Journal Description
Plants
Plants
is an international, scientific, peer-reviewed, open access journal on plant science published semimonthly online by MDPI. The Australian Society of Plant Scientists (ASPS), the Spanish Phytopathological Society (SEF), the Spanish Society of Plant Physiology (SEFV), the Spanish Society of Horticultural Sciences (SECH) and the Italian Society of Phytotherapy (S.I.Fit.) are affiliated with Plants and their members receive a discount on the article processing charges.
- Open Access— free for readers, with article processing charges (APC) paid by authors or their institutions.
- High Visibility: indexed within Scopus, SCIE (Web of Science), PubMed, PMC, PubAg, AGRIS, CAPlus / SciFinder, and other databases.
- Journal Rank: JCR - Q1 (Plant Sciences) / CiteScore - Q1 (Plant Science)
- Rapid Publication: manuscripts are peer-reviewed and a first decision is provided to authors approximately 15.3 days after submission; acceptance to publication is undertaken in 2.8 days (median values for papers published in this journal in the second half of 2023).
- Recognition of Reviewers: reviewers who provide timely, thorough peer-review reports receive vouchers entitling them to a discount on the APC of their next publication in any MDPI journal, in appreciation of the work done.
Impact Factor:
4.5 (2022);
5-Year Impact Factor:
4.8 (2022)
Latest Articles
Effect of Cluster-Zone Leaf Removal at Different Stages on Cabernet Sauvignon and Marselan (Vitis vinifera L.) Grape Phenolic and Volatile Profiles
Plants 2024, 13(11), 1543; https://doi.org/10.3390/plants13111543 (registering DOI) - 2 Jun 2024
Abstract
This study investigated the effect of leaf removal at three stages of grape development on the phenolic and volatile profiles of Cabernet Sauvignon and Marselan grapevines for two consecutive years in the Jieshi Mountain region, an area of eastern China with high summer
[...] Read more.
This study investigated the effect of leaf removal at three stages of grape development on the phenolic and volatile profiles of Cabernet Sauvignon and Marselan grapevines for two consecutive years in the Jieshi Mountain region, an area of eastern China with high summer rainfall. The results indicated that cluster-zone leaf removal generally reduced the titratable acidity of both varieties, but did not affect the total soluble solids of grape berries. Leaf-removal treatments increased the anthocyanin and flavonol content of berries in both varieties. However, in Cabernet Sauvignon, leaf removal negatively affected the norisoprenoid compounds, with a more pronounced impact observed when the leaf removal was conducted at an early stage. This negative effect may be related to a decrease in the levels of violaxanthin and neoxanthin, potential precursors of vitisprine and β-damascenone. In contrast, the removal of leaves had no effect on the norisoprenoid aroma of Marselan grapes.
Full article
(This article belongs to the Section Plant Physiology and Metabolism)
►
Show Figures
Open AccessArticle
The Spatial Shifts and Vulnerability Assessment of Ecological Niches under Climate Change Scenarios for Betula luminifera, a Fast-Growing Precious Tree in China
by
Xian-Ge Hu, Jiahui Chen, Qiaoyun Chen, Ying Yang, Yiheng Lin, Zilun Jin, Luqiong Sha, Erpei Lin, El-Kassaby Yousry and Huahong Huang
Plants 2024, 13(11), 1542; https://doi.org/10.3390/plants13111542 (registering DOI) - 2 Jun 2024
Abstract
The spatial shifts and vulnerability assessments of ecological niches for trees will offer fresh perspectives for sustainable development and preservation of forests, particularly within the framework of rapid climate change. Betula luminifera is a fast-growing native timber plantation species in China, but the
[...] Read more.
The spatial shifts and vulnerability assessments of ecological niches for trees will offer fresh perspectives for sustainable development and preservation of forests, particularly within the framework of rapid climate change. Betula luminifera is a fast-growing native timber plantation species in China, but the natural resources have been severely damaged. Here, a comprehensive habitat suitability model (including ten niche-based GIS modeling algorithms) was developed that integrates three types of environmental factors, namely, climatic, soil, and ultraviolet variables, to assess the species contemporary and future distribution of suitable habitats across China. Our results suggest that the habitats of B. luminifera generally occur in subtropical areas (about 1.52 × 106 km2). However, the growth of B. luminifera is profoundly shaped by the nuances of its local environment, the most reasonable niche spaces are only 1.15 × 106 km2 when limiting ecological factors (soil and ultraviolet) are considered, generally considered as the core production region. Furthermore, it is anticipated that species-suitable habitats will decrease by 10 and 8% with climate change in the 2050s and 2070s, respectively. Our study provided a clear understanding of species-suitable habitat distribution and identified the reasons why other niche spaces are unsuitable in the future, which can warn against artificial cultivation and conservation planning.
Full article
(This article belongs to the Special Issue Plant Responses to a Changing Climate: Ecological and Evolutionary Perspectives)
►▼
Show Figures
Figure 1
Open AccessArticle
Phytoremediation Potential of Flax Grown on Multimetal Contaminated Soils: A Field Experiment
by
Danai Kotoula, Eleni G. Papazoglou, Garifalia Economou, Panayiotis Trigas and Dimitris L. Bouranis
Plants 2024, 13(11), 1541; https://doi.org/10.3390/plants13111541 (registering DOI) - 2 Jun 2024
Abstract
The aim of this study was to assess the phytoremediation potential of fiber flax (Linum usitatissimatum L., var. Calista) cultivated in a soil contaminated with multiple metals, under real field conditions. A two-year (2022 and 2023) field experiment was conducted in a
[...] Read more.
The aim of this study was to assess the phytoremediation potential of fiber flax (Linum usitatissimatum L., var. Calista) cultivated in a soil contaminated with multiple metals, under real field conditions. A two-year (2022 and 2023) field experiment was conducted in a site contaminated with elevated concentrations of Cd, Ni, Cu, Pb, and Zn due to mining and metallurgical activities. Three different nitrogen fertilization levels were tested (N0: 0 kg N ha−1, N1: 30 kg N ha−1, N2: 60 kg N ha−1), and both spring and winter sowings were conducted. At full maturity, growth parameters and yields were measured. The phytoremediation potential of flax was assessed in terms of the metal concentrations in the above-ground biomass and of the metal uptake (i.e., the potential removal of the soil metals in g ha−1 and per year). Flax demonstrated a shorter growth cycle, with shorter and thicker plants and higher yields when sown in spring compared to winter sowing. Plant growth and productivity were not evidently influenced by additional nitrogen fertilization during plant growth. The cadmium bioaccumulation factor was 1.06, indicating that flax accumulates this metal. For Ni, Cu, Pb, and Zn, the corresponding values were 0.0, 0.04, 0.004, and 0.02, suggesting that this crop excludes these metals. The order of the higher uptake in plant tissues was as follows: Zn > Pb > Cd > Cu > Ni. In conclusion, flax demonstrated tolerance to heavy metals in the soil, effectively supporting soil restoration through cultivation. Additionally, flax showed potential as a cadmium accumulator while excluding nickel, copper, lead, and zinc.
Full article
(This article belongs to the Section Plant–Soil Interactions)
►▼
Show Figures
Figure 1
Open AccessArticle
Resilience of Canola to Plasmodiophora brassicae (Clubroot) Pathotype 3H under Different Resistance Genes and Initial Inoculum Levels
by
Rui Wen, Tao Song, Nazmoon Naher Tonu, Coreen Franke and Gary Peng
Plants 2024, 13(11), 1540; https://doi.org/10.3390/plants13111540 (registering DOI) - 2 Jun 2024
Abstract
In this study, we explored the resilience of a clubroot resistance (CR) stacking model against a field population of Plasmodiophora brassicae pathotype 3H. This contrasts with our earlier work, where stacking CRaM and Crr1rutb proved only moderately resistant to pathotype X. Canola varieties
[...] Read more.
In this study, we explored the resilience of a clubroot resistance (CR) stacking model against a field population of Plasmodiophora brassicae pathotype 3H. This contrasts with our earlier work, where stacking CRaM and Crr1rutb proved only moderately resistant to pathotype X. Canola varieties carrying Rcr1/Crr1rutb and Rcr1 + Crr1rutb were repeatedly exposed to 3H at low (1 × 104/g soil) and high (1 × 107/g soil) initial resting spore concentrations over five planting cycles under controlled environments to mimic intensive canola production. Initially, all resistant varieties showed strong resistance. However, there was a gradual decline in resistance over time for varieties carrying only a single CR gene, particularly with Crr1rutb alone and at the high inoculum level, where the disease severity index (DSI) increased from 9% to 39% over five planting cycles. This suggests the presence of virulent pathotypes at initially low levels in the 3H inoculum. In contrast, the variety with stacked CR genes remained resilient, with DSI staying below 3% throughout, even at the high inoculum level. Furthermore, the use of resistant varieties, carrying either a single or stacked CR genes, reduced the total resting spore numbers in soil over time, while the inoculum level either increased or remained high in soils where susceptible Westar was continuously grown. Our study demonstrates greater resistance resilience for stacking Rcr1 and Crr1rutb against the field population of 3H. Additionally, the results suggest that resistance may persist even longer in fields with lower levels of inoculum, highlighting the value of extended crop rotation (reducing inoculum) alongside strategic CR-gene deployment to maximize resistance resilience.
Full article
(This article belongs to the Special Issue Plant-Associated Microorganisms: Exploring Their Beneficial and Harmful Impacts on Plant Production in Response to a Changing Climate)
►▼
Show Figures
Figure 1
Open AccessArticle
Transgenic Soybean for Production of Thermostable α-Amylase
by
Zhenyan Cao, Ye Jiang, Jiajie Li, Ting Zheng, Chaoyang Lin and Zhicheng Shen
Plants 2024, 13(11), 1539; https://doi.org/10.3390/plants13111539 (registering DOI) - 2 Jun 2024
Abstract
Alpha-amylases are crucial hydrolase enzymes which have been widely used in food, feed, fermentation, and pharmaceutical industries. Methods for low-cost production of α-amylases are highly desirable. Soybean seed, functioning as a bioreactor, offers an excellent platform for the mass production of recombinant proteins
[...] Read more.
Alpha-amylases are crucial hydrolase enzymes which have been widely used in food, feed, fermentation, and pharmaceutical industries. Methods for low-cost production of α-amylases are highly desirable. Soybean seed, functioning as a bioreactor, offers an excellent platform for the mass production of recombinant proteins for its ability to synthesize substantial quantities of proteins. In this study, we generated and characterized transgenic soybeans expressing the α-amylase AmyS from Bacillus stearothermophilus. The α-amylase expression cassettes were constructed for seed specific expression by utilizing the promoters of three different soybean storage peptides and transformed into soybean via Agrobacterium-mediated transformation. The event with the highest amylase activity reached 601 U/mg of seed flour (one unit is defined as the amount of enzyme that generates 1 micromole reducing ends per min from starch at 65 °C in pH 5.5 sodium acetate buffer). The optimum pH, optimum temperature, and the enzymatic kinetics of the soybean expressed enzyme are similar to that of the E. coli expressed enzyme. However, the soybean expressed α-amylase is glycosylated, exhibiting enhanced thermostability and storage stability. Soybean AmyS retains over 80% activity after 100 min at 75 °C, and the transgenic seeds exhibit no significant activity loss after one year of storage at room temperature. The accumulated AmyS in the transgenic seeds represents approximately 15% of the total seed protein, or about 4% of the dry seed weight. The specific activity of the transgenic soybean seed flour is comparable to many commercial α-amylase enzyme products in current markets, suggesting that the soybean flour may be directly used for various applications without the need for extraction and purification.
Full article
(This article belongs to the Topic Genetic Engineering in Agriculture)
►▼
Show Figures
Figure 1
Open AccessArticle
Catha edulis Leaves: Morphological Characterization and Anti-Inflammatory Properties in an In Vitro Model of Gastritis
by
Andrea Magnavacca, Claudia Giuliani, Gabriella Roda, Stefano Piazza, Giulia Martinelli, Carola Pozzoli, Nicole Maranta, Alessio Papini, Martina Bottoni, Eleonora Casagni, Michele Dei Cas, Gelsomina Fico, Mario Dell’Agli and Enrico Sangiovanni
Plants 2024, 13(11), 1538; https://doi.org/10.3390/plants13111538 (registering DOI) - 1 Jun 2024
Abstract
Khat leaves, indigenous to eastern Africa, have been chewed for centuries for their stimulant effects, attributed to alkaloids such as cathinone and cathine. Although associated with gastric disorders like gastritis and gastro-oesophageal reflux disease, the underlying molecular mechanisms remain unclear. This study aimed
[...] Read more.
Khat leaves, indigenous to eastern Africa, have been chewed for centuries for their stimulant effects, attributed to alkaloids such as cathinone and cathine. Although associated with gastric disorders like gastritis and gastro-oesophageal reflux disease, the underlying molecular mechanisms remain unclear. This study aimed to examine the morpho-anatomy of khat leaves using light microscopy and histochemistry and to assess the effects of leaf extracts and alkaloids on human gastric epithelial cells (GES-1). The study identified specific cells in the palisade–spongy transition zone as storage sites for psychoactive alkaloids. Leaf extracts were prepared by mimicking the chewing process, including a prolonged salivary phase followed by a gastric phase. Cytotoxicity and cell viability were evaluated using LDH and MTT assays, respectively. Additionally, the impact on IL-8 secretion, a key chemokine in gastric inflammation, was analysed under normal and TNF-α-stimulated conditions. The results showed no increase in cytotoxicity up to 250 µg/mL. However, there was a significant decrease in cell metabolism and a reduction in both basal and TNF-α-induced IL-8 secretion, but cathinone and cathine were inactive. These findings suggest that khat may not directly cause the gastric issues reported in the literature, which would rather be attributed to other confounding factors, highlighting the need for further research to clarify its biological impacts.
Full article
(This article belongs to the Section Phytochemistry)
►▼
Show Figures
Figure 1
Open AccessArticle
Anthropogenic Disturbances Influenced the Island Effect on Both Taxonomic and Phylogenetic Diversity on Subtropical Islands, Pingtan, China
by
Bo Chen, Denghong Xue, Zhihui Li, Lan Jiang, Yu Tian, Jing Zhu, Xing Jin, Jingjing Yang, Chaofa Huang, Jurong Liu, Hai Liu, Jinfu Liu and Zhongsheng He
Plants 2024, 13(11), 1537; https://doi.org/10.3390/plants13111537 (registering DOI) - 1 Jun 2024
Abstract
The investigation of taxonomic diversity within island plant communities stands as a central focus in the field of island biogeography. Phylogenetic diversity is crucial for unraveling the evolutionary history, ecological functions, and species combinations within island plant communities. Island effects (area and isolation
[...] Read more.
The investigation of taxonomic diversity within island plant communities stands as a central focus in the field of island biogeography. Phylogenetic diversity is crucial for unraveling the evolutionary history, ecological functions, and species combinations within island plant communities. Island effects (area and isolation effect) may shape species distribution patterns, habitat heterogeneity affects habitat diversity, and anthropogenic disturbances can lead to species extinction and habitat destruction, thus impacting both species diversity and phylogenetic diversity. To investigate how taxonomic and phylogenetic diversity in island natural plant communities respond to island effects, habitat heterogeneity, and anthropogenic disturbances, we took the main island of Haitan (a land-bridge island) and nine surrounding islands (oceanic islands) of varying sizes as the subjects of our study on the Pingtan islands. We aim to elucidate the influence of island effects, habitat heterogeneity, and anthropogenic disturbances on taxonomic and phylogenetic diversity. The results showed that, (1) Both the taxonomic and phylogenetic diversity of plants on the Pingtan islands followed the island area effect, indicating that as the island area increases, both taxonomic and phylogenetic diversity also increase. (2) Island effects and habitat heterogeneity were found to enhance taxonomic and phylogenetic diversity, whereas anthropogenic disturbances were associated with a decrease in both taxonomic and phylogenetic diversity. Furthermore, the synergistic influence of island effects, habitat heterogeneity, and anthropogenic disturbances collectively exerted a negative impact on both taxonomic and phylogenetic diversity. (3) The contribution of explanatory variables of anthropogenic disturbances for taxonomic and phylogenetic diversity was higher than that of island effects and habitat heterogeneity. Additionally, the contribution of the explanatory variables under the combined influence of island effects, habitat heterogeneity, and anthropogenic disturbances is higher than that of the individual variables for island effects and habitat heterogeneity. These findings suggest that anthropogenic disturbances emerged as the dominant factors influencing both taxonomic and phylogenetic diversity. These findings demonstrate the intricate interplay between island effects, habitat heterogeneity, and anthropogenic disturbances, highlighting their combined influence on both taxonomic and phylogenetic diversity on island.
Full article
(This article belongs to the Section Plant Ecology)
►▼
Show Figures
Figure 1
Open AccessArticle
UV-B Radiation Disrupts Membrane Lipid Organization and Suppresses Protein Mobility of GmNARK in Arabidopsis
by
Qiulin Liu, Tianyu Wang, Meiyu Ke, Chongzhen Qian, Jiejie Li, Xi Huang, Zhen Gao, Xu Chen and Tianli Tu
Plants 2024, 13(11), 1536; https://doi.org/10.3390/plants13111536 (registering DOI) - 1 Jun 2024
Abstract
While it is well known that plants interpret UV-B as an environmental cue and a potential stressor influencing their growth and development, the specific effects of UV-B-induced oxidative stress on the dynamics of membrane lipids and proteins remain underexplored. Here, we demonstrate that
[...] Read more.
While it is well known that plants interpret UV-B as an environmental cue and a potential stressor influencing their growth and development, the specific effects of UV-B-induced oxidative stress on the dynamics of membrane lipids and proteins remain underexplored. Here, we demonstrate that UV-B exposure notably increases the formation of ordered lipid domains on the plasma membrane (PM) and significantly alters the behavior of the Glycine max nodule autoregulation receptor kinase (GmNARK) protein in Arabidopsis leaves. The GmNARK protein was located on the PM and accumulated as small particles in the cytoplasm. We found that UV-B irradiation interrupted the lateral diffusion of GmNARK proteins on the PM. Furthermore, UV-B light decreases the efficiency of surface molecule internalization by clathrin-mediated endocytosis (CME). In brief, UV-B irradiation increased the proportion of the ordered lipid phase and disrupted clathrin-dependent endocytosis; thus, the endocytic trafficking and lateral mobility of GmNARK protein on the plasma membrane are crucial for nodule formation tuning. Our results revealed a novel role of low-intensity UV-B stress in altering the organization of the plasma membrane and the dynamics of membrane-associated proteins.
Full article
(This article belongs to the Topic Plant Responses to Environmental Stress)
►▼
Show Figures
Figure 1
Open AccessArticle
Identification of Multiple Diseases in Apple Leaf Based on Optimized Lightweight Convolutional Neural Network
by
Bin Wang, Hua Yang, Shujuan Zhang and Lili Li
Plants 2024, 13(11), 1535; https://doi.org/10.3390/plants13111535 (registering DOI) - 1 Jun 2024
Abstract
In this study, our aim is to find an effective method to solve the problem of disease similarity caused by multiple diseases occurring on the same leaf. This study proposes the use of an optimized RegNet model to identify seven common apple leaf
[...] Read more.
In this study, our aim is to find an effective method to solve the problem of disease similarity caused by multiple diseases occurring on the same leaf. This study proposes the use of an optimized RegNet model to identify seven common apple leaf diseases. We conducted comparisons and analyses on the impact of various factors, such as training methods, data expansion methods, optimizer selection, image background, and other factors, on model performance. The findings suggest that utilizing offline expansion and transfer learning to fine-tune all layer parameters can enhance the model’s classification performance, while complex image backgrounds significantly influence model performance. Additionally, the optimized RegNet network model demonstrates good generalization ability for both datasets, achieving testing accuracies of 93.85% and 99.23%, respectively. These results highlight the potential of the optimized RegNet network model to achieve high-precision identification of different diseases on the same apple leaf under complex field backgrounds. This will be of great significance for intelligent disease identification in apple orchards in the future.
Full article
(This article belongs to the Special Issue Plant Diseases and Sustainable Agriculture)
►▼
Show Figures
Figure 1
Open AccessReview
Reducing Heavy Metal Contamination in Soil and Water Using Phytoremediation
by
Yryszhan Zhakypbek, Bekzhan D. Kossalbayev, Ayaz M. Belkozhayev, Toktar Murat, Serik Tursbekov, Elaman Abdalimov, Pavel Pashkovskiy, Vladimir Kreslavski, Vladimir Kuznetsov and Suleyman I. Allakhverdiev
Plants 2024, 13(11), 1534; https://doi.org/10.3390/plants13111534 (registering DOI) - 1 Jun 2024
Abstract
The increase in industrialization has led to an exponential increase in heavy metal (HM) soil contamination, which poses a serious threat to public health and ecosystem stability. This review emphasizes the urgent need to develop innovative technologies for the environmental remediation of intensive
[...] Read more.
The increase in industrialization has led to an exponential increase in heavy metal (HM) soil contamination, which poses a serious threat to public health and ecosystem stability. This review emphasizes the urgent need to develop innovative technologies for the environmental remediation of intensive anthropogenic pollution. Phytoremediation is a sustainable and cost-effective approach for the detoxification of contaminated soils using various plant species. This review discusses in detail the basic principles of phytoremediation and emphasizes its ecological advantages over other methods for cleaning contaminated areas and its technical viability. Much attention has been given to the selection of hyperaccumulator plants for phytoremediation that can grow on heavy metal-contaminated soils, and the biochemical mechanisms that allow these plants to isolate, detoxify, and accumulate heavy metals are discussed in detail. The novelty of our study lies in reviewing the mechanisms of plant–microorganism interactions that greatly enhance the efficiency of phytoremediation as well as in discussing genetic modifications that could revolutionize the cleanup of contaminated soils. Moreover, this manuscript discusses potential applications of phytoremediation beyond soil detoxification, including its role in bioenergy production and biodiversity restoration in degraded habitats. This review concludes by listing the serious problems that result from anthropogenic environmental pollution that future generations still need to overcome and suggests promising research directions in which the integration of nano- and biotechnology will play an important role in enhancing the effectiveness of phytoremediation. These contributions are critical for environmental scientists, policy makers, and practitioners seeking to utilize phytoremediation to maintain the ecological stability of the environment and its restoration.
Full article
(This article belongs to the Section Plant–Soil Interactions)
►▼
Show Figures
Figure 1
Open AccessArticle
Genome-Wide Association Study Identifies Quantitative Trait Loci and Candidate Genes Involved in Deep-Sowing Tolerance in Maize (Zea mays L.)
by
Jin Yang, Zhou Liu, Yanbo Liu, Xiujun Fan, Lei Gao, Yangping Li, Yufeng Hu, Kun Hu and Yubi Huang
Plants 2024, 13(11), 1533; https://doi.org/10.3390/plants13111533 (registering DOI) - 1 Jun 2024
Abstract
Deep sowing is an efficient strategy for maize to ensure the seedling emergence rate under adverse conditions such as drought or low temperatures. However, the genetic basis of deep-sowing tolerance-related traits in maize remains largely unknown. In this study, we performed a genome-wide
[...] Read more.
Deep sowing is an efficient strategy for maize to ensure the seedling emergence rate under adverse conditions such as drought or low temperatures. However, the genetic basis of deep-sowing tolerance-related traits in maize remains largely unknown. In this study, we performed a genome-wide association study on traits related to deep-sowing tolerance, including mesocotyl length (ML), coleoptile length (CL), plumule length (PL), shoot length (SL), and primary root length (PRL), using 255 maize inbred lines grown in three different environments. We identified 23, 6, 4, and 4 quantitative trait loci (QTLs) associated with ML, CL, PL, and SL, respectively. By analyzing candidate genes within these QTLs, we found a γ-tubulin-containing complex protein, ZmGCP2, which was significantly associated with ML, PL, and SL. Loss of function of ZmGCP2 resulted in decreased PL, possibly by affecting the cell elongation, thus affecting SL. Additionally, we identified superior haplotypes and allelic variations of ZmGCP2 with a longer PL and SL, which may be useful for breeding varieties with deep-sowing tolerance to improve maize cultivation.
Full article
(This article belongs to the Special Issue Crop Genetics and Breeding)
►▼
Show Figures
Figure 1
Open AccessArticle
Phospholipid Signaling in Crop Plants: A Field to Explore
by
Lucas Amokrane, Igor Pokotylo, Sébastien Acket, Amélie Ducloy, Adrian Troncoso-Ponce, Jean-Luc Cacas and Eric Ruelland
Plants 2024, 13(11), 1532; https://doi.org/10.3390/plants13111532 - 31 May 2024
Abstract
In plant models such as Arabidopsis thaliana, phosphatidic acid (PA), a key molecule of lipid signaling, was shown not only to be involved in stress responses, but also in plant development and nutrition. In this article, we highlight lipid signaling existing in
[...] Read more.
In plant models such as Arabidopsis thaliana, phosphatidic acid (PA), a key molecule of lipid signaling, was shown not only to be involved in stress responses, but also in plant development and nutrition. In this article, we highlight lipid signaling existing in crop species. Based on open access databases, we update the list of sequences encoding phospholipases D, phosphoinositide-dependent phospholipases C, and diacylglycerol-kinases, enzymes that lead to the production of PA. We show that structural features of these enzymes from model plants are conserved in equivalent proteins from selected crop species. We then present an in-depth discussion of the structural characteristics of these proteins before focusing on PA binding proteins. For the purpose of this article, we consider RESPIRATORY BURST OXIDASE HOMOLOGUEs (RBOHs), the most documented PA target proteins. Finally, we discuss pioneering experiments that show, by different approaches such as monitoring of gene expression, use of pharmacological agents, ectopic over-expression of genes, and the creation of silenced mutants, that lipid signaling plays major roles in crop species. Finally, we present major open questions that require attention since we have only a perception of the peak of the iceberg when it comes to the exciting field of phospholipid signaling in plants.
Full article
(This article belongs to the Special Issue Signal Transduction in Plants in Response to Environmental Stresses)
Open AccessReview
The Medicinal Species of the Lycium Genus (Goji Berries) in East Asia: A Review of Its Effect on Cell Signal Transduction Pathways
by
Chenyu Jiang, Ziyu Chen, Weilin Liao, Ren Zhang, Geer Chen, Lijuan Ma and Haijie Yu
Plants 2024, 13(11), 1531; https://doi.org/10.3390/plants13111531 - 31 May 2024
Abstract
Natural plants contain numerous chemical compounds that are beneficial to human health. The berries from the Lycium genus are widely consumed and are highly nutritious. Moreover, their chemical constituents have attracted attention for their health-promoting properties. In East Asia, there are three varieties
[...] Read more.
Natural plants contain numerous chemical compounds that are beneficial to human health. The berries from the Lycium genus are widely consumed and are highly nutritious. Moreover, their chemical constituents have attracted attention for their health-promoting properties. In East Asia, there are three varieties of the Lycium genus (Lycium barbarum L., Lycium chinense Miller, and L. ruthenicum Murray) that possess medicinal value and are commonly used for treating chronic diseases and improving metabolic disorders. These varieties are locally referred to as “red Goji berries” or “black Goji berries” due to their distinct colors, and they differ in their chemical compositions, primarily in terms of carotenoid and anthocyanin content. The pharmacological functions of these berries include anti-aging, antioxidant, anti-inflammatory, and anti-exercise fatigue effects. This review aims to analyze previous and recent studies on the active ingredients and pharmacological activities of these Lycium varieties, elucidating their signaling pathways and assessing their impact on the gut microbiota. Furthermore, the potential prospects for using these active ingredients in the treatment of COVID-19 are evaluated. This review explores the potential targets of these Lycium varieties in the treatment of relevant diseases, highlighting their potential value in drug development.
Full article
(This article belongs to the Special Issue Exploring Plant-Derived Medicinal Compounds: From Traditional Wisdom to Targeted Drug Discovery)
►▼
Show Figures
Graphical abstract
Open AccessArticle
Comprehensive Transcriptome and Proteome Analyses Reveal the Drought Responsive Gene Network in Potato Roots
by
Tianyuan Qin, Yihao Wang, Zhuanfang Pu, Ningfan Shi, Richard Dormatey, Huiqiong Wang and Chao Sun
Plants 2024, 13(11), 1530; https://doi.org/10.3390/plants13111530 - 31 May 2024
Abstract
The root system plays a decisive role in the growth and development of plants. The water requirement of a root system depends strongly on the plant species. Potatoes are an important food and vegetable crop grown worldwide, especially under irrigation in arid and
[...] Read more.
The root system plays a decisive role in the growth and development of plants. The water requirement of a root system depends strongly on the plant species. Potatoes are an important food and vegetable crop grown worldwide, especially under irrigation in arid and semi-arid regions. However, the expected impact of global warming on potato yields calls for an investigation of genes related to root development and drought resistance signaling pathways in potatoes. In this study, we investigated the molecular mechanisms of different drought-tolerant potato root systems in response to drought stress under controlled water conditions, using potato as a model. We analyzed the transcriptome and proteome of the drought-sensitive potato cultivar Atlantic (Atl) and the drought-tolerant cultivar Qingshu 9 (Q9) under normal irrigation (CK) and weekly drought stress (D). The results showed that a total of 14,113 differentially expressed genes (DEGs) and 5596 differentially expressed proteins (DEPs) were identified in the cultivars. A heat map analysis of DEGs and DEPs showed that the same genes and proteins in Atl and Q9 exhibited different expression patterns under drought stress. Weighted gene correlation network analysis (WGCNA) showed that in Atl, Gene Ontology (GO) terms and Kyoto Encyclopedia of Genes and Genomes (KEGG)-enriched pathways were related to pyruvate metabolism and glycolysis, as well as cellular signaling and ion transmembrane transporter protein activity. However, GO terms and KEGG-enriched pathways related to phytohormone signaling and the tricarboxylic acid cycle were predominantly enriched in Q9. The present study provides a unique genetic resource to effectively explore the functional genes and uncover the molecular regulatory mechanism of the potato root system in response to drought stress.
Full article
(This article belongs to the Topic Tolerance to Drought and Salt Stress in Plants, 2nd volume)
Open AccessArticle
Thriving under Salinity: Growth, Ecophysiology and Proteomic Insights into the Tolerance Mechanisms of Obligate Halophyte Suaeda fruticosa
by
Bilquees Gul, Abdul Hameed, Muhammad Zaheer Ahmed, Tabassum Hussain, Sarwat Ghulam Rasool and Brent L. Nielsen
Plants 2024, 13(11), 1529; https://doi.org/10.3390/plants13111529 - 31 May 2024
Abstract
Studies on obligate halophytes combining eco-physiological techniques and proteomic analysis are crucial for understanding salinity tolerance mechanisms but are limited. We thus examined growth, water relations, ion homeostasis, photosynthesis, oxidative stress mitigation and proteomic responses of an obligate halophyte Suaeda fruticosa to increasing
[...] Read more.
Studies on obligate halophytes combining eco-physiological techniques and proteomic analysis are crucial for understanding salinity tolerance mechanisms but are limited. We thus examined growth, water relations, ion homeostasis, photosynthesis, oxidative stress mitigation and proteomic responses of an obligate halophyte Suaeda fruticosa to increasing salinity under semi-hydroponic culture. Most biomass parameters increased under moderate (300 mmol L−1 of NaCl) salinity, while high (900 mmol L−1 of NaCl) salinity caused some reduction in biomass parameters. Under moderate salinity, plants showed effective osmotic adjustment with concomitant accumulation of Na+ in both roots and leaves. Accumulation of Na+ did not accompany nutrient deficiency, damage to photosynthetic machinery and oxidative damage in plants treated with 300 mmol L−1 of NaCl. Under high salinity, plants showed further decline in sap osmotic potential with higher Na+ accumulation that did not coincide with a decline in relative water content, Fv/Fm, and oxidative damage markers (H2O2 and MDA). There were 22, 54 and 7 proteins in optimal salinity and 29, 46 and 8 proteins in high salinity treatment that were up-regulated, down-regulated or exhibited no change, respectively, as compared to control plants. These data indicate that biomass reduction in S. fruticosa at high salinity might result primarily from increased energetic cost rather than ionic toxicity.
Full article
(This article belongs to the Special Issue Wild Halophytes: Tools for Understanding Salt Tolerance Mechanisms of Plants and for Adapting Agriculture to Climate Change II)
Open AccessReview
Nanoparticles as a Tool for Alleviating Plant Stress: Mechanisms, Implications, and Challenges
by
Ankita Kumari, Ashish Kumar Gupta, Shivika Sharma, Vikash S. Jadon, Vikas Sharma, Se Chul Chun and Iyyakkannu Sivanesan
Plants 2024, 13(11), 1528; https://doi.org/10.3390/plants13111528 - 31 May 2024
Abstract
Plants, being sessile, are continuously exposed to varietal environmental stressors, which consequently induce various bio-physiological changes in plants that hinder their growth and development. Oxidative stress is one of the undesirable consequences in plants triggered due to imbalance in their antioxidant defense system.
[...] Read more.
Plants, being sessile, are continuously exposed to varietal environmental stressors, which consequently induce various bio-physiological changes in plants that hinder their growth and development. Oxidative stress is one of the undesirable consequences in plants triggered due to imbalance in their antioxidant defense system. Biochemical studies suggest that nanoparticles are known to affect the antioxidant system, photosynthesis, and DNA expression in plants. In addition, they are known to boost the capacity of antioxidant systems, thereby contributing to the tolerance of plants to oxidative stress. This review study attempts to present the overview of the role of nanoparticles in plant growth and development, especially emphasizing their role as antioxidants. Furthermore, the review delves into the intricate connections between nanoparticles and plant signaling pathways, highlighting their influence on gene expression and stress-responsive mechanisms. Finally, the implications of nanoparticle-assisted antioxidant strategies in sustainable agriculture, considering their potential to enhance crop yield, stress tolerance, and overall plant resilience, are discussed.
Full article
(This article belongs to the Special Issue The Impact of Nanomaterials on Plant Growth, Development and Metabolism (Volume II))
Open AccessArticle
Effects of Ratoon Rice Cropping Patterns on Greenhouse Gas Emissions and Yield in Double-Season Rice Regions
by
Jinbiao Xiang, Liusheng Zhong, Zhixiong Yuan, Liqin Liang, Zhangzhen Yang, Yanmei Xiao, Zhiqiang Fu, Pan Long, Cheng Huang and Ying Xu
Plants 2024, 13(11), 1527; https://doi.org/10.3390/plants13111527 - 31 May 2024
Abstract
The ratoon rice cropping pattern is an alternative to the double-season rice cropping pattern in central China due to its comparable annual yield and relatively lower cost and labor requirements. However, the impact of the ratoon rice cropping pattern on greenhouse gas (GHG)
[...] Read more.
The ratoon rice cropping pattern is an alternative to the double-season rice cropping pattern in central China due to its comparable annual yield and relatively lower cost and labor requirements. However, the impact of the ratoon rice cropping pattern on greenhouse gas (GHG) emissions and yields in the double-season rice region requires further investigation. Here, we compared two cropping patterns, fallow-double season rice (DR) and fallow-ratoon rice (RR), by using two early-season rice varieties (ZJZ17, LY287) and two late-season rice varieties (WY103, TY390) for DR, and two ratoon rice varieties (YLY911, LY6326) for RR. The six varieties constituted four treatments, including DR1 (ZJZ17 + WY103), DR2 (LY287 + TY390), RR1 (YLY911), and RR2 (LY6326). The experimental results showed that conversion from DR to RR cropping pattern significantly altered the GHG emissions, global warming potential (GWP), and GWP per unit yield (yield-scaled GWP). Compared with DR, the RR cropping pattern significantly increased cumulative methane (CH4), nitrous oxide (N2O), and carbon dioxide (CO2) emissions by 65.73%, 30.56%, and 47.13%, respectively, in the first cropping season. Conversely, in the second cropping season, the RR cropping pattern effectively reduced cumulative CH4, N2O, and CO2 emissions by 79.86%, 27.18%, and 30.31%, respectively. RR led to significantly lower annual cumulative CH4 emissions, but no significant difference in cumulative annual N2O and CO2 emissions compared with DR. In total, the RR cropping pattern reduced the annual GWP by 7.38% and the annual yield-scaled GWP by 2.48% when compared to the DR cropping pattern. Rice variety also showed certain effects on the yields and GHG emissions in different RR cropping patterns. Compared with RR1, RR2 significantly increased annual yield while decreasing annual GWP and annual yield-scaled GWP. In conclusion, the LY6326 RR cropping pattern may be a highly promising strategy to simultaneously reduce GWP and maintain high grain yield in double-season rice regions in central China.
Full article
(This article belongs to the Special Issue Key Technologies and Adaptive Cultivation of Food Crops to Cope with Climate Change)
►▼
Show Figures
Figure 1
Open AccessArticle
Responses of Soil Carbon and Microbial Residues to Degradation in Moso Bamboo Forest
by
Shuhan Liu, Xuekun Cheng, Yulong Lv, Yufeng Zhou, Guomo Zhou and Yongjun Shi
Plants 2024, 13(11), 1526; https://doi.org/10.3390/plants13111526 - 31 May 2024
Abstract
Moso bamboo (Phyllostachys heterocycla cv. Pubescens) is known for its high capacity to sequester atmospheric carbon (C), which has a unique role to play in the fight against global warming. However, due to rising labor costs and falling bamboo prices, many
[...] Read more.
Moso bamboo (Phyllostachys heterocycla cv. Pubescens) is known for its high capacity to sequester atmospheric carbon (C), which has a unique role to play in the fight against global warming. However, due to rising labor costs and falling bamboo prices, many Moso bamboo forests are shifting to an extensive management model without fertilization, resulting in gradual degradation of Moso bamboo forests. However, many Moso bamboo forests are being degraded due to rising labor costs and declining bamboo timber prices. To delineate the effect of degradation on soil microbial carbon sequestration, we instituted a rigorous analysis of Moso bamboo forests subjected to different degradation durations, namely: continuous management (CK), 5 years of degradation (D-5), and 10 years of degradation (D-10). Our inquiry encompassed soil strata at 0–20 cm and 20–40 cm, scrutinizing alterations in soil organic carbon (SOC), water-soluble carbon (WSOC), microbial carbon (MBC) and microbial residues. We discerned a positive correlation between degradation and augmented levels of SOC, WSOC, and MBC across both strata. Furthermore, degradation escalated concentrations of specific soil amino sugars and microbial residues. Intriguingly, extended degradation diminished the proportional contribution of microbial residuals to SOC, implying a possible decline in microbial activity longitudinally. These findings offer a detailed insight into microbial C processes within degraded bamboo ecosystems.
Full article
(This article belongs to the Special Issue Carbon Sequestration and Stabilization in Forest and Bamboo Ecosystems)
Open AccessReview
Responses of Soil C, N, P and Enzyme Activities to Biological Soil Crusts in China: A Meta-Analysis
by
Zhi Yang, Yong Yuan, Jinjin Guo, Jinxi Li, Jianhua Li, Hu Yu, Wen Zeng, Yinhong Huang, Liyun Yin and Fulian Li
Plants 2024, 13(11), 1525; https://doi.org/10.3390/plants13111525 - 31 May 2024
Abstract
Biological soil crusts (BSCs) are often referred to as the “living skin” of arid regions worldwide. Yet, the combined impact of BSCs on soil carbon (C), nitrogen (N), phosphorus (P), and enzyme activities remains not fully understood. This study identified, screened and reviewed
[...] Read more.
Biological soil crusts (BSCs) are often referred to as the “living skin” of arid regions worldwide. Yet, the combined impact of BSCs on soil carbon (C), nitrogen (N), phosphorus (P), and enzyme activities remains not fully understood. This study identified, screened and reviewed 71 out of 2856 literature sources to assess the responses of soil C, N, P and enzyme activity to BSCs through a meta-analysis. The results indicated that BSC presence significantly increased soil C, N, P and soil enzyme activity, and this increasing effect was significantly influenced by the types of BSCs. Results from the overall effect showed that soil organic carbon (SOC), total nitrogen (TN), available nitrogen (AN), total phosphorus (TP), and available phosphorus (AP) increased by 107.88%, 84.52%, 45.43%, 27.46%, and 54.71%, respectively, and four soil enzyme activities (Alkaline Phosphatase, Cellulase, Sucrase, and Urease) increased by 93.65–229.27%. The highest increases in SOC, TN and AN content occurred in the soil covered with lichen crusts and moss crusts, and significant increases in Alkaline Phosphatase and Cellulase were observed in the soil covered with moss crusts and mixed crusts, suggesting that moss crusts can synergistically enhance soil C and N pool and enzyme activity. Additionally, variations in soil C, N, P content, and enzyme activity were observed under different environmental settings, with more pronounced improvements seen in coarse and medium-textured soils compared to fine-textured soils, particularly at a depth of 5 cm from the soil surface. BSCs in desert ecosystems showed more significant increases in SOC, TN, AN, and Alkaline Phosphatase compared to forest and grassland ecosystems. Specifically, BSCs at low altitude (≤500 m) with an annual average rainfall of 0–400 mm and an annual average temperature ≤ 10 °C were the most conducive to improving soil C, N, and P levels. Our results highlight the role of BSCs and their type in increasing soil C, N, P and enzyme activities, with these effects significantly impacted by soil texture, ecosystem type, and climatic conditions. The implications of these findings are crucial for soil enhancement, ecosystem revitalization, windbreak, and sand stabilization efforts in the drylands of China.
Full article
(This article belongs to the Section Plant–Soil Interactions)
Open AccessArticle
Transcriptomic Analysis Reveals the Flavonoid Biosynthesis Pathway Involved in Rhizome Development in Polygonatum cyrtonema Hua
by
Kui Wan, Jingjie Ban, Fengjie Yang, Xueying Zhang, Xiaoling Huang, Yanqiu Wang, Zihao Zhang, Zhongxiong Lai, Yukun Chen and Yuling Lin
Plants 2024, 13(11), 1524; https://doi.org/10.3390/plants13111524 - 31 May 2024
Abstract
Abstract: Polygonatum cyrtonema Hua (P. cyrtonema) rhizomes are rich in flavonoids and other secondary metabolites, exhibiting remarkable antioxidant, anti-tumor, and immunomodulatory effects. Polygonatum flavonoid-biosynthesis-related genes have been characterized already. However, a comprehensive overview of Polygonatum flavonoid biosynthesis pathways is still
[...] Read more.
Abstract: Polygonatum cyrtonema Hua (P. cyrtonema) rhizomes are rich in flavonoids and other secondary metabolites, exhibiting remarkable antioxidant, anti-tumor, and immunomodulatory effects. Polygonatum flavonoid-biosynthesis-related genes have been characterized already. However, a comprehensive overview of Polygonatum flavonoid biosynthesis pathways is still absent. To articulate the accumulation of the flavonoid biosynthesis pathways, we examined transcriptome changes using Illumina HiSeq from five different tissues and the RNA-seq of 15 samples had over 105 Gb of a clean base, generating a total of 277,955 unigenes. The cDNA libraries of the fruits (F), leaves (L), roots (R), stems (S), and rhizomes (T) of three-year-old P. cyrtonema plants generated 57,591, 53,578, 60,321, 51,530, and 54,935 unigenes. Comparative transcriptome analysis revealed that 379 differentially expressed genes (DEGs) were in the group of F _vs_ T, L _vs_ T, R _vs_ T, and S _vs_ T, and the transcripts of flavonoid-biosynthesis-related DEGs were principally enriched in rhizomes. In addition, combined with WGCNA and the FPKM of five tissues’ transcription, nine differentially expressed transcription factor families (MYB, WRKY, AP2/ERF, etc.) were characterized in the red module, the red module positively correlated with rhizome flavonoid accumulation. Quantitative real-time PCR (qRT-PCR) further indicated that BZIP1, C3H31, ERF114, and DREB21 are differentially expressed in rhizomes, accompanied in rhizome development in P. cyrtonema. Therefore, this study provides a foundation for further research into uncovering the accumulation of flavonoid biosynthesis in the rhizomes of P. cyrtonema.
Full article
(This article belongs to the Special Issue Bioinformatics and Functional Genomics in Modern Plant Science)
Journal Menu
► ▼ Journal Menu-
- Plants Home
- Aims & Scope
- Editorial Board
- Reviewer Board
- Topical Advisory Panel
- Instructions for Authors
- Special Issues
- Topics
- Sections & Collections
- Article Processing Charge
- Indexing & Archiving
- Editor’s Choice Articles
- Most Cited & Viewed
- Journal Statistics
- Journal History
- Journal Awards
- Society Collaborations
- Conferences
- Editorial Office
Journal Browser
► ▼ Journal BrowserHighly Accessed Articles
Latest Books
E-Mail Alert
News
Topics
Topic in
Agronomy, Beverages, Fermentation, Horticulturae, Plants
Grapevine Facing Climate Change: From Land, through Plants to Grapes and Wine
Topic Editors: Othmane Merah, Ana Fernandes De Oliveira, Daniela Satta, Mario Cunha, Jesus Yuste, Jalloul BouajilaDeadline: 30 June 2024
Topic in
Agronomy, Diversity, Forests, IJPB, Plants
Plant Invasion
Topic Editors: Bruce Osborne, Panayiotis G. DimitrakopoulosDeadline: 31 July 2024
Topic in
Agriculture, Agronomy, Microorganisms, Plants, Soil Systems, Nitrogen
Carbon and Nitrogen Cycling in Agro-Ecosystems and Other Anthropogenically Maintained Ecosystems
Topic Editors: Jie Li, Adnan Mustafa, Jan FrouzDeadline: 30 September 2024
Topic in
Agronomy, Crops, Plants
Abiotic Stress Responses in Wheat: Perspectives on Productivity and Sustainability
Topic Editors: Wenshan Guo, Jinfeng Ding, Min ZhuDeadline: 31 October 2024
Conferences
Special Issues
Special Issue in
Plants
Microscopy Techniques in Plant Studies
Guest Editors: Thaiz Batista Azevedo Rangel Miguel, Emilio de Castro Miguel, Maura Da CunhaDeadline: 20 June 2024
Special Issue in
Plants
In Vitro Morphogenesis of Plants
Guest Editor: Praveen K. SaxenaDeadline: 30 June 2024
Special Issue in
Plants
New Perspectives on New World Tropical Forests
Guest Editors: Kenneth J. Feeley, Alvaro Duque, Flávia Regina Capellotto CostaDeadline: 15 July 2024
Special Issue in
Plants
Wild Edible and Medicinal Plants: Ecophysiological and Cultural Aspects for Commercial Cultivation
Guest Editors: Ioannis Karapanos, Harold Christofer Passam, Alexios AlexopoulosDeadline: 31 July 2024
Topical Collections
Topical Collection in
Plants
Advances in Plant Diversification and Biosystematics
Collection Editors: Yang Liu, Ângela Sartori
Topical Collection in
Plants
New Trends in Plant Science in Italy
Collection Editors: Claudio Moser, Massimo Galbiati
Topical Collection in
Plants
New Trends in Plant Science in China
Collection Editors: Ming Chen, Dijun Chen, Xianwen Meng
Topical Collection in
Plants
Essential Oils of Plants (Chemical Composition, Variation and Properties)
Collection Editors: Jésus Palá-Pául, Joe Brophy