Next Article in Journal
Dose-Dependent Responses of I3C and DIM on T-Cell Activation in the Human T Lymphocyte Jurkat Cell Line
Next Article in Special Issue
The Candida albicans Inhibitory Activity of the Extract from Papaya (Carica papaya L.) Seed Relates to Mitochondria Dysfunction
Previous Article in Journal
Estrogen Promotes Hepatic Synthesis of Long-Chain Polyunsaturated Fatty Acids by Regulating ELOVL5 at Post-Transcriptional Level in Laying Hens
 
 
Search for Articles:
Title / Keyword
Author / Affiliation / Email
Journal
Article Type
 
 
Advanced Search
 
Section
Special Issue
Volume
Issue
Number
Page
 
Journals
IJMS
Volume 18
Issue 7
10.3390/ijms18071342
ijms-logo
Submit to this Journal Review for this Journal Propose a Special Issue
► Article Menu

Article Menu

share Share announcement Help format_quote Cite question_answer Discuss in SciProfiles thumb_up
...
Endorse textsms
...
Comment
first_page
settings
Order Article Reprints
Font Type:
Arial Georgia Verdana
Font Size:
Aa Aa Aa
Line Spacing:
Column Width:
Background:
Article

GC-MS Fingerprinting Combined with Chemometric Methods Reveals Key Bioactive Components in Acori Tatarinowii Rhizoma

by
Wenbin Liu
1,
Bingyang Zhang
2,
Zhongquan Xin
1,
Dabing Ren
1 and
Lunzhao Yi
1,*
1
Yunnan Food Safety Research Institute, Kunming University of Science and Technology, Kunming 650500, China
2
School of Science, Kunming University of Science and Technology, Kunming 650500, China
*
Author to whom correspondence should be addressed.
Int. J. Mol. Sci. 2017, 18(7), 1342; https://doi.org/10.3390/ijms18071342
Submission received: 16 May 2017 / Revised: 12 June 2017 / Accepted: 20 June 2017 / Published: 3 July 2017
(This article belongs to the Special Issue Selected Papers from 3-ISPMF, 3rd International Symposium on Phytochemicals in Medicine and Food (Kunming, 2018))
Browse Figures
Versions Notes

Abstract

:
This present study aims to identify the key bioactive components in acorus tatarinowii rhizoma (ATR), a traditional Chinese medicine (TCM) with various bioactivities. Partial least squares regression (PLSR) was employed to describe the relationship between the radical scavenging activity and the volatile components. The PLSR model was improved by outlier elimination and variable selection and was evaluated by 10-fold cross-validation and external validation in this study. Based on the PLSR model, eleven chemical components were identified as the key bioactive components by variable importance in projection. The final PLS regression model with these components has good predictive ability. The Q2 was 0.8284, and the root mean square error for prediction was 2.9641. The results indicated that the eleven components could be a pattern to predict the radical scavenging activity of ATR. In addition, we did not find any specific relationship between the radical scavenging ability and the habitat of the ATRs. This study proposed an efficient strategy to predict bioactive components using the combination of quantitative chromatography fingerprints and PLS regression, and has potential perspective for screening bioactive components in complex analytical systems, such as TCM.

Graphical Abstract

1. Introduction

Acori tatarinowii rhizoma (ATR) is a traditional Chinese medicine (TCM) used for thousands of years because of its low toxicity and various bioactivities. Many studies reported the significant clinical effect of ATR for the treatment of diseases, such as epilepsy [1,2] nervous disorders [3,4,5,6], depression [4], cancers [7], skin diseases [8], and Alzheimer’s disease [9]. The research on ATR mainly focuses on its antioxidant activity. Some reports suggested that antioxidants can scavenge free radicals and reduce lipid peroxidation, protein peroxidation, and DNA damage of free radicals [10,11]. The studies on the antioxidants in food, plant materials, and TCMs recently attracted increasing attention [12,13]. However, most studies only evaluated the antioxidant activity of plant extracts or certain chemical components; whether these components are the key antioxidants in the extracts remains poorly understood. Many reports have proven the antioxidant activities of volatile oils in ATR [14]. However, the specific components responsible for these bioactivities remain unknown.
Volatile oils have complex chemical compounds [13], consisting of phenylpropanoid, sesquiterpene, oxygenated-sesquiterpene, monoterpene, and oxygenated-monoterpene [15]. Chromatographic fingerprint is used to characterize the complex chemical composition of TCMs [16,17]. This method was introduced by the World Health Organization to control the quality of TCMs and overcome the limitations when using few marker components [18,19]. Techniques, such as gas chromatography–mass spectrometry (GC-MS) [20], high performance liquid chromatography–diode array detector/mass spectrometry (HPLC-DAD/MS) [21,22], and high performance capillary electrophoresis–mass spectrometry (CE-MS) [23], are commonly used to measure the chromatographic fingerprints of TCMs. In this study, GC-MS fingerprinting was used to measure the complexity of volatile components in ATR.
Evaluating the bioactivities of each component of ATR volatiles is difficult due to its complexity. Chemometrics became popular because it can deal with groups of variables or discover sets of related predictors. Partial least squares regression (PLSR) [24,25], network-induced supervised learning [26], support vector machine [27], and some penalized methods were proposed for data analysis of complex analytical systems [28]. Multivariate calibration techniques are used to extract information from high throughput analytical data. For example, Liu et al. revealed the antioxidant components in Turpiniae Folium (TF) through PLSR using the information of multi-wavelength fingerprints generated by HPLC and the antioxidant capacity of TFs [18]. These techniques can help reveal the chemical features of TCMs with minimum sample preparation, together with reasonable accuracy and precision without expensive and time-consuming preliminary separation steps, which are usually required for complex systems [29,30,31].
This study aims to identify the key bioactive components in ATR for radical scavenging activity. The volatile components in the deliberately collected 49 ATR samples were analyzed by GC-MS. The bioactivity of the volatile oils in ATR was evaluated by 2,2-diohenyl-1-picryl-hydrazyl (DPPH) radical scavenging assay. Furthermore, a PLS regression model between the radical scavenging activity and the contents of volatile components was established and evaluated by using 10-fold cross-validation and external validation.

2. Results and Discussion

2.1. GC-MS Fingerprinting and DPPH Radical Scavenging Assay

The chromatographic fingerprints of 49 ATR samples were obtained by GC-MS analysis and were used to reflect the complexity of volatile chemical components. The representative total ion chromatogram (TIC) of ATR is shown in Figure 1. Eighty components were detected. All GC-MS data, including retention characteristics, peak intensities, and integrated mass spectra, of each sample were used for the qualitative and quantitative analyses. First, the automated mass-spectral deconvolution and identification system (Automatic Mass Spectral Deconvolution and Identification software (AMDIS) software, National Institute of Standards and Technology, Gaithersburg, MD, USA) was used for peak finding and deconvolution. Component identification was based on the comparison of the mass spectrum of putative component with those of the NIST 2005 Mass Spectral Library and NIST 2011. In addition, the chemical components were further identified by temperature-programmed retention indices. The detailed qualitative process was shown in our previous study [15]. Seventy-four volatiles were identified; nine of which, namely, methyleugenol, transmethylisoeugenol, linaool, α-pinene, (–)-terpinen-4-ol, α-terpieol, bornylacetate, α-asarone, and β-asarone, were identified by commercial standard substances. The relative concentration of an individual component was expressed by the ratio of peak area of one component to the internal standard (undecane) on the same TIC. The qualitative and quantitative results are shown in Table S1.
The bioactivities of ATR essential oils were determined by the DPPH radical scavenging assay. The radical scavenging activity was expressed by the equivalent concentration of quercetin. The radical scavenging activities had a maximum value of 41.99 µg/mL, minimum value of 11.60 µg/mL, and mean value of 25.61 µg/mL. The radical scavenging activities of the 49 ATR samples were significantly different. Furthermore, the strongest and the weakest samples are both cultivated in Sichuan province. The result indicated that there is no specific relationship available between the radical scavenging ability and the habitat of the ATR.

2.2. PLSR Model between the Radical Scavenging Activity and the Contents of Volatile Components

Partial least squares regression models were established for the contents of volatile components (matrix X) and the results of DPPH radical scavenging assay (matrix Y) to describe the relationship between the radical scavenging activities and the chemical components. First, the dataset of 49 samples (49 × 80, samples × variables) were used to build the PLS regression model. Thirty-nine samples were selected as the calibration set by using the Kennard–Stone algorithm, and the remaining 10 samples were used as the validation set. For the calibration set, the maximum, minimum, and mean values of the radical scavenging activity were 41.99, 11.60, and 25.97 µg/mL, respectively. For the validation set, the maximum, minimum, and mean values of the radical scavenging activity were 41.27, 14.96, and 24.21 µg/mL, respectively. The distribution of the radical scavenging activity values was similar for the calibration and validation sets. The two datasets were reasonably partitioned. The first eight latent variables were used to establish the PLS regression model as determined by the 10-fold cross-validation. The R2 and Q2 values of the model were 0.8284 and 0.7824, respectively, as shown in Table 1. MCCV method was introduced to identify the outliers of the dataset and improve the predictive ability of the regression model. Monte-Carlo sampling was conducted to select 40 ATR data from the original data (49 × 80) to build the PLS regression model. The rest of the data were used as the validation set to evaluate the model. The distribution of the predicted values of DPPH radical scavenging assay for each sample was obtained after sampling 2000 times. The standard deviation and mean predicted values were calculated for each sample as shown in Figure 2. Samples 31, 32, 37, 38, 48, and 49 were identified as outliers in the X-axis and Y-axis directions.
The new dataset (43 × 80) was generated after outlier elimination. Thirty-four samples were selected as the calibration set by the Kennard–Stone algorithm, and the remaining nine samples were used as the validation set. The distribution of radical scavenging activity values was similar before and after the outlier elimination. The new calibration set and validation set were reasonably partitioned. The new PLS regression model is shown in Figure 4B and was established by using the first six latent variables selected by 10-fold cross validation, as shown in Figure 3A. The R2 and Q2 values of the model were improved to 0.9090 and 0.8124, respectively, as shown in Table 1. RMSECV decreased from 5.0261 to 3.4109, and RMSEP decreased from 3.2210 to 3.0996. Other parameters for the PLS regression model were compared in Table 1. The results indicated that the efficiency of the model was significantly improved after the outlier elimination. Before the PLS model was selected, both cross validation and external validation was used. The results indicated that the models are not overfitted.

2.3. Key Bioactive Components in ATR for Radical Scavenging Activity

The present study aims to identify the key components in volatile oils that correspond to the radical scavenging activity of ATR. Thus, the regression coefficient (RC) and variable importance in projection (VIP) methods were employed. A higher absolute value of RC or VIP indicates the bigger contribution of this specific component. These values are scaled and centered, so they are comparable. The RC and VIP values of the 80 components were plotted from the PLSR model (43 × 80) as shown in Figure 4B,C. In addition, combination effect of variables was taken into account in this study [32]. Predictive ability of different variable combinations was compared in order to select the best components’ pattern and help us to define the threshold of variable selection, as shown in Figure 5A. For VIP method, when the number of variables is eleven, Q2 of the PLSR model obtained the best results, as shown in Figure 5A and Table 1. The results of VIP are better than RC. Thus, the first eleven components were identified as responsible for the radical scavenging activity of ATR volatile oil in this study. They are estragole, methyleugenol, cis-methylisoeugenol, isoshyobunone, δ-cadinene, calacorene, γ-asarone, β-asarone, α-asarone, calamusenone, isocalamendiol. Previous studies on ATR volatile oil mainly focused on the two components, α-asarone and β-asarone. These components account for approximately 95% of ATR volatile oils [33]. Thus far, several publications have reported the antioxidant ability of β-asarone, α-asarone [34], and the isoshyobunone, isocalamendiol, and calacorene are the constituents of essential oils with antioxidant activity [35]. The other components are not reported for antioxidant bioactivity, but having other bioactivities. For example, γ-asarone exhibited its fungitoxicity against Aspergillus flavus [36]. The isocalamendiol in Zibu Piyin recipe exhibited ameliorating effects on scopolamine-induced memory dysfunction [37]. Calamusenone have insecticidal and repellant activities [38,39]. δ-Cadinene in Psidium cattleianum Sabine has antimicrobial and antioxidant activities [40]. The present study firstly reveals the eleven volatiles as a pattern for predict the radical scavenging activity of ATR. Our findings provide a new focus for the research of bioactivities of ATR.

3. Materials and Methods

3.1. Materials

Methyleugenol (purity: 98%), trans-methylisoeugenol (purity: 98%), (−)-terpinen-4-ol (purity: 97%), α-terpieol (purity: 97%), bornylacetate (purity: 98%), α-pinene (purity: 98%), undecane (purity: 99%), and linalool (purity: 99%) were obtained from J&K Technology (Beijing, China). β-asarone (purity: 98%), α-asarone (70%), and DPPH were purchased from Sigma-Aldrich (St. Louis, MO, USA). The alkane standard solution of C8–C20 was obtained from Fluka Chemika (Buchs, Switzerland). Quercetin (purity: 99%) was purchased from the National Institute for Food and Drug Control (Beijing, China). Methanol, hexane, and anhydrous sodium sulfate were of analytical grade. Forty-nine batches of ATR samples were deliberately collected from Sichuan, Anhui, Shanxi, Hunan, Hebei, Jiangxi, and Henan Provinces in China. These samples were authenticated by Shao Liu (Xiangya Hospital, Central South University). The specimens are currently preserved in the institute mentioned above.

3.2. Extraction of Volatile Oil

All samples were dried at 40 °C for 2 h, followed by pulverization. Volatile oil was extracted according to the procedure described in the Chinese Pharmacopoeia [41]. Briefly, 800 mL of distilled water and 80 g of the sample were added to the standard extractor. The sample was extracted for 4 h with 4 D/min reflux rate. Moderate anhydrous sodium sulfate was added to remove the trace amounts of water. All volatile oils were stored in brown syringes at 4 °C, followed by GC-MS analysis. Undecane was selected as the internal standard in this study.

3.3. DPPH Radical Scavenging Assay

The bioactivities of the 49 ATR samples were determined using the DPPH radical scavenging assay. The DPPH radical has a maximum absorbance at 517 nm, which disappeared upon reduction in the presence of antioxidant components in each sample. This phenomenon resulted in a negative correlation between the remaining absorbance at 517 nm and the radical scavenging activity of the sample.
The DPPH assay was conducted as described by Pérez-Meseguer et al. [42] with some modifications. First, the extract was filtered through a 0.45 µm membrane and subsequently diluted 10 times with methanol. The assay mixture comprised ATR extract (0.2 mL) and DPPH solution (41 µg/mL in anhydrous ethanol, 3.8 mL). The quercetin standard solution was used as the positive control, which was diluted with methanol to obtain serial dilutions (5–50 µg/mL). The assay mixture was kept in the dark at room temperature. After 30 min, the absorbance was measured at 517 nm using a UV-Vis spectrophotometer. The radical scavenging activity was calculated by standard curve. DPPH assay and GC-MS analysis were simultaneously conducted to avoid possible variations caused by the degradation of the samples during storage. Each measurement was performed in triplicates. The antioxidant capacity was expressed by the equivalent concentration of quercetin.

3.4. GC-MS Analysis

GC-MS analyses were conducted with a Shimadzu GC-2010 gas chromatograph (Kyoto, Japan) coupled with a Shimadzu QP2010 mass spectrometer. The column initial temperature was maintained at 60 °C for 1 min. The column temperature was programmed from 60 to 140 °C at the rate of 5 °C/min, held for 20 min at 140 °C, ramped at a rate of 10 °C/min to 220 °C, and then held for 5 min at 220 °C. The sample (1.0 µL) was injected into a fused-silica capillary column OV-1 (30 m × 0.25 mm with i.d. film thickness of 0.25 µm) with a split ratio of 1:10. The flow rate of the high-purity helium carrier gas was 0.8 mL/min. The injector temperature was 250 °C, and the septum purge flow rate was 3 mL/min. The mass conditions were as follows: interface temperature, 250 °C; ion source temperature, 200 °C; ionization voltage, 70 eV; detector voltage, 0.9 kV; solvent delay, 3 min; and full scan mode in the 35–800 m/z mass ranges with 0.2/s scan velocities.
Quality control sample was used in this study. For the 49 ATR samples, 10 uL volatile oil of each sample was pooled, then vigorously vortexed for 1 min, to be the quality control sample. The sample injection order is random, one quality control sample after four ATR samples.

3.5. Statistical Analysis

3.5.1. Partial Least Squares Regression (PLSR)

PLS can help us to obtain the latent variables, then, build a multivariate linear model between two data matrices, X and Y [43]. This method is very efficient, especially for high dimensional datasets. The PLSR model could be improved by optimizing the number of latent variables. In addition, variable selection is very important to optimize a PLSR model.
In this study, a regression model between the radical scavenging activities and the contents of volatile components was constructed by PLS. Data was centered before the PLS model was developed. Data were partitioned into calibration (80%) and validation (20%) sets using Kennard–Stone algorithm [44]. The number of latent variables were optimized by 10-fold cross validation for the calibration set. The overfitting possibilities of the PLSR model were evaluated by 10-fold cross validation and external validation. The established PLSR models were evaluated using the root mean square error of cross-validation (RMSECV), root mean square error of calibration (RMSEC), root mean square error of prediction (RMSEP), determination coefficient for calibration set (R2), and determination coefficient for validation set (Q2) [18,43].

3.5.2. Outlier Identification

Outliers are the data that fall outside the population and were caused by measurement error, sudden changes in experiment conditions, and sample properties [45]. Outliers greatly influence the regression solution, and the existence of such data points might lead to considerable deviations from normality [46]. In this study, the outliers were identified based on Monte-Carlo cross-validation (MCCV) [47]. First, the original data was sampled 2000 times. A fixed percentage (80%) of the samples was randomly selected to build the PLS regression model, and the rest of the data was used to validate the model. The prediction error distribution for each sample was obtained after 2000 times sampling. The distribution of mean value and standard deviation were calculated for each sample. A four-zone scatter plot was established by using the mean value as the coordinate in the X-axis and the standard deviation as the coordinate in the Y-axis, as shown in Figure 5. In this study, 2.5 times of average value (mean value or standard deviation) were selected on the X- and Y-axes to divide the graph into a four-zone scatter plot, according to the suggestion of Reference [38]. PLSR and MCCV were performed using Matlab 7.10.0 software (R2010a, The Math Works Inc., Natick, MA,USA).

4. Conclusions

This study proposed an efficient strategy to reveal the key chemical components responsible for the bioactivity of ATR. Chemical components in ATR volatile oils were profiled by GC-MS. A PLSR model between the radical scavenging activity and the contents of volatile components was established. After the outliers were eliminated by MCCV, and informative variables were selected by VIP and RC, the PLSR model was improved significantly and was proven highly reliable. Eleven components, namely, estragole, methyleugenol, cis-methylisoeugenol, isoshyobunone, δ-cadinene, calacorene, γ-asarone, β-asarone, α-asarone, calamusenone, isocalamendiol, were identified using the VIP method. These components formed a pattern and are probably responsible for the radical scavenging activity of ATR and are worthy of further study.

Supplementary Materials

Supplementary materials can be found at www.mdpi.com/1422-0067/18/7/1342/s1.

Acknowledgments

This work was financially supported by the Fund for Less Developed Regions of the National Natural Science Foundation of China (No. 21465016).

Author Contributions

Wenbin Liu and Lunzhao Yi conceived and designed the experiments; Wenbin Liu performed the experiments; Dabing Ren and Bingyang Zhang analyzed the data; Zhongquan Xin contributed reagents/materials/analysis tools; Wenbin Liu and Lunzhao Yi wrote the paper.

Conflicts of Interest

The authors declare no conflict of interest.

References

  1. Liao, W.P.; Li, C.P.; Yi, Y.H.; Sun, W.W.; Gao, M.M.; Tao, S.; Yang, S.Q. Study of Antiepileptic Effect of Extracts from Acorus tatarinowii Schott. Epilepsia 2005, 46, 21–24. [Google Scholar] [CrossRef] [PubMed]
  2. Nandakumar, S.; Menom, S.; Shailajan, S. A rapid HPLC-ESI-MS/MS method for determination of β-asarone, a potential anti-epileptic agent, in plasma after oral administration of Acorus calamus extract to rats. Biomed. Chromatogr. 2013, 27, 318–326. [Google Scholar] [CrossRef] [PubMed]
  3. Mukherjee, P.K.; Kumar, V.; Mal, M.; Houghton, P.J. In vitro acetylcholinesterase inhibitory activity of the essential oil from Acorus calamus and its main constituents. Planta Med. 2007, 73, 283–285. [Google Scholar] [CrossRef] [PubMed]
  4. Han, P.; Han, T.; Peng, W.; Wang, X.R. Antidepressant-like effects of essential oil and asarone, a major essential oil component from the rhizome of Acorus tatarinowii. Pharm. Boil. 2013, 51, 589–594. [Google Scholar] [CrossRef] [PubMed]
  5. Wei, G.; Chen, Y.B.; Chen, D.F.; Lai, X.P.; Liu, D.H.; Deng, R.D.; Zhou, J.H.; Zhang, S.H.; Li, Y.W.; Li, H.; et al. β-Asarone inhibits neuronal apoptosis via the CaMKII/CREB/Bcl-2 signaling pathway in an in vitro model and AbetaPP/PS1 mice. J. Alzheimer’s Dis. 2013, 33, 863–880. [Google Scholar]
  6. Yang, Y.X.; Chen, Y.T.; Zhou, X.J.; Hong, C.L.; Li, C.Y.; Guo, J.Y. β-asarone, a major component of Acorus tatarinowii Schott, attenuates focal cerebral ischemia induced by middle cerebral artery occlusion in rats. BMC Complement. Altern. Med. 2013, 13, 1–6. [Google Scholar] [CrossRef] [PubMed]
  7. Liu, L.; Wang, L.; Shi, L.; Zhang, Z.; Du, X.; Wang, Z.; Zhang, Z. β-Asarone induces senescence in colorectal cancer cells by inducing lamin B1 expression. Phytomedicine 2013, 20, 512–520. [Google Scholar] [CrossRef] [PubMed]
  8. Jee, Y.L.; Jung, Y.L.; Bongsik, Y.; Byung, K.H. Antifungal Activity of β-Asarone from Rhizomes of Acorus gramineus. J. Agric. Food Chem. 2004, 52, 776–780. [Google Scholar]
  9. Zhuang, Y.L.; Ma, Q.Y.; Guo, Y.; Sun, L.P. Protective effects of rambutan (Nephelium lappaceum) peel phenolics on H2O2-induced oxidative damages in HepG2 cells and d-galactose-induced aging mice. Food Chem. Toxicol. 2017. [Google Scholar] [CrossRef] [PubMed]
  10. Loizzo, M.; Sicari, V.I.; Tenuta, M.C.; Leporini, M.R.; Falco, T.; Pellicanò, T.M.; Menichini, F.; Tundis, R. Phytochemicals content, antioxidant and hypoglycaemic activities of commercial nutmeg mace (Myristica fragrans L.) and pimento (Pimenta dioica(L.) Merr.). Int. J. Food Sci. Tech. 2016, 51, 2057–2063. [Google Scholar] [CrossRef]
  11. Huang, H.J.; Chen, H.Y.; Chang, Y.S.; Chen, C.C. Insight into two antioxidants binding to the catalase NADPH binding site from traditional Chinese medicines. RSC Adv. 2015, 5, 6625–6635. [Google Scholar] [CrossRef]
  12. Wang, S.T.; Gao, W.; Fan, Y.X.; Liu, X.G.; Liu, K.; Du, Y.; Wang, L.L.; Li, H.J.; Li, P.; Yang, H. Phenol profiles and antioxidant capacities of Bistort Rhizoma (Polygonum bistorta L.) extracts. RSC Adv. 2016, 6, 27320–27328. [Google Scholar] [CrossRef]
  13. Liu, C.; Zhang, A.H.; Han, Y.; Lu, S.W.; Sun, H.; Yan, G.L.; Wang, P.; Wang, X.J. Ultra-High Performance Liquid Chromatography Coupled with Time-of-flight Mass Spectrometry Screening and Analyzing the Potential Bioactive Compounds from Traditional Chinese Medicine Kaixin San, Using Multivariate Data Processing Approach and Metabolynx To. RSC Adv. 2014, 5, 85–92. [Google Scholar] [CrossRef]
  14. Devi, S.A.; Ganjewala, D. Antioxidant Activities of Methanolic Extracts of Sweet-Flag (Acorus calamus) Leaves and Rhizomes. J. Herbs Spices Med. Plants 2011, 17, 1–11. [Google Scholar] [CrossRef]
  15. Zhang, X.J.; Yi, L.Z.; Deng, B.C.; Chen, L.C.; Shi, S.T.; Zhuang, Y.L.; Zhang, Y. Discrimination of Acori Tatarinowii Rhizoma and Acori Calami Rhizoma based on quantitative gas chromatographic fingerprints and chemometric methods. J. Sep. Sci. 2015, 38, 4078–4085. [Google Scholar] [CrossRef] [PubMed]
  16. Yi, L.Z.; Dong, N.P.; Liu, S.; Yi, Z.B.; Zhang, Y. Chemical features of Pericarpium Citri Reticulatae and Pericarpium Citri Reticulatae Viride revealed by GC-MS metabolomics analysis. Food Chem. 2014, 186, 192–199. [Google Scholar] [CrossRef] [PubMed]
  17. Liu, Y.; Sun, G.X.; Luan, J.Y.; Ling, J.H.; Zhang, J.; Yang, F.L. A comprehensive strategy to monitor quality consistency of Weibizhi tablets based on integrated MIR and UV spectroscopic fingerprints, a systematically quantified fingerprint method, antioxidant activities and UPLC-Q-TOF-MS chemical profiling. RSC Adv. 2015, 6, 366–375. [Google Scholar] [CrossRef]
  18. Liu, X.; Zhan, H.; Qiao, Z.; Zheng, M.; Liu, W.Y.; Feng, F.; Yan, F.R. Chemometric analysis based on HPLC multi-wavelength fingerprints for prediction of antioxidant components in Turpiniae Folium. Chemom. Intell. Lab. 2016, 152, 54–61. [Google Scholar] [CrossRef]
  19. Fan, X.H.; Cheng, Y.Y.; Ye, Z.L.; Lin, R.C.; Qian, Z.Z. Multiple chromatographic fingerprinting and its application to the quality control of herbal medicines. Anal. Chim. Acta 2006, 555, 217–224. [Google Scholar] [CrossRef]
  20. Xin, Z.Q.; Ren, D.B.; Zhang, X.J.; Yi, Z.B.; Yi, L.Z. Chromatographic Fingerprints Combined with Chemometric Methods Reveal the Chemical Features of Authentic Radix Polygalae. J. AOAC Int. 2017, 100, 30–37. [Google Scholar] [CrossRef] [PubMed]
  21. Yi, L.Z.; Yuan, D.L.; Liang, Y.Z.; Xie, P.S.; Zhao, Y. Quality control and discrimination of pericarpium citri reticulatae and pericarpium citri reticulatae viride based on high-performance liquid chromatographic fingerprints and multivariate statistical analysis. Anal. Chim. Acta 2007, 588, 207–215. [Google Scholar] [CrossRef] [PubMed]
  22. Li, L.; Zhao, Y.Y.; Liu, W.Y.; Feng, F.; Xie, N. HPLC with quadrupole TOF-MS and chemometrics analysis for the characterization of Folium Turpiniae from different regions. J. Sep. Sci. 2013, 36, 2552–2561. [Google Scholar] [CrossRef] [PubMed]
  23. Sun, Y.; Guo, T.; Sui, Y.; Li, F.M. Fingerprint analysis of Flos Carthami by capillary electrophoresis. J. Chromatogr. B 2003, 792, 147–152. [Google Scholar] [CrossRef]
  24. Chaita, E.; Gikas, E.; Aligiannis, N. Integrated HPTLC-based Methodology for the Tracing of Bioactive Compounds in Herbal Extracts Employing Multivariate Chemometrics. A Case Study on Morus alba. Phytochem. Anal. 2017, 28, 125–131. [Google Scholar] [CrossRef] [PubMed]
  25. Smilde, A.; Westerhuis, J.A.; De, J. A framework for sequential multiblock component methods. J. Chemometr. 2003, 17, 323–337. [Google Scholar] [CrossRef]
  26. Reis, M.S. Network-induced supervised learning: Network-induced classification (NI-C) and network-induced regression (NI-R). AichE J. 2013, 59, 1570–1587. [Google Scholar] [CrossRef]
  27. Vapnik, V. The Nature of Statistical Learning Theory, 2nd ed.; Springer: New York, NY, USA, 2000; Volume 8, pp. 988–999. [Google Scholar]
  28. Gad, H.A.; El-Ahmady, S.H.; Abou-Shoer, M.I.; Al-Azizi, M.M. Application of chemometrics in authentication of herbal medicines: A review. Phytochem. Anal. 2013, 24, 1–24. [Google Scholar] [CrossRef] [PubMed]
  29. Kang, Q.; Ru, Q.; Liu, R.; Xu, L.; Liu, J.; Wang, Y.; Zhang, Y.; Li, H.; Zhang, Q.; Wu, Q. On-line monitoring the extract process of Fu-fang Shuanghua oral solution using near infrared spectroscopy and different PLS algorithms. Spectrochim. Acta A 2016, 152, 431–437. [Google Scholar] [CrossRef] [PubMed]
  30. Lozano, V.; Peña, A.; Durán, M.I.; Mansilla, A.E.; Escandar, G.M. Four-way multivariate calibration using ultra-fast high-performance liquid chromatography with fluorescence excitation–emission detection. Application to the direct analysis of chlorophylls a and b and pheophytins a and b in olive oils. Chemom. Intell. Lab. 2013, 125, 121–131. [Google Scholar] [CrossRef]
  31. Samadi, N.; Masoum, S.; Mehrara, B.; Hosseini, H. Application of linear multivariate calibration techniques to identify the peaks responsible for the antioxidant activity of Satureja hortensis L. and Oliveria decumbens Vent. essential oils by gas chromatography-mass spectrometry. J. Chromatogr. B 2015, 1001, 75–81. [Google Scholar] [CrossRef] [PubMed]
  32. Yi, L.Z.; Dong, N.P.; Shi, S.T.; Deng, B.C.; Yun, Y.H.; Yi, Z.B.; Zhang, Y. Metabolomic identification of novel biomarkers of nasopharyngeal carcinoma. RSC Adv. 2014, 4, 59094–59101. [Google Scholar] [CrossRef]
  33. Lam, K.Y.; Chen, J.; Lam, C.T.; Wu, Q.; Yao, P.; Dong, T.T.; Lin, H.; Tsim, K.W. Asarone from Acori Tatarinowii Rhizoma Potentiates the Nerve Growth Factor-Induced Neuronal Differentiation in Cultured PC12 Cells: A Signaling Mediated by Protein Kinase A. PLoS ONE 2016, 11, e0163337. [Google Scholar] [CrossRef] [PubMed]
  34. Mukherjee, P.K.; Kumar, V.; Mal, M.; Houghton, P.J. Scientific Validation of Ayurvedic Tradition from Natural Resources. Pharm. Biol. 2007, 45, 651–666. [Google Scholar] [CrossRef]
  35. Lubsandorzhieva, P.B.; Boldanova, N.B.; Dashinamzhilov, Z.B. Chemical Composition and In Vitro Antioxidant Activity of Essential Oil from a Hepatoprotective Herbal Mix. Pharm. Chem. J. 2013, 47, 58–61. [Google Scholar] [CrossRef]
  36. Varma, J.; Tripathi, M.; Ram, V.J.; Pandey, V.B.; Dubey, D.K. γ-Asarone- the fungitoxic principle of the essential oil of Caesulia axillaris. World J. Microbi. Biot. 2002, 18, 277–279. [Google Scholar] [CrossRef]
  37. Zhu, L.Y.; Lin, Z.; Zhan, L.B.; Lu, X.G.; Peng, J.Y.; Liang, L.N.; Yu, L.; Zheng, L.P.; Zhang, F.L.; Liu, Q.Q. The effects of Zibu Piyin Recipe components on scopolamine-induced learning and memory impairment in the mouse. J. Ethnopharmacol. 2013, 151, 576–582. [Google Scholar] [CrossRef] [PubMed]
  38. Chen, H.P.; Yang, K.; Zheng, L.S.; You, C.X.; Cai, Q.; Wang, C.F. Repellant and insecticidal activities of shyobunone and isoshyobunone derived from the essential oil of Acorus calamus rhizomes. Pharmacogn. Mag. 2015, 11, 675. [Google Scholar] [PubMed]
  39. Huang, Y.Z.; Hua, H.X.; Li, S.G.; Yang, C.J. Contact and fumigant toxicities of calamusenone isolated from Acorus gramineus rhizome against adults of Sitophilus zeamais and Rhizopertha dominica. Insect Sci. 2011, 18, 181–188. [Google Scholar] [CrossRef]
  40. Scur, M.C.; Pinto, F.G.; Pandini, J.A.; Costa, W.F.; Leite, C.W.; Temponi, L.G. Antimicrobial and antioxidant activity of essential oil and different plant extracts of Psidium cattleianum Sabine. Braz. J. Biol. 2016, 76, 1012–1015. [Google Scholar] [CrossRef] [PubMed]
  41. Chinese Pharmacopoeia Commission. Pharmacopoeia of the People’s Republic of China; China Medical Science Press: Beijing, China, 2015. [Google Scholar]
  42. Pérez-Meseguer, J.; Garza-Juárez, A.; Salazar-Aranda, R.; Salazar-Cavazos, M.L.; de La Torre Rodríguez, Y.C.; Rivas-Galindo, V.; Waksman de Torres, N. Development and Validation of an HPLC-DAD Analytical Procedure for Quality Control of Damiana (Turnera diffusa), Using an Antioxidant Marker Isolated from the Plant. J. AOAC Int. 2010, 93, 1161–1168. [Google Scholar] [PubMed]
  43. Wold, S.; Sjöström, M.; Eriksson, L. PLS-regression: A basic tool of chemometrics. Chemom. Intell. Lab. 2001, 58, 109–130. [Google Scholar] [CrossRef]
  44. Saptoro, A.; Tadé, M.O.; Vuthaluru, H. A Modified Kennard-Stone Algorithm for Optimal Division of Data for Developing Artificial Neural Network Models. Chem. Prod. Proc. Model. 2015, 7, 1–14. [Google Scholar] [CrossRef]
  45. Simpson, M.B. Near-Infrared Spectroscopy for Process Analytical Technology: Theory, Technology and Implementation. In Process Analytical Technology: Spectroscopic Tools and Implementation Strategies for the Chemical and Pharmaceutical Industries; Bakeev, K.A., Ed.; John Wiley & Sons, Ltd.: New York, NY, USA, 2010; Chapter 5; pp. 107–155. [Google Scholar]
  46. Chen, D.; Shao, X.; Hu, B.; Su, Q. Simultaneous wavelength selection and outlier detection in multivariate regression of near-infrared spectra. Anal. Sci. 2005, 21, 161–166. [Google Scholar] [CrossRef] [PubMed]
  47. Cao, D.S.; Liang, L.Z.; Xu, Q.Z.; Li, H.D.; Chen, X. A new strategy of outlier detection for QSAR/QSPR. J. Comput. Chem. 2009, 31, 592–602. [Google Scholar] [CrossRef] [PubMed]
Ijms 18 01342 g001 550
Figure 1. Representative gas chromatography–mass spectrometry (GC-MS) fingerprint of acorus tatarinowii rhizoma (ATR): (A) total ion chromatogram (TIC) of ATR at 3–13 min; (B)TIC of ATR at 13–24 min; (C) TIC of ATR at 24–35 min. Eighty volatile components were detected by GC-MS.
Figure 1. Representative gas chromatography–mass spectrometry (GC-MS) fingerprint of acorus tatarinowii rhizoma (ATR): (A) total ion chromatogram (TIC) of ATR at 3–13 min; (B)TIC of ATR at 13–24 min; (C) TIC of ATR at 24–35 min. Eighty volatile components were detected by GC-MS.
Ijms 18 01342 g001
Ijms 18 01342 g002 550
Figure 2. Distribution of the predicted mean and standard deviation values of 2,2-diohenyl-1-picryl-hydrazyl (DPPH) radical scavenging assay for 49 ATR samples by Monte-Carlo cross-validation (MCCV) method. A 2000-time Monte-Carlo sampling was conducted for the dataset of all samples (49 × 80).
Figure 2. Distribution of the predicted mean and standard deviation values of 2,2-diohenyl-1-picryl-hydrazyl (DPPH) radical scavenging assay for 49 ATR samples by Monte-Carlo cross-validation (MCCV) method. A 2000-time Monte-Carlo sampling was conducted for the dataset of all samples (49 × 80).
Ijms 18 01342 g002
Ijms 18 01342 g003 550
Figure 3. The partial least squares regression model between the radical scavenging activity and the volatile components: (A) Selection of the optimal latent variables by 10-fold cross validation. The first six latent variables were selected; (B) actual measured DPPH values versus their predicted values obtained by partial least squares regression model. The size of data set is 43 × 80. (▲) calibration set; (●) validation set.
Figure 3. The partial least squares regression model between the radical scavenging activity and the volatile components: (A) Selection of the optimal latent variables by 10-fold cross validation. The first six latent variables were selected; (B) actual measured DPPH values versus their predicted values obtained by partial least squares regression model. The size of data set is 43 × 80. (▲) calibration set; (●) validation set.
Ijms 18 01342 g003
Ijms 18 01342 g004 550
Figure 4. Screening of the key bioactive components: (A) The Q2 of the partial least squares regression models of different combinations of variables. The first one was the variable with the highest variable importance in projection (VIP) or regression coefficient (RC) value. The second combination was the first one plus the second one, then the first three, and so on. In this study, the number of variables changed from one to twenty; (B) RCs of the PLS regression model (43 × 80) for the 80 components; (C) VIP value of each component. Fifteen and eleven components were selected by RC and VIP, respectively. There are ten common components selected by the two methods. Components 1–16: 1, Estragole; 2, Methyleugenol; 3, cis-Methylisoeugenol; 4, Shyobunone; 5, Ledene; 6, Isoshyobunone; 7, δ-Cadinene; 8, Calacorene; 9, γ-Asarone; 10, β-Asarone; 11, cis-Calamenene; 12, Dehydroxy-isocalamendiol; 13, α-Cadinol; 14, α-Asarone; 15, Calamusenone; 16, Isocalamendiol.
Figure 4. Screening of the key bioactive components: (A) The Q2 of the partial least squares regression models of different combinations of variables. The first one was the variable with the highest variable importance in projection (VIP) or regression coefficient (RC) value. The second combination was the first one plus the second one, then the first three, and so on. In this study, the number of variables changed from one to twenty; (B) RCs of the PLS regression model (43 × 80) for the 80 components; (C) VIP value of each component. Fifteen and eleven components were selected by RC and VIP, respectively. There are ten common components selected by the two methods. Components 1–16: 1, Estragole; 2, Methyleugenol; 3, cis-Methylisoeugenol; 4, Shyobunone; 5, Ledene; 6, Isoshyobunone; 7, δ-Cadinene; 8, Calacorene; 9, γ-Asarone; 10, β-Asarone; 11, cis-Calamenene; 12, Dehydroxy-isocalamendiol; 13, α-Cadinol; 14, α-Asarone; 15, Calamusenone; 16, Isocalamendiol.
Ijms 18 01342 g004
Ijms 18 01342 g005 550
Figure 5. The result of standard deviation versus mean value for each sample calculated by Monte-Carlo cross-validation method. Samples in the red region are identified as normal, whereas the others are outliers.
Figure 5. The result of standard deviation versus mean value for each sample calculated by Monte-Carlo cross-validation method. Samples in the red region are identified as normal, whereas the others are outliers.
Ijms 18 01342 g005
Table
Table 1. Comparison of partial least squares regression models before and after variable selection.
Table 1. Comparison of partial least squares regression models before and after variable selection.
MatrixnLVR2Q2RMSECRMSEPRMSECV
49 × 80 a80.82840.78243.25973.22105.0261
43 × 80 b60.90900.81242.30843.09963.4109
43 × 15 c50.90690.79692.34403.17132.9716
43 × 11 d60.89550.82842.47452.96413.3196
43 × 10 e50.90500.79402.36793.19322.9927
a: the PLS regression model established by dataset of all samples; b: the PLS regression model established by dataset of samples after outlier elimination; c: the variables were selected by regression coefficients (RC); d: the variable were selected by variable importance in projection (VIP); e: the common variables selected by RC and VIP. nLV: number of latent variables; R2: determination coefficient for calibration set; Q2: determination coefficient for validation set; RMSEC: root mean square error of calibration; RMSEP: root mean square error of prediction (validation set); RMSECV: root mean square error of cross validation.

Share and Cite

MDPI and ACS Style

Liu, W.; Zhang, B.; Xin, Z.; Ren, D.; Yi, L. GC-MS Fingerprinting Combined with Chemometric Methods Reveals Key Bioactive Components in Acori Tatarinowii Rhizoma. Int. J. Mol. Sci. 2017, 18, 1342. https://doi.org/10.3390/ijms18071342

AMA Style

Liu W, Zhang B, Xin Z, Ren D, Yi L. GC-MS Fingerprinting Combined with Chemometric Methods Reveals Key Bioactive Components in Acori Tatarinowii Rhizoma. International Journal of Molecular Sciences. 2017; 18(7):1342. https://doi.org/10.3390/ijms18071342

Chicago/Turabian Style

Liu, Wenbin, Bingyang Zhang, Zhongquan Xin, Dabing Ren, and Lunzhao Yi. 2017. "GC-MS Fingerprinting Combined with Chemometric Methods Reveals Key Bioactive Components in Acori Tatarinowii Rhizoma" International Journal of Molecular Sciences 18, no. 7: 1342. https://doi.org/10.3390/ijms18071342

Note that from the first issue of 2016, this journal uses article numbers instead of page numbers. See further details here.

Article Metrics

Back to TopTop