Environmental Microbiology
A section of Microorganisms (ISSN 2076-2607).
Section Information
Microbial communities are responsible for energy and nutrient cycling and are massively involved in the planet’s sustainability. Microbes are directly involved in the dynamics of climate change by their impact on the destabilization, mineralization and sequestration of organic matter. The facets of microbial diversity consist of morphological, structural, metabolic, ecological or evolutionary diversity; however, the central question in microbial ecology—“Who eats what, where and when?”—queries how the key player in the community is to perform the most meaningful activity. To answer this, one major task is to identify the relationships between the composition of the microbial community and the functional processes.
Here, we introduce the section Environmental Microbiology. This section will be devoted to topics that remain focused on the study of microbial processes in the environment, microbial communities and microbial interactions; including the OMICS technologies and cross-disciplinary studies dedicated to basic and/or applied research. The editorial board will review all manuscripts submitted for publication in this section. However, articles which seem to be outside the scope of the subject matter listed here may be referred to another section of Microorganisms.
Keywords
- Structure and function of microbial communities
- Microbial community genetics, transcriptomics, proteomics and metabolomics
- Microbial interaction
- Microbial communication
- Microbial ecology
- Microbial population biology
- Biogeochemical processes (C, N, P, S-cycles)
- Microbial life in extreme environments
- Evolutionary processes of microbial communities
- Biofilm formation and surfaces of microbes
- Metabolic flux analysis and stable isotope probing (DNA, RNA and protein)
- Microbiome biology of environmental habitats (e.g., soil, rhizosphere or aquifer)
- Microbial treatment: microbial biodegradation, microbial bioremediation, microbial and waste recycling, microbial pesticide, microbial fertilizer, et al.
- Microbial pollution: pathogenic microorganisms in the environment (water/soil/air/food); microbial metabolism and environmental pollution (e.g., microbial toxin), et al.
- Microbiological monitoring: testing methods and monitoring techniques development
Editorial Board
Topical Advisory Panel
Special Issues
Following special issues within this section are currently open for submissions:
- Microbial Diversity in Different Environments (Deadline: 31 March 2026)
- Interaction Between Microorganisms and Environment (Deadline: 31 March 2026)
- Microbial Dynamics in Desert Ecosystems (Deadline: 31 March 2026)
- Fungal Ecology on a Changing Planet (Deadline: 31 March 2026)
- Microbial Contamination in Indoor Environments (Deadline: 31 March 2026)
- Microorganisms in Agriculture, 2nd Edition (Deadline: 31 March 2026)
- Climate Warming and Eutrophication on Phytoplankton Ecology: Effects and Restoration (Deadline: 31 March 2026)
- Microbial Life: Ecology, Health, and Sustainability (Deadline: 31 March 2026)
- Endophytic Fungus as Producers of New and/or Bioactive Substances, Second Edition (Deadline: 31 March 2026)
- Fungal Metabolites: Powering Pharmacological and Agricultural Frontiers (Deadline: 31 March 2026)
- Microbial Responses to Nutrient and Trace Metal Stress in Marine and Extreme Environments (Deadline: 31 March 2026)
- Advances in Magnetotactic Bacteria (Deadline: 30 April 2026)
- Microbial Communities in Soil: Drivers of Terrestrial Ecosystem Processes (Deadline: 30 April 2026)
- Advances in Soil Microbial Ecology, 3rd Edition (Deadline: 30 April 2026)
- Bacteriophages in Diverse Environments—Physiology, Genetics, and Potential Biotechnological Applications (Deadline: 30 April 2026)
- Bioaerosols and Their Health Impacts (Deadline: 30 April 2026)
- Sustainable Approaches to Mitigate Antimicrobial Resistance in the Environment (Deadline: 30 April 2026)
- Advances in Microbiologically Influenced Corrosion: Mechanisms, Microbial Communities, Early Detection and Control Strategies (Deadline: 30 April 2026)
- Research of Soil Microbial Communities (Deadline: 30 April 2026)
- Effect of Microbial Communities for Environmental Protection and Development of Agriculture, Second Edition (Deadline: 30 April 2026)
- Role of Soil Microorganisms in Agricultural Production and Environmental Biotechnologies (Deadline: 20 May 2026)
- Sustainable Waste Biotechnologies: Biodegradation, Biotransformation, and Bioconversion (Deadline: 31 May 2026)
- Microbial Diversity and Ecology in Different Environments (Deadline: 31 May 2026)
- Microbiome-Driven Agriculture: Transforming Sustainability and Resilience Through Functional Microbial Insights and Metagenomics (Deadline: 31 May 2026)
- Microbial Communities and Nitrogen Cycling (Deadline: 31 May 2026)
- Advances in Research on Cyanobacteria and Cyanotoxins (Deadline: 31 May 2026)
- Microalgae at the Nexus of Sustainability: From Ecosystem Health to Biotechnological Innovation (Deadline: 31 May 2026)
- Soil Microbial Carbon/Nitrogen/Phosphorus Cycling: 2nd Edition (Deadline: 31 May 2026)
- Advances in Airborne Microbial Communities (Deadline: 31 May 2026)
- Phytoplankton Faced with Emergent Pollutants (Deadline: 31 May 2026)
- Microbes in Wastewater Treatment (Deadline: 31 May 2026)
- Halophiles (Deadline: 31 May 2026)
- Advances in Microbial Adaptation and Evolution (Deadline: 31 May 2026)
- Surveillance of Pathogens in Wastewater (Deadline: 30 June 2026)
- Microbial Communities Responding to Emerging Contaminants in Wastewater Treatment (Deadline: 30 June 2026)
- The Diversity of Microorganisms from Extreme Marine Environments (Deadline: 30 June 2026)
- Microbial Community Structure and Functions in Marine Sediments (Deadline: 30 June 2026)
- Research on Airborne Microbial Communities (Deadline: 30 June 2026)
- Molecular Mechanisms of Algal and Microbial Adaptation to Extreme Temperature Conditions (Deadline: 30 June 2026)
- Food- and Waterborne Pathogens: Epidemiology, Genomics, Virulence, and Resistance Profiles, 2nd Edition (Deadline: 30 June 2026)
- Microparasites: Diversity, Phylogeny and Molecular Characterization (Deadline: 30 June 2026)
- Environmental Microbes in Antimicrobial Resistance and Soil Pollution Mitigation (Deadline: 30 June 2026)
- Microbial Nutrient Cycling Mechanisms (Deadline: 30 June 2026)
- Interactions Between Microorganisms and Environments in Extreme Ecosystems (Deadline: 30 July 2026)
- Microorganisms in Plastics and Bioplastics: Biodegradation, Biosynthesis, and Environmental Impacts (Deadline: 31 July 2026)
- Microorganisms: Climate Change and Terrestrial Ecosystems (Deadline: 31 July 2026)
- Microbiota Dynamics in Environmental and Host Systems: From Ecology to Applications (Deadline: 31 July 2026)
- State-of-the-Art Environmental Microbiology in China 2026 (Deadline: 31 July 2026)
- Coral Microbiome and Microbial Ecology (Deadline: 31 July 2026)
- Microbial Transformations of Arsenic (Deadline: 31 July 2026)
- Insights into the Microbial Ecology of Extreme Freshwater Systems (Deadline: 31 July 2026)
- Microbial Communities and Their Functions in the Environment (Deadline: 30 August 2026)
- Surveillance of Pathogens in the Environment (Deadline: 31 August 2026)
- Role of Microbes in Environmental Pollution and Remediation (Deadline: 31 August 2026)
- Microbiome as Drivers of Environmental Resilience and Human Well-Being (Deadline: 31 August 2026)
- Chemolithoautotrophic Microorganisms—Pioneers of Biospheric Evolution and Sustainable Biotechnology (Deadline: 31 August 2026)
- Fungal Diversity and Bioactive Potential: From Taxonomy to Therapeutic Applications (Deadline: 31 August 2026)
- Microbial Taxonomy and Environmental Metagenomics: Diversity, Dynamics, and Functional Genes (Deadline: 31 August 2026)
- Aquatic Microorganisms and Their Application in Aquaculture, 2nd Edition (Deadline: 31 August 2026)
- Research on Microbial Diversity and Antibiotic Resistance in Wastewater (Deadline: 31 August 2026)
- Microbial Responses and Adaptations to Environmental Changes (Deadline: 31 August 2026)
- Surveillance of Health-Relevant Pathogens Employing Wastewater (Deadline: 31 August 2026)
- Microbial Solutions for Sustainable Resource Recovery and Environmental Remediation, 2nd Edition (Deadline: 30 September 2026)
- Genomics of Marine and Aquatic Bacteria: A Focus on Novel Taxa, Diversity and Biotechnological Potential, 3rd Edition (Deadline: 30 September 2026)
- Environmental Microorganisms in Sediments (Deadline: 30 September 2026)
- Bioproducts from Cyanobacteria and Microalgae: Current Trends and Future Perspectives (Deadline: 31 October 2026)
- Hydrothermal Microorganisms (Deadline: 30 November 2026)
- Microbiome- and Macrobiome-Enhanced Weathering for Carbon Capture and Climate Mitigation (Deadline: 31 December 2026)
Topical Collections
Following topical collections within this section are currently open for submissions: