Correction: Nikitin, D., et al. Retroelement—Linked Transcription Factor Binding Patterns Point to Quickly Developing Molecular Pathways in Human Evolution. Cells 2019, 8, 130
Conflicts of Interest
References
- Nikitin, D.; Garazha, A.; Sorokin, M.; Penzar, D.; Tkachev, V.; Markov, A.; Gaifullin, N.; Borger, P.; Poltorak, A.; Buzdin, A.A. Retroelement-Linked Transcription Factor Binding Patterns Point to Quickly Developing Molecular Pathways in Human Evolution. Cells 2019, 8, 130. [Google Scholar] [CrossRef] [PubMed]
Cell Line | Number of TFs Profiled | Number of Mapped TFBS | Number of TFBS Mapped on SINEs | Percentage of TFBS Mapped on SINEs | Number of TFBS Mapped on LINEs | Percentage of TFBS Mapped on LINEs | Number of TFBS Mapped on LR/ERVs | Percentage of TFBS Mapped on LR/ERVs | Number of TFBS Mapped on All Classes | Percentage of TFBS Mapped on All Classes |
---|---|---|---|---|---|---|---|---|---|---|
K562 | 265 | 78,021,500 | 25,078,428 | 32.1 | 22,646,141 | 29 | 10,394,662 | 13.3 | 47,072,030 | 60.3 |
HepG2 | 175 | 51,982,065 | 16,406,062 | 31.6 | 140,104,77 | 27 | 6,493,562 | 12.5 | 30,359,142 | 58.4 |
HEK293 | 177 | 53,100,000 | 19,214,015 | 36.2 | 15,708,687 | 29.6 | 6,089,813 | 11.5 | 33,394,943 | 62.9 |
GM12878 | 127 | 37,688,353 | 10,185,415 | 27 | 9,927,943 | 26.3 | 4,727,719 | 12.5 | 20,728,922 | 55 |
MCF-7 | 80 | 23,851,396 | 7,039,271 | 29.5 | 7,499,703 | 31.4 | 3,297,443 | 13.8 | 14,788,900 | 62 |
A549 | 44 | 13,044,409 | 3,930,407 | 30.1 | 3,569,214 | 27.4 | 1,667,464 | 12.8 | 7,524,691 | 57.7 |
HeLa-S3 | 15 | 4,500,000 | 1,112,669 | 24.7 | 1,036,667 | 23 | 566,618 | 12.6 | 2,311,571 | 51.3 |
SK-N-SH | 15 | 4,500,000 | 874,572 | 19.4 | 958,401 | 21.3 | 473,342 | 10.5 | 2,015,301 | 44.3 |
HCT116 | 4 | 1,200,000 | 402,872 | 33.6 | 333,771 | 27.8 | 181,562 | 15.1 | 732,432 | 61 |
Ishikawa | 4 | 1,200,000 | 268,209 | 22.4 | 266,191 | 22.2 | 141,530 | 11.8 | 588,478 | 49 |
HEK293T | 17 | 5,100,000 | 129,7870 | 25.4 | 1,725,589 | 33.8 | 618,745 | 12.1 | 3,050,402 | 59.8 |
MCF_10A | 3 | 900,000 | 214,458 | 23.8 | 215,576 | 24 | 103,925 | 11.5 | 449,290 | 49.9 |
GM12891 | 7 | 2,100,000 | 559,260 | 26.6 | 433,194 | 20.6 | 253,577 | 12.1 | 1,058,657 | 50.4 |
Cell Line | Number of TFs Profiled | Number of Mapped TFBS | Number of TFBS Mapped on SINEs | Percentage of TFBS Mapped on SINEs | Number of TFBS Mapped on LINEs | Percentage of TFBS Mapped on LINEs | Number of TFBS Mapped on LR/ERVs | Percentage of TFBS Mapped on LR/ERVs | Number of TFBS Mapped on All Classes | Percentage of TFBS Mapped on All Classes |
---|---|---|---|---|---|---|---|---|---|---|
K562 | 260 | 12,547,055 | 4,667,810 | 37.2 | 2,508,956 | 20 | 1,081,084 | 8.6 | 6,782,652 | 54.1 |
HepG2 | 175 | 8,803,748 | 3,023,414 | 34.3 | 1,559,929 | 17.7 | 669,907 | 7.6 | 4,366,650 | 49.6 |
HEK293 | 177 | 8,074,128 | 3,235,573 | 40.1 | 1,569,002 | 19.4 | 587,798 | 7.3 | 4,450,113 | 55.1 |
GM12878 | 127 | 5,626,411 | 1,699,882 | 30.2 | 970,626 | 17.3 | 400,502 | 7.1 | 2,589,335 | 46 |
MCF-7 | 80 | 3,067,441 | 1,029,118 | 33.5 | 598,982 | 19.5 | 238,005 | 7.8 | 1,560,667 | 50.9 |
A549 | 44 | 2,035,359 | 662,458 | 32.5 | 358,084 | 17.6 | 142,842 | 7 | 969,614 | 47.6 |
HeLa-S3 | 15 | 720,963 | 193,365 | 26.8 | 109,683 | 15.2 | 47,759 | 6.6 | 301,213 | 41.8 |
SK-N-SH | 15 | 679,254 | 139,230 | 20.5 | 90,313 | 13.3 | 36,751 | 5.4 | 233,827 | 34.4 |
HCT116 | 4 | 202,223 | 71,590 | 35.4 | 38,293 | 18.9 | 16,878 | 8.3 | 103,766 | 51.3 |
Ishikawa | 4 | 194,053 | 52,211 | 26.9 | 28,867 | 14.9 | 12,768 | 6.6 | 80,822 | 41.6 |
HEK293T | 17 | 518,287 | 162,440 | 31.3 | 115,555 | 22.3 | 42,242 | 8.2 | 266,806 | 51.5 |
MCF_10A | 3 | 145,892 | 43,930 | 30.1 | 25,500 | 17.5 | 10,304 | 7.1 | 66,090 | 45.3 |
GM12891 | 7 | 427,212 | 94,464 | 22.1 | 48,947 | 11.5 | 21,515 | 5 | 179,956 | 42.1 |
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Nikitin, D.; Garazha, A.; Sorokin, M.; Penzar, D.; Tkachev, V.; Markov, A.; Gaifullin, N.; Borger, P.; Poltorak, A.; Buzdin, A. Correction: Nikitin, D., et al. Retroelement—Linked Transcription Factor Binding Patterns Point to Quickly Developing Molecular Pathways in Human Evolution. Cells 2019, 8, 130. Cells 2019, 8, 832. https://doi.org/10.3390/cells8080832
Nikitin D, Garazha A, Sorokin M, Penzar D, Tkachev V, Markov A, Gaifullin N, Borger P, Poltorak A, Buzdin A. Correction: Nikitin, D., et al. Retroelement—Linked Transcription Factor Binding Patterns Point to Quickly Developing Molecular Pathways in Human Evolution. Cells 2019, 8, 130. Cells. 2019; 8(8):832. https://doi.org/10.3390/cells8080832
Chicago/Turabian StyleNikitin, Daniil, Andrew Garazha, Maxim Sorokin, Dmitry Penzar, Victor Tkachev, Alexander Markov, Nurshat Gaifullin, Pieter Borger, Alexander Poltorak, and Anton Buzdin. 2019. "Correction: Nikitin, D., et al. Retroelement—Linked Transcription Factor Binding Patterns Point to Quickly Developing Molecular Pathways in Human Evolution. Cells 2019, 8, 130" Cells 8, no. 8: 832. https://doi.org/10.3390/cells8080832