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Authors = Päivi Lyytikäinen-Saarenmaa

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25 pages, 3183 KB  
Article
Comparison of Deep Neural Networks in the Classification of Bark Beetle-Induced Spruce Damage Using UAS Images
by Emma Turkulainen, Eija Honkavaara, Roope Näsi, Raquel A. Oliveira, Teemu Hakala, Samuli Junttila, Kirsi Karila, Niko Koivumäki, Mikko Pelto-Arvo, Johanna Tuviala, Madeleine Östersund, Ilkka Pölönen and Päivi Lyytikäinen-Saarenmaa
Remote Sens. 2023, 15(20), 4928; https://doi.org/10.3390/rs15204928 - 12 Oct 2023
Cited by 21 | Viewed by 3831
Abstract
The widespread tree mortality caused by the European spruce bark beetle (Ips typographus L.) is a significant concern for Norway spruce-dominated (Picea abies H. Karst) forests in Europe and there is evidence of increases in the affected areas due to climate [...] Read more.
The widespread tree mortality caused by the European spruce bark beetle (Ips typographus L.) is a significant concern for Norway spruce-dominated (Picea abies H. Karst) forests in Europe and there is evidence of increases in the affected areas due to climate warming. Effective forest monitoring methods are urgently needed for providing timely data on tree health status for conducting forest management operations that aim to prepare and mitigate the damage caused by the beetle. Unoccupied aircraft systems (UASs) in combination with machine learning image analysis have emerged as a powerful tool for the fast-response monitoring of forest health. This research aims to assess the effectiveness of deep neural networks (DNNs) in identifying bark beetle infestations at the individual tree level from UAS images. The study compares the efficacy of RGB, multispectral (MS), and hyperspectral (HS) imaging, and evaluates various neural network structures for each image type. The findings reveal that MS and HS images perform better than RGB images. A 2D-3D-CNN model trained on HS images proves to be the best for detecting infested trees, with an F1-score of 0.759, while for dead and healthy trees, the F1-scores are 0.880 and 0.928, respectively. The study also demonstrates that the tested classifier networks outperform the state-of-the-art You Only Look Once (YOLO) classifier module, and that an effective analyzer can be implemented by integrating YOLO and the DNN classifier model. The current research provides a foundation for the further exploration of MS and HS imaging in detecting bark beetle disturbances in time, which can play a crucial role in forest management efforts to combat large-scale outbreaks. The study highlights the potential of remote sensing and machine learning in monitoring forest health and mitigating the impacts of biotic stresses. It also offers valuable insights into the effectiveness of DNNs in detecting bark beetle infestations using UAS-based remote sensing technology. Full article
(This article belongs to the Section Forest Remote Sensing)
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37 pages, 24105 KB  
Article
Estimating Tree Health Decline Caused by Ips typographus L. from UAS RGB Images Using a Deep One-Stage Object Detection Neural Network
by Heini Kanerva, Eija Honkavaara, Roope Näsi, Teemu Hakala, Samuli Junttila, Kirsi Karila, Niko Koivumäki, Raquel Alves Oliveira, Mikko Pelto-Arvo, Ilkka Pölönen, Johanna Tuviala, Madeleine Östersund and Päivi Lyytikäinen-Saarenmaa
Remote Sens. 2022, 14(24), 6257; https://doi.org/10.3390/rs14246257 - 10 Dec 2022
Cited by 14 | Viewed by 3958
Abstract
Various biotic and abiotic stresses are causing decline in forest health globally. Presently, one of the major biotic stress agents in Europe is the European spruce bark beetle (Ips typographus L.) which is increasingly causing widespread tree mortality in northern latitudes as [...] Read more.
Various biotic and abiotic stresses are causing decline in forest health globally. Presently, one of the major biotic stress agents in Europe is the European spruce bark beetle (Ips typographus L.) which is increasingly causing widespread tree mortality in northern latitudes as a consequence of the warming climate. Remote sensing using unoccupied aerial systems (UAS) together with evolving machine learning techniques provide a powerful tool for fast-response monitoring of forest health. The aim of this study was to investigate the performance of a deep one-stage object detection neural network in the detection of damage by I. typographus in Norway spruce trees using UAS RGB images. A Scaled-YOLOv4 (You Only Look Once) network was implemented and trained for tree health analysis. Datasets for model training were collected during 2013–2020 from three different areas, using four different RGB cameras, and under varying weather conditions. Different model training options were evaluated, including two different symptom rules, different partitions of the dataset, fine-tuning, and hyperparameter optimization. Our study showed that the network was able to detect and classify spruce trees that had visually separable crown symptoms, but it failed to separate spruce trees with stem symptoms and a green crown from healthy spruce trees. For the best model, the overall F-score was 89%, and the F-scores for the healthy, infested, and dead trees were 90%, 79%, and 98%, respectively. The method adapted well to the diverse dataset, and the processing results with different options were consistent. The results indicated that the proposed method could enable implementation of low-cost tools for management of I. typographus outbreaks. Full article
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12 pages, 1231 KB  
Article
Defoliation-Induced Growth Reduction of Pinus sylvestris L. after a Prolonged Outbreak of Diprion pini L.—A Case Study from Eastern Finland
by Minna Blomqvist, Päivi Lyytikäinen-Saarenmaa, Maiju Kosunen, Tuula Kantola and Markus Holopainen
Forests 2022, 13(6), 839; https://doi.org/10.3390/f13060839 - 27 May 2022
Cited by 6 | Viewed by 3031
Abstract
The frequency and intensity of insect outbreaks have increased in boreal forests, along with associated impacts on the growth and economic losses of host trees. In Finland, the common pine sawfly (Diprion pini L.) is a serious pest, causing declines in health [...] Read more.
The frequency and intensity of insect outbreaks have increased in boreal forests, along with associated impacts on the growth and economic losses of host trees. In Finland, the common pine sawfly (Diprion pini L.) is a serious pest, causing declines in health and growth responses of Scots pine (Pinus sylvestris L.). We focused on investigating the species’ defoliating impact on tree radial and volume growth and estimated the economic value of the declined growth. Managed P. sylvestris forests in our study area in eastern Finland have suffered from extended defoliation by D. pini for 15 years since 1999 at varying intensity levels. We classified 184 trees into four defoliation classes and compared annual growth, expressed as growth indices between the classes. We modelled tree volume, estimated economic loss, and compared those to a reference period preceding the initial outbreak. We found significant differences in growth indices between the defoliation classes. Growth losses of 4.2%, 20.8%, and 40.4% were obtained for the mild, moderate, and high defoliation classes, with related economic impacts of 51 €, 272 €, and 734 € per ha for 11 years, respectively. Growth was slightly enhanced in the lowest defoliation class. We suggest that growth-related economic loss caused by D. pini may be significant and depend on defoliation intensity and outbreak duration. Full article
(This article belongs to the Section Forest Ecology and Management)
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26 pages, 12446 KB  
Article
Multispectral Imagery Provides Benefits for Mapping Spruce Tree Decline Due to Bark Beetle Infestation When Acquired Late in the Season
by Samuli Junttila, Roope Näsi, Niko Koivumäki, Mohammad Imangholiloo, Ninni Saarinen, Juha Raisio, Markus Holopainen, Hannu Hyyppä, Juha Hyyppä, Päivi Lyytikäinen-Saarenmaa, Mikko Vastaranta and Eija Honkavaara
Remote Sens. 2022, 14(4), 909; https://doi.org/10.3390/rs14040909 - 14 Feb 2022
Cited by 37 | Viewed by 5814
Abstract
Climate change is increasing pest insects’ ability to reproduce as temperatures rise, resulting in vast tree mortality globally. Early information on pest infestation is urgently needed for timely decisions to mitigate the damage. We investigated the mapping of trees that were in decline [...] Read more.
Climate change is increasing pest insects’ ability to reproduce as temperatures rise, resulting in vast tree mortality globally. Early information on pest infestation is urgently needed for timely decisions to mitigate the damage. We investigated the mapping of trees that were in decline due to European spruce bark beetle infestation using multispectral unmanned aerial vehicles (UAV)-based imagery collected in spring and fall in four study areas in Helsinki, Finland. We used the Random Forest machine learning to classify trees based on their symptoms during both occasions. Our approach achieved an overall classification accuracy of 78.2% and 84.5% for healthy, declined and dead trees for spring and fall datasets, respectively. The results suggest that fall or the end of summer provides the most accurate tree vitality classification results. We also investigated the transferability of Random Forest classifiers between different areas, resulting in overall classification accuracies ranging from 59.3% to 84.7%. The findings of this study indicate that multispectral UAV-based imagery is capable of classifying tree decline in Norway spruce trees during a bark beetle infestation. Full article
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16 pages, 2313 KB  
Article
Response of Soil Surface Respiration to Storm and Ips typographus (L.) Disturbance in Boreal Norway Spruce Stands
by Maiju Kosunen, Päivi Lyytikäinen-Saarenmaa, Paavo Ojanen, Minna Blomqvist and Mike Starr
Forests 2019, 10(4), 307; https://doi.org/10.3390/f10040307 - 3 Apr 2019
Cited by 13 | Viewed by 3833
Abstract
Disturbances such as storm events and bark beetle outbreaks can have a major influence on forest soil carbon (C) cycling. Both autotrophic and heterotrophic soil respiration may be affected by the increase in tree mortality. We studied the effect of a storm in [...] Read more.
Disturbances such as storm events and bark beetle outbreaks can have a major influence on forest soil carbon (C) cycling. Both autotrophic and heterotrophic soil respiration may be affected by the increase in tree mortality. We studied the effect of a storm in 2010 followed by an outbreak of the European spruce bark beetle (Ips typographus L.) on the soil surface respiration (respiration by soil and ground vegetation) at two Norway spruce (Picea abies L.) dominated sites in southeastern Finland. Soil surface respiration, soil temperature, and soil moisture were measured in three types of plots—living trees (undisturbed), storm-felled trees, and standing dead trees killed by I. typographus—during the summer–autumn period for three years (2015–2017). Measurements at storm-felled tree plots were separated into dead tree detritus-covered (under storm-felled trees) and open-vegetated (on open areas) microsites. The soil surface total respiration for 2017 was separated into its autotrophic and heterotrophic components using trenching. The soil surface total respiration rates at the disturbed plots were 64%–82% of those at the living tree plots at one site and were due to a decrease in autotrophic respiration, but there was no clear difference in soil surface total respiration between the plots at the other site, due to shifts in either autotrophic or heterotrophic respiration. The soil surface respiration rates were related to plot basal area (living and all trees), as well as to soil temperature and soil moisture. As storm and bark beetle disturbances are predicted to become more common in the future, their effects on forest ecosystem C cycling and CO2 fluxes will therefore become increasingly important. Full article
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27 pages, 1552 KB  
Article
Using UAV-Based Photogrammetry and Hyperspectral Imaging for Mapping Bark Beetle Damage at Tree-Level
by Roope Näsi, Eija Honkavaara, Päivi Lyytikäinen-Saarenmaa, Minna Blomqvist, Paula Litkey, Teemu Hakala, Niko Viljanen, Tuula Kantola, Topi Tanhuanpää and Markus Holopainen
Remote Sens. 2015, 7(11), 15467-15493; https://doi.org/10.3390/rs71115467 - 18 Nov 2015
Cited by 352 | Viewed by 24458
Abstract
Low-cost, miniaturized hyperspectral imaging technology is becoming available for small unmanned aerial vehicle (UAV) platforms. This technology can be efficient in carrying out small-area inspections of anomalous reflectance characteristics of trees at a very high level of detail. Increased frequency and intensity of [...] Read more.
Low-cost, miniaturized hyperspectral imaging technology is becoming available for small unmanned aerial vehicle (UAV) platforms. This technology can be efficient in carrying out small-area inspections of anomalous reflectance characteristics of trees at a very high level of detail. Increased frequency and intensity of insect induced forest disturbance has established a new demand for effective methods suitable in mapping and monitoring tasks. In this investigation, a novel miniaturized hyperspectral frame imaging sensor operating in the wavelength range of 500–900 nm was used to identify mature Norway spruce (Picea abies L. Karst.) trees suffering from infestation, representing a different outbreak phase, by the European spruce bark beetle (Ips typographus L.). We developed a new processing method for analyzing spectral characteristic for high spatial resolution photogrammetric and hyperspectral images in forested environments, as well as for identifying individual anomalous trees. The dense point clouds, measured using image matching, enabled detection of single trees with an accuracy of 74.7%. We classified the trees into classes of healthy, infested and dead, and the results were promising. The best results for the overall accuracy were 76% (Cohen’s kappa 0.60), when using three color classes (healthy, infested, dead). For two color classes (healthy, dead), the best overall accuracy was 90% (kappa 0.80). The survey methodology based on high-resolution hyperspectral imaging will be of a high practical value for forest health management, indicating a status of bark beetle outbreak in time. Full article
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29 pages, 8182 KB  
Article
Automation Aspects for the Georeferencing of Photogrammetric Aerial Image Archives in Forested Scenes
by Kimmo Nurminen, Paula Litkey, Eija Honkavaara, Mikko Vastaranta, Markus Holopainen, Päivi Lyytikäinen-Saarenmaa, Tuula Kantola and Minna Lyytikäinen
Remote Sens. 2015, 7(2), 1565-1593; https://doi.org/10.3390/rs70201565 - 2 Feb 2015
Cited by 21 | Viewed by 9404
Abstract
Photogrammetric aerial film image archives are scanned into digital form in many countries. These data sets offer an interesting source of information for scientists from different disciplines. The objective of this investigation was to contribute to the automation of a generation of 3D [...] Read more.
Photogrammetric aerial film image archives are scanned into digital form in many countries. These data sets offer an interesting source of information for scientists from different disciplines. The objective of this investigation was to contribute to the automation of a generation of 3D environmental model time series when using small-scale airborne image archives, especially in forested scenes. Furthermore, we investigated the usability of dense digital surface models (DSMs) generated using these data sets as well as the uncertainty propagation of the DSMs. A key element in the automation is georeferencing. It is obvious that for images captured years apart, it is essential to find ground reference locations that have changed as little as possible. We studied a 68-year-long aerial image time series in a Finnish Karelian forestland. The quality of candidate ground locations was evaluated by comparing digital DSMs created from the images to an airborne laser scanning (ALS)-originated reference DSM. The quality statistics of DSMs were consistent with the expectations; the estimated median root mean squared error for height varied between 0.3 and 2 m, indicating a photogrammetric modelling error of 0.1‰ with respect to flying height for data sets collected since the 1980s, and 0.2‰ for older data sets. The results show that of the studied land cover classes, “peatland without trees” changed the least over time and is one of the most promising candidates to serve as a location for automatic ground control measurement. Our results also highlight some potential challenges in the process as well as possible solutions. Our results indicate that using modern photogrammetric techniques, it is possible to reconstruct 3D environmental model time series using photogrammetric image archives in a highly automated way. Full article
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18 pages, 643 KB  
Article
Classification of Needle Loss of Individual Scots Pine Trees by Means of Airborne Laser Scanning
by Tuula Kantola, Mikko Vastaranta, Päivi Lyytikäinen-Saarenmaa, Markus Holopainen, Ville Kankare, Mervi Talvitie and Juha Hyyppä
Forests 2013, 4(2), 386-403; https://doi.org/10.3390/f4020386 - 14 Jun 2013
Cited by 18 | Viewed by 7738
Abstract
Forest disturbances caused by pest insects are threatening ecosystem stability, sustainable forest management and economic return in boreal forests. Climate change and increased extreme weather patterns can magnify the intensity of forest disturbances, particularly at higher latitudes. Due to rapid responses to elevating [...] Read more.
Forest disturbances caused by pest insects are threatening ecosystem stability, sustainable forest management and economic return in boreal forests. Climate change and increased extreme weather patterns can magnify the intensity of forest disturbances, particularly at higher latitudes. Due to rapid responses to elevating temperatures, forest insect pests can flexibly change their survival, dispersal and geographic distributions. The outbreak pattern of forest pests in Finland has evidently changed during the last decade. Projection of shifts in distributions of insect-caused forest damages has become a critical issue in the field of forest research. The Common pine sawfly (Diprion pini L.) (Hymenoptera, Diprionidae) is regarded as a significant threat to boreal pine forests. Defoliation by D. pini has resulted in severe growth loss and mortality of Scots pine (Pinus sylvestris L.) (Pinaceae) in eastern Finland. In this study, tree-wise defoliation was estimated for five different needle loss category classification schemes and for 10 different simulated airborne laser scanning (ALS) pulse densities. The nearest neighbor (NN) approach, a nonparametric estimation method, was used for estimating needle loss of 701 Scots pines, using the means of individual tree features derived from ALS data. The Random Forest (RF) method was applied in NN-search. For the full dense data (~20 pulses/m2), the overall estimation accuracies for tree-wise defoliation level varied between 71.0% and 86.5% (kappa-values of 0.56 and 0.57, respectively), depending on the classification scheme. The overall classification accuracies for two class estimation with different ALS pulse densities varied between 82.8% and 83.7% (kappa-values of 0.62 and 0.67, respectively). We conclude that ALS-based estimation of needle losses may be of acceptable accuracy for individual trees. Our method did not appear sensitive to the applied pulse densities. Full article
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15 pages, 247 KB  
Article
Area-Based Mapping of Defoliation of Scots Pine Stands Using Airborne Scanning LiDAR
by Mikko Vastaranta, Tuula Kantola, Päivi Lyytikäinen-Saarenmaa, Markus Holopainen, Ville Kankare, Michael A. Wulder, Juha Hyyppä and Hannu Hyyppä
Remote Sens. 2013, 5(3), 1220-1234; https://doi.org/10.3390/rs5031220 - 7 Mar 2013
Cited by 29 | Viewed by 9696
Abstract
The mapping of changes in the distribution of insect-caused forest damage remains an important forest monitoring application and challenge. Efficient and accurate methods are required for mapping and monitoring changes in insect defoliation to inform forest management and reporting activities. In this research, [...] Read more.
The mapping of changes in the distribution of insect-caused forest damage remains an important forest monitoring application and challenge. Efficient and accurate methods are required for mapping and monitoring changes in insect defoliation to inform forest management and reporting activities. In this research, we develop and evaluate a LiDAR-driven (Light Detection And Ranging) approach for mapping defoliation caused by the Common pine sawfly (Diprion pini L.). Our method requires plot-level training data and airborne scanning LiDAR data. The approach is predicated on a forest canopy mask created by detecting forest canopy cover using LiDAR. The LiDAR returns that are reflected from the canopy (that is, returns > half of maximum plot tree height) are used in the prediction of the defoliation. Predictions of defoliation are made at plot-level, which enables a direct integration of the method to operational forest management planning while also providing additional value-added from inventory-focused LiDAR datasets. In addition to the method development, we evaluated the prediction accuracy and investigated the required pulse density for operational LiDAR-based mapping of defoliation. Our method proved to be suitable for the mapping of defoliated stands, resulting in an overall mapping accuracy of 84.3% and a Cohen’s kappa coefficient of 0.68. Full article
(This article belongs to the Special Issue Advances in Remote Sensing of Forestry)
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15 pages, 626 KB  
Article
Classification of Defoliated Trees Using Tree-Level Airborne Laser Scanning Data Combined with Aerial Images
by Tuula Kantola, Mikko Vastaranta, Xiaowei Yu, Paivi Lyytikainen-Saarenmaa, Markus Holopainen, Mervi Talvitie, Sanna Kaasalainen, Svein Solberg and Juha Hyyppa
Remote Sens. 2010, 2(12), 2665-2679; https://doi.org/10.3390/rs2122665 - 26 Nov 2010
Cited by 58 | Viewed by 10633
Abstract
Climate change and rising temperatures have been observed to be related to the increase of forest insect damage in the boreal zone. The common pine sawfly (Diprion pini L.) (Hymenoptera, Diprionidae) is regarded as a significant threat to boreal pine forests. Defoliation [...] Read more.
Climate change and rising temperatures have been observed to be related to the increase of forest insect damage in the boreal zone. The common pine sawfly (Diprion pini L.) (Hymenoptera, Diprionidae) is regarded as a significant threat to boreal pine forests. Defoliation by D. pini can cause severe growth loss and tree mortality in Scots pine (Pinus sylvestris L.) (Pinaceae). In this study, logistic LASSO regression, Random Forest (RF) and Most Similar Neighbor method (MSN) were investigated for predicting the defoliation level of individual Scots pines using the features derived from airborne laser scanning (ALS) data and aerial images. Classification accuracies from 83.7% (kappa 0.67) to 88.1% (kappa 0.76) were obtained depending on the method. The most accurate result was produced using RF with a combination of data from the two sensors, while the accuracies when using ALS and image features separately were 80.7% and 87.4%, respectively. Evidently, the combination of ALS and aerial images in detecting needle losses is capable of providing satisfactory estimates for individual trees. Full article
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