Comparative Mitochondrial Genome Analysis of Two Ectomycorrhizal Fungi (Rhizopogon) Reveals Dynamic Changes of Intron and Phylogenetic Relationships of the Subphylum Agaricomycotina
Abstract
:1. Introduction
2. Results
2.1. Features and Protein Coding Genes of the Rhizopogon Mitogenomes
2.2. RNA Genes in the Rhizopogon Mitogenomes
2.3. Overlapping Nucleotides and Composition of Mitogenomes
2.4. Codon Usage Analysis
2.5. Repetitive Sequences Analysis
2.6. Variation, Genetic Distance, and Evolutionary Rates of Core Genes
2.7. Dynamic Changes of Introns in Rhizopogon Mitogenomes
2.8. Gene Arrangement and Phylogenetic Analysis
3. Discussion
4. Materials and Methods
4.1. De Novo Assembly and Annotation of Mitogenomes
4.2. Sequence Analysis
4.3. Repetitive Elements Analysis
4.4. Intron Analysis
4.5. Phylogenetic Analysis
4.6. Availability of Data
Supplementary Materials
Author Contributions
Funding
Acknowledgments
Conflicts of Interest
References
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Li, Q.; Ren, Y.; Shi, X.; Peng, L.; Zhao, J.; Song, Y.; Zhao, G. Comparative Mitochondrial Genome Analysis of Two Ectomycorrhizal Fungi (Rhizopogon) Reveals Dynamic Changes of Intron and Phylogenetic Relationships of the Subphylum Agaricomycotina. Int. J. Mol. Sci. 2019, 20, 5167. https://doi.org/10.3390/ijms20205167
Li Q, Ren Y, Shi X, Peng L, Zhao J, Song Y, Zhao G. Comparative Mitochondrial Genome Analysis of Two Ectomycorrhizal Fungi (Rhizopogon) Reveals Dynamic Changes of Intron and Phylogenetic Relationships of the Subphylum Agaricomycotina. International Journal of Molecular Sciences. 2019; 20(20):5167. https://doi.org/10.3390/ijms20205167
Chicago/Turabian StyleLi, Qiang, Yuanhang Ren, Xiaodong Shi, Lianxin Peng, Jianglin Zhao, Yu Song, and Gang Zhao. 2019. "Comparative Mitochondrial Genome Analysis of Two Ectomycorrhizal Fungi (Rhizopogon) Reveals Dynamic Changes of Intron and Phylogenetic Relationships of the Subphylum Agaricomycotina" International Journal of Molecular Sciences 20, no. 20: 5167. https://doi.org/10.3390/ijms20205167