yang
Int. J. Mol. Sci. 2023, 24(3), 3045; https://doi.org/10.3390/ijms24033045 - 3 Feb 2023
Cited by 13 | Viewed by 4601
Abstract
Pure cultures of chicken intestinal microbial species may still be crucial and imperative to expound on the function of gut microbiota, and also contribute to the development of potential probiotics and novel bioactive metabolites from gut microbiota. In this study, we isolated and [...] Read more.
Pure cultures of chicken intestinal microbial species may still be crucial and imperative to expound on the function of gut microbiota, and also contribute to the development of potential probiotics and novel bioactive metabolites from gut microbiota. In this study, we isolated and identified 507 chicken intestinal bacterial isolates, including 89 previously uncultured isolates. Among these, a total of 63 Lactobacillus strains, belonging to L. vaginalis, L. crispatus, L. gallinarum, L. reuteri, L. salivarius, and L. saerimneri, exhibited antibacterial activity against S. Pullorum. Acid tolerance tests showed Limosilactobacillus reuteri strain YPG14 (L. reuteri strain YPG14) has a particularly strong tolerance to acid. We further characterized other probiotic properties of L. reuteri strain YPG14. In simulated intestinal fluid, the growth of L. reuteri strain YPG14 remained stable after incubation for 4 h. The auto-aggregation test showed the auto-aggregation percentage of L. reuteri strain YPG14 was recorded as 15.0  ±  0.38%, 48.3  ±  2.51%, and 75.1  ±  4.44% at 3, 12, and 24 h, respectively. In addition, the mucin binding assay showed L. reuteri strain YPG14 exhibited 12.07 ±  0.02% adhesion to mucin. Antibiotic sensitivity testing showed that L. reuteri strain YPG14 was sensitive to the majority of the tested antibiotics. The anti-Salmonella Pullorum (S. Pullorum) infection effect in vivo revealed that the consumption of L. reuteri strain YPG14 could significantly improve body weight loss and survival rate of chicks infected by S. Pullorum; reduce the loads of S. Pullorum in the jejunum, liver, spleen, and feces; and alleviate the jejunum villi morphological structure damage, crypt loss, and inflammatory cell infiltration caused by S. Pullorum. Overall, this study may help us to understand the diversity of chicken intestinal microflora and provide some insights for potential probiotic development from gut microbiota and may find application in the poultry industry. Full article
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12 pages, 2238 KB  
Article
Diversity and Structure of Vegetation Rhizosphere Bacterial Community in Various Habitats of Liaohekou Coastal Wetlands
by Yinchu Liu, Zhen Guo, Peidong Zhang, Jun Du, Ping Gao and Zhiwei Zhang
Sustainability 2022, 14(24), 16396; https://doi.org/10.3390/su142416396 - 7 Dec 2022
Cited by 14 | Viewed by 2652
Abstract
Coastal wetlands are a type of unique ecosystem, in which rhizosphere microorganisms of vegetation play a significant role in the overall ecology. Rhizosphere soil samples from the vegetation of Liaohekou Coastal Wetlands, Northeast China (40°54′44″ N, 121°47′51″ E), were collected in seven habitats [...] Read more.
Coastal wetlands are a type of unique ecosystem, in which rhizosphere microorganisms of vegetation play a significant role in the overall ecology. Rhizosphere soil samples from the vegetation of Liaohekou Coastal Wetlands, Northeast China (40°54′44″ N, 121°47′51″ E), were collected in seven habitats (Suaeda and Phragmites community in different coverage, aquaculture ponds and farmland biotopes) to evaluate the diversity and structure of bacterial community using high throughput sequencing. Soil physicochemical characteristics and bacterial communities were found to be affected by vegetation coverage by ANOVA tests. As and Ni were the main heavy metal variables affecting the bacterial communities as demonstrated by RDA tests, while NO3-N were important variables in nutrient factors. Proteobacteria was the predominant phylum in all soils. Gillisia and Woeseia were the two most dominant genera peculiarly in Suaeda and Phragmites community. Meanwhile SparCC showed that Woeseia play a dominant role in wetland rhizosphere bacterial communities. The Chemoheterotrophic function was dominant in all communities with FAPROTAX results, while in wetland the cycle of Sulfur and Nitrogen were significantly affected by vegetation type and coverage. In conclusion, this study revealed the structural composition and diversity of rhizosphere bacterial communities under different vegetation types and coverage. This research could help deepen our understanding of the microbial ecology on the wetlands and provide information on bacterial communities in various habitats. Full article
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10 pages, 1328 KB  
Article
Genetic Diversity of Chinese Longsnout Catfish (Leiocassis longirostris) in Four Farmed Populations Based on 20 New Microsatellite DNA Markers
by Lu Zhang, Chenyan Mou, Jian Zhou, Hua Ye, Zhen Wei, Hongyu Ke, Zhipeng Huang, Yuanliang Duan, Zhongmeng Zhao, Han Zhao, Huadong Li, Jun Du and Qiang Li
Diversity 2022, 14(8), 654; https://doi.org/10.3390/d14080654 - 13 Aug 2022
Cited by 4 | Viewed by 3015
Abstract
Freshwater aquaculture has a long and vibrant tradition in China. The Chinese longsnout catfish (Leiocassis longirostris) is a popular economic freshwater fish native to China. Understanding the genetic structure of L. longirostris populations is important for ensuring the efficacy of management [...] Read more.
Freshwater aquaculture has a long and vibrant tradition in China. The Chinese longsnout catfish (Leiocassis longirostris) is a popular economic freshwater fish native to China. Understanding the genetic structure of L. longirostris populations is important for ensuring the efficacy of management practices and the sustainability of future increases in production. In this study, we used Illumina sequencing technology to isolate 20 novel polymorphic microsatellites from the genome of L. longirostris. These microsatellites were used to analyze the genetic diversity of 240 L. longrostris individuals from four populations. Genetic diversity parameters (NA, HO, HE, I, PIC, and FST) of the four farmed L. longirostris populations were analyzed. The level of genetic differentiation among the four farmed L. longirostris populations (inferred by pairwise comparisons of FST values) was low, but the genetic diversity of these populations was high, indicating that they still provide useful sources of genetic variation that could aid in breeding efforts. The STRUCTURE and ADMIXTURE analyses indicated that admixture might be occurring in the four L. longirostris populations, especially between the MS and YB populations. Understanding the genetic diversity of farmed L. longirostris populations and inbreeding prevention could greatly aid in breeding and production. These newly isolated microsatellite markers and the high genetic diversity of L. longirostris populations in the main breeding areas have important implications for the breeding and stock management of L. longirostris. Full article
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15 pages, 2849 KB  
Article
Morphological and Physiological Characteristics of Rice Cultivars with Higher Yield and Nitrogen Use Efficiency at Various Nitrogen Rates
by Wei Xin, Lina Zhang, Wenzhong Zhang, Jiping Gao, Jun Yi, Xiaoxi Zhen, Ming Du, Yanze Zhao and Liqiang Chen
Agronomy 2022, 12(2), 358; https://doi.org/10.3390/agronomy12020358 - 31 Jan 2022
Cited by 5 | Viewed by 5796
Abstract
An understanding of the leaf and root traits associated with high nitrogen (N) absorption and utilization is very important in the development of N-efficient varieties in crop breeding programs. However, in rice, the relations between these traits and nitrogen use efficiencies (NUEs) have [...] Read more.
An understanding of the leaf and root traits associated with high nitrogen (N) absorption and utilization is very important in the development of N-efficient varieties in crop breeding programs. However, in rice, the relations between these traits and nitrogen use efficiencies (NUEs) have yet to be identified. Therefore, the responses of leaf and root traits and yields of the three main japonica rice cultivars in northern China were examined at a range of N application rates. The rice cultivars, Shennong 265 (SN265), Tiejing 11 (TJ11), and Fengjing (FJ), were grown in the field at six N rates (0, 60, 120, 180, 240, and 300 kg ha−1) applied during two growing seasons (2018 and 2019). With the increase in N rate, the grain yield of SN265 and TJ11 increased, whereas the grain yield of FJ first increased and then decreased. The grain yield of FJ was higher than that of SN265 and TJ11 at lower N rates, whereas the grain yields of SN265 and TJ11 were higher than that of FJ at higher N rates. The NUEs decreased with the increase in N rates. At lower N rates, the ability of rice to obtain N was the main limitation on rice yield, but with the increase in N rates, the limitation on yield due to N absorption capacity gradually weakened. However, at higher N rates, rice yields were restricted by the ability to utilize N. Compared with TJ11 or FJ, SN265 had higher N utilization capacity primarily because of its higher Rubisco activity, NR activity, GS activity, and ROA. Compared with SN265 or TJ11, FJ had a higher N absorption capacity that was attributed to its larger root architecture, which might have also been one of the reasons for lower N utilization. Therefore, by improving N absorption and utilization-related leaf and root traits, high yields and NUEs can be achieved in rice production at different N application rates. Full article
(This article belongs to the Special Issue Advances in Rice Physioecology and Sustainable Cultivation)
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14 pages, 23589 KB  
Article
Ethylenediamine and Pentaethylene Hexamine Modified Bamboo Sawdust by Radiation Grafting and Their Adsorption Behavior for Phosphate
by Jifu Du, Houhua Xiong, Zhen Dong, Xin Yang, Long Zhao and Jun Yang
Appl. Sci. 2021, 11(17), 7854; https://doi.org/10.3390/app11177854 - 26 Aug 2021
Cited by 5 | Viewed by 2950
Abstract
Phosphate is an important component for the growth of plants and microorganisms; however, excess phosphate causes serious eutrophication in natural waters. New potential low-loss adsorbents from natural biomass for phosphate removal are desired. Bamboo is one of the most abundant renewable cellulose resources; [...] Read more.
Phosphate is an important component for the growth of plants and microorganisms; however, excess phosphate causes serious eutrophication in natural waters. New potential low-loss adsorbents from natural biomass for phosphate removal are desired. Bamboo is one of the most abundant renewable cellulose resources; however, the pure bamboo cellulose is poor to adsorb phosphate. To enhance the adsorption capacity, in this work, bamboo sawdust (BS) was chemically modified by two kinds of amines. First, glycidyl methacrylate (GMA) was grafted on BS using radiation induced graft polymerization. Then, the GMA-grafted BS was further modified by a ring-opening reaction with amines, including ethylenediamine (EDA) and pentaethylene hexamine (PEHA). The amine groups were then quaternized to prepare the BS-GMA-EDA-Q and BS-GMA-PEHA-Q adsorbents. The adsorbents were characterized by FTIR, SEM, TG, and XPS analysis. The adsorption performances of the adsorbents for phosphate were evaluated through batch experiments. The adsorption by BS-GMA-EDA-Q and BS-GMA-PEHA-Q both well obeyed the pseudo-second-order kinetic model and the Langmuir isotherm model, indicating that the adsorption process was chemical monomolecular layer adsorption. The maximum adsorption capacities for BS-GMA-EDA-Q and BS-GMA-PEHA-Q calculated by the Langmuir model were 85.25 and 152.21 mg/g, respectively. A total of 1 mol/L HCl was used to elute the saturated adsorbents. A negligible decrease in adsorption capacity was found after five adsorption–desorption cycles. Full article
(This article belongs to the Special Issue Applied Radiation Chemistry: Theory, Methods and Applications)
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15 pages, 3342 KB  
Article
An Integrated Analysis of the Rice Transcriptome and Metabolome Reveals Root Growth Regulation Mechanisms in Response to Nitrogen Availability
by Wei Xin, Lina Zhang, Wenzhong Zhang, Jiping Gao, Jun Yi, Xiaoxi Zhen, Ming Du, Yanze Zhao and Liqiang Chen
Int. J. Mol. Sci. 2019, 20(23), 5893; https://doi.org/10.3390/ijms20235893 - 24 Nov 2019
Cited by 63 | Viewed by 6538
Abstract
Nitrogen is an essential nutrient for plant growth and basic metabolic processes. Root systems play an important role in the ability of plants to obtain nutrients from the soil, and are closely related to the growth and development of above-ground plants. Root morphology [...] Read more.
Nitrogen is an essential nutrient for plant growth and basic metabolic processes. Root systems play an important role in the ability of plants to obtain nutrients from the soil, and are closely related to the growth and development of above-ground plants. Root morphology analysis showed that root growth was induced under low-nitrogen conditions and inhibited under high-nitrogen conditions. To better understand the molecular mechanisms and metabolic basis underlying the rice root response to nitrogen availability, an integrated analysis of the rice root transcriptome and metabolome under three environmental conditions (low-, control, and high-nitrogen conditions) was conducted. A total of 262 and 262 differentially level metabolites were identified under low- and high-nitrogen conditions, respectively. A total of 696 and 808 differentially expressed genes were identified under low- and high-nitrogen conditions, respectively. For both the differentially expressed genes and metabolites, KEGG pathway analysis indicated that amino acid metabolism, carbon and nitrogen metabolism, phenylpropanoid metabolism, and phytohormones’ signal transduction were significantly affected by nitrogen availability. Additionally, variable levels of 65 transcription factors (TFs) were identified in rice leaves exposed to high and low nitrogen, covering 22 TF families. These results also indicate that there is a significant difference in the transcriptional regulation mechanisms of rice roots between low and high nitrogen. In summary, our study provides new information for a further understanding of the response of rice roots to low-nitrogen and high-nitrogen conditions. Full article
(This article belongs to the Section Molecular Plant Sciences)
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14 pages, 22989 KB  
Article
MicroRNA-146a Deficiency Protects against Listeria monocytogenes Infection by Modulating the Gut Microbiota
by Chong-Tao Du, Wei Gao, Ke Ma, Shui-Xing Yu, Na Li, Shi-Qing Yan, Feng-Hua Zhou, Zhen-Zhen Liu, Wei Chen, Lian-Cheng Lei, Yong-Jun Yang and Wen-Yu Han
Int. J. Mol. Sci. 2018, 19(4), 993; https://doi.org/10.3390/ijms19040993 - 26 Mar 2018
Cited by 36 | Viewed by 6520
Abstract
The gut microbiota and microRNAs play important roles in the defense against infection. However, the role of miR-146a in L. monocytogenes infection and gut microbiota remains unclear. We tried to determine whether miR-146a controlled L. monocytogenes infection by regulating the gut microbiota. Wild-type [...] Read more.
The gut microbiota and microRNAs play important roles in the defense against infection. However, the role of miR-146a in L. monocytogenes infection and gut microbiota remains unclear. We tried to determine whether miR-146a controlled L. monocytogenes infection by regulating the gut microbiota. Wild-type and miR-146a-deficient mice or macrophages were used to characterize the impact of miR-146a on animal survival, cell death, bacterial clearance, and gut microbiota following L. monocytogenes challenge. We found that L. monocytogenes infection induced miR-146a expression both in vitro and in vivo. When compared to wild-type mice, miR-146a-deficient mice were more resistant to L. monocytogenes infection. MiR-146a deficiency in macrophages resulted in reduced invasion and intracellular survival of L. monocytogenes. High-throughput sequencing of 16S rRNA revealed that the gut microbiota composition differed between miR-146a-deficient and wild-type mice. Relative to wild-type mice, miR-146a-deficient mice had decreased levels of the Proteobacteria phylum, Prevotellaceae family, and Parasutterella genus, and significantly increased short-chain fatty acid producing bacteria, including the genera Alistipes, Blautia, Coprococcus_1, and Ruminococcus_1. Wild-type mice co-housed with miR-146a-deficient mice had increased resistance to L. monocytogenes, indicating that miR-146a deficiency guides the gut microbiota to alleviate infection. Together, these results suggest that miR-146a deficiency protects against L. monocytogenes infection by regulating the gut microbiota. Full article
(This article belongs to the Special Issue Host-Microbe Interaction 2018)
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