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Organoids

Organoids is an international, peer-reviewed, open access journal on all aspects of organoids published quarterly online by MDPI.

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All Articles (91)

Understanding Alzheimer’s Disease Through Neurodevelopment: Insights from Human Cerebral Organoids

  • Patricia Mateos-Martínez,
  • Deanira Patrone and
  • Isabel Liste
  • + 7 authors

Alzheimer’s disease (AD) is a progressive neurodegenerative disorder and the leading cause of dementia, for which there is currently no cure. The causes of AD are still not well understood, although 5% of cases are known to have a genetic origin, associated with pathogenic genetic variants of the APP and PSEN1/2 genes. There is growing evidence that both APP and PSEN1/2 are also essential for proper human brain development and neural/neuronal function. This implies that abnormalities in early brain development could increase neuronal vulnerability to AD later in life. Human cerebral organoids (hCOs), generated from induced pluripotent stem cells (iPSCs) from AD patients, provide an exceptional model for better understanding the cellular and molecular mechanisms involved in human brain development, as well as early neurological alterations in the evolution of AD. This review compiles the main studies in which hCOs are used as a model for studying AD and for the discovery of new biomarkers. We also discuss the advantages and applications of these hCOs for studying the early stages of AD from a neurodevelopmental perspective. Finally, we mention the main current challenges in the use of hCOs for future research into AD.

10 March 2026

Neuropathological findings and cellular alterations in the AD brain. Schematic representation of the main pathological features in AD brain (right) compared to healthy brain (left): accumulation of amyloid plaques (Aβ), neurofibrillary tangles (NFTs) of phosphorylated Tau, demyelination, dendritic loss, microgliosis, and reactive astrogliosis. Upper right panel: scheme of the amyloidogenic processing of APP through the β-secretase pathway and the role of PSEN1 and PSEN2 proteins as catalytic subunits of γ-secretase in familial AD. Figure created with BioRender.com.

The tendon-to-bone enthesis is a multiphasic structure with four structurally continuous and compositionally distinct regions: tendon, uncalcified fibrocartilage, calcified fibrocartilage and bone. Our study aimed to develop 3D scaffold-free in vitro spheroids and macro-tissues of the enthesis for applications as experimental tools to understand the development and repair of enthesis injury. This study hypothesises that integrating tendon and bone cell spheroids with bone marrow mesenchymal stem cell spheroids will facilitate the production of a fibrocartilaginous interface. 3D Spheroids: The biphasic (tendon–bone) and triphasic co-culture (tendon–stem cell–bone) of spheroids in growth media and chondrogenic media were investigated to establish fusion kinetics, and the cellular and ECM components produced via histology and immunohistochemistry. Complete fusion between spheroids occurred within 6-to-8 days in biphasic co-culture, and 15-to-20 days in triphasic co-culture. Compared to biphasic, the triphasic co-culture in chondrogenic media showed a continuous interface connecting the tendon and bone regions. The presence of collagen I, sulphated proteoglycans and collagen type II in the interface region of triphasic co-culture indicates fibrochondrogenic differentiation. 3D macro-tissues: The modular tissue engineering strategy was used in this study to produce enthesis macro-tissues using spheroids as building blocks. Spheroids were bio-assembled in the triphasic manner (12 tendon spheroids, 12 stem cell spheroids and 8 bone spheroids) in the custom-designed and 3D-printed temporary supports (Formlabs Clear Resin®) using a customised spheroid bio-assembly system. The fusion of spheroids occurred by day 8 after bio-assembly, and they were removed from temporary supports and cultured in scaffold-free conditions. Although the bio-assembly methodology was successful in producing fused scaffold-free macro-tissues, the histological analysis revealed the presence of an extensive necrotic core due to the large-sized constructs. To conclude, the findings support the hypothesis that a triphasic co-culture has the potential to produce a structurally continuous fibrocartilaginous interface but requires further optimisation to produce macro-tissues with anatomical morphologies and reduced necrotic cores.

10 February 2026

(A) Diagrammatic representation of tendon-to-bone enthesis; (B) rat Achilles enthesis stained by H&E, Picrosirius red and Toluidine blue showing cellular and extracellular matrix components of four distinct zones: tendon, uncalcified fibrocartilage, calcified fibrocartilage and bone. Abbr. m: muscle; t: tendon, b: bone; BM: bone marrow of calcaneal bone, SB: subchondral bone, CF: calcified fibrocartilage, UF: uncalcified fibrocartilage, TM: tidemark, AT: Achilles tendon. Figures were independently created and recorded by the authors.

Breast cancer progression and treatment responsiveness are significantly influenced by the tumor microenvironment. Therefore, transplantation into the mammary fat pad is widely employed to establish a mouse xenograft model of breast cancer. This study reports chimeric organoids derived from breast cancer xenografts composed of human and mouse cells. During passaging of an organoid line derived from breast cancer xenografts, characteristic cell clusters composed of smaller cells were observed. Immunostaining with a mouse-specific antibody revealed that the smaller cells were mouse cells composed of luminal- and basal-like cells. Chimeric organoids were observed in four of the six xenograft-derived organoid lines. Organoids composed solely of human cells rapidly diminished after passaging, with chimeric and mouse-cell-only organoids becoming predominant. When human breast cancer cells were co-cultured with mouse mammary epithelial cells, chimeras were frequently observed. The PCNA positivity rate in breast cancer cells within chimeras was higher than that in breast cancer cells within organoids composed solely of human cells. These findings indicate that xenograft-derived breast cancer organoids frequently contain mouse cells and that mouse mammary epithelial cells promote the proliferation of human breast cancer cells.

6 February 2026

The presence of mouse cells in organoids derived from xenografts. (A) During the passaging process of M63 breast cancer organoids, cell clusters of differing sizes were observed. The upper panels show large cell clusters, while the lower panels show small cell clusters. Left panels: bright-field images; right panels: Hoechst 33342 staining. Scale bar: 20 μm. (B) Microscopic and immunofluorescence (IF) staining images of spheroids derived from large (upper panels) and small (lower panels) cell clusters. mCyclophilin A (green): staining with a mouse-specific anti-cyclophilin A antibody; 4′,6-diamidino-2-phenylindole (DAPI, blue). Scale bars: 100 μm (brightfield), 50 μm (hematoxylin and eosin [HE], mCyclophilin A and DAPI). (C) IF staining of serial sections of spheroids derived from mouse cells isolated from M63 breast cancer organoids. Nuclei were counterstained with DAPI (blue). Scale bar, 50 μm. (D) Microscopic and IF staining images of mouse mammary organoids. IF images were obtained from serial sections. Nuclei were counterstained with DAPI (blue). Scale bar: 100 μm (brightfield), 50 μm (IF staining).

Precise control and measurement of the cellular microenvironment, particularly oxygen concentration, are crucial for developing physiologically relevant in vitro models. However, current methods often lack the spatial resolution and throughput needed to investigate complex, oxygen-dependent biological mechanisms in 3D cell cultures. Here, we present an advanced platform based on microcavity arrays featuring integrated, ratiometric oxygen sensors, so-called SensoSpheres. A unique bevel design at the cavity entrance enables the non-invasive, real-time measurement of pericellular oxygen concentration and oxygen gradients. We established protocols for generating spheroids from various cell lines (e.g., HepG2, HeLa) and characterized their metabolic responses under precisely controlled hypoxic, normoxic, and hyperoxic conditions. Using a dose–response assay, we demonstrate the platform’s sensitivity in capturing distinct metabolic shifts in response to acetaminophen and cisplatin. Furthermore, we introduce the Oxygen Consumption Recovery Rate (OCRR) as a novel parameter to quantify cellular resilience after exposure to toxic compounds such as cisplatin and acetaminophen. This high-throughput-compatible platform represents a significant methodological advancement, enabling detailed studies of oxygen-dependent cellular processes, drug toxicity, and metabolic adaptation. Its potential for integration into microfluidic systems paves the way for more sophisticated organ-on-chip models, ultimately improving the predictive power of preclinical research.

6 February 2026

Refined base flow diagram for defining operating modes with 2-way valves. The schematic shows the principal components and flow paths used to control medium delivery and gas exchange for microcavity-array reactors, including a single micropump (Pump), a microreactor containing the microcavity array (Bioreactor), an oxygenator with gas-exchange membrane, an injection port, a series of normally closed 2-way valves (NC-001 to NC-008) and fresh medium/purge reservoirs depicted as inlet and outlet streams. Arrows indicate the primary pump flow direction; valve states are used to configure distinct operational modes while minimizing dead volume and branch length to enable rapid switching and reproducible perfusion. Based on this layout, the following operating modes were implemented: (1) recirculation through all modules (full-circuit mode); (2) recirculation with the oxygenator bypassed (oxygenator bypass/hypoxia induction); (3) flush/medium exchange; (4) flush/medium exchange with the oxygenator bypassed. This diagram serves as the reference layout for the valve-state table used to operate and automate experiments.

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Organoids - ISSN 2674-1172