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Aquaculture Journal

Aquaculture Journal is an international, peer-reviewed, open access journal on aquaculture-related aquatic science published quarterly online by MDPI.

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All Articles (102)

The objective of this study was to evaluate relationships between antimicrobial use (AMU) and antimicrobial resistance (AMR) in isolates from farmed Atlantic salmon that could represent finfish pathogens in the British Columbia (BC) aquaculture industry using historical surveillance data. Antimicrobial susceptibility data were obtained for 1040 bacterial isolates from farmed Atlantic salmon submissions to the BC Animal Health Centre for 2007–2018. Antimicrobial use data were provided by the BC Ministry of Agriculture and Food from feed mill prescriptions for BC farmed Atlantic salmon for 2007–2018. Multivariable logistic regression models for all bacterial isolates with a random intercept for species were developed to determine associations with outcomes of resistance to trimethoprim-sulfadiazine (SXT), oxytetracycline (OXY), and florfenicol (FLOR). Resistance to SXT, FLOR, and/or OXY were all significantly associated with each resistance outcome in their respective models. Only the SXT resistance model was significantly associated with AMU, specifically potentiated sulfonamide use, but use was not significantly associated with AMR for any other resistance outcome. The results of this study contribute to the rapidly growing and increasingly pertinent body of literature on AMU and AMR in the unique marine aquaculture environment. Future research at the farm level linking pen-specific AMU to AMR outcomes will provide more understanding of selection pressure for AMR at the local level and provide more guidance for antimicrobial stewardship in finfish aquaculture.

10 March 2026

Annual antimicrobial use (mg/kg biomass—grey) and percentage of resistant isolates (colours; all bacterial isolates n = 1040) for farmed Atlantic salmon from British Columbia 2007–2018. FLOR—florfenicol; OXY—oxytetracycline; SXT—trimethoprim-sulfadiazine; TRI—triple sulfonamide combination (sulphamerazine, sulphathiazole, and sulfadiazine). Antimicrobial use data were available for 2004–2006; AMR data were not available for these years.

With the global population projected to continue to increase, the necessity for food security (i.e., a region’s ability to reliably provide food to its residents) becomes ever-present. Aquaculture is currently one of the most prevalent methods for propagating aquatic species, though aquaponics (i.e., combining aquaculture and hydroponics to artificially propagate aquatic species and plants) is often considered a more sustainable food production method in comparison. Though aquaponics is promising both environmentally and socially, the general aquaponics business model is failing to generate proper revenue in many instances. The addition of value-added and value-recovered processes is one option for producers to increase the value of their final products without major capital investment. A paper survey was deployed for this study for both aquaculture and aquaponics operations, given the current prevalence of aquaculture and infancy of aquaponics in the United States. The survey aims to understand the basic parameters of their operation while also gauging interest in the addition of value-added and value-recovered products for their operations. Less than half of the respondents were interested in value-added and value-recovered products for several different reasons. The survey also provides useful information related to operation, prior experiences, and potential future directions for aquaponics in the United States, though investigation into consumer preferences is required for optimized success of the aquaponics industry.

4 March 2026

Years of operation for surveyed producers, including closed operations.

Photoperiod-Mediated Transcriptomic Regulation of Spawning in Octopus mimus

  • Calixto Quispe-Pilco,
  • Inês Ferreira and
  • Manuel Nande
  • + 8 authors

Background: The reproductive cycle of Octopus mimus is regulated by environmental and hormonal factors, with photoperiod playing a key role in spawning induction and reproductive maturation. Understanding its underlying molecular mechanisms is essential for developing strategies to enhance controlled reproduction in aquaculture. Methods: We analyzed the expression of genes involved in the photoperiod-activated spawning induction cascade in the optic lobe and its downstream effects on the oviducal gland by performing transcriptomic analyses on females exposed to continuous light (24:0), which inhibits reproductive development, and a natural photoperiod, which induces spawning. The mRNA sequencing (RNA-Seq), quality control, gene annotation, and differential expression analyses were conducted using edgeR. Results: Spawning was completely inhibited under constant light, while 80% of control females spawned. Expression profiling revealed 89 downregulated and 34 upregulated genes in the optic lobe, and 178 downregulated and 237 upregulated genes in the oviducal gland (FDR < 0.05, |log2FC| ≥ 2), including key orthologs such as FMRFamide and myomodulin. Conclusions: These results show that the optic lobe integrates photoperiodic cues that modulate reproductive activation via a neuroendocrine cascade and coordinates spawning regulation through the oviducal gland, providing insights for improving reproductive control in aquaculture systems.

3 March 2026

Differential gene expression in the optic lobe of Octopus mimus females exposed to constant light conditions compared to those maintained under natural conditions (dark). (A), Differential expression analysis highlighting upregulated genes (blue) and downregulated genes (red) in the optic lobe under constant light (24:0) compared to natural photoperiod conditions (FDR &lt; 0.05). (B), Heatmap and hierarchical clustering of differentially expressed genes based on normalized expression values. Columns represent individual optic lobe samples from females maintained under natural conditions (Dark OL 1–3) and constant light conditions (Light OL 1–3). Color hue and intensity indicate relative expression levels, showing clear separation by photoperiod treatment. (C), Volcano plot showing the distribution of gene expression changes, where the x-axis represents log2 fold change and the y-axis represents −log10 adjusted p-value. Genes on the left correspond to transcripts downregulated under constant light, whereas genes on the right represent transcripts upregulated under constant light.

The biofloc technology (BFT) system is widely used in aquaculture for the cultivation of Pacific white shrimp (Penaeus vannamei). While the practice of reusing percentages of water from previous crops to initiate the system is common, this study aimed to determine the minimum inoculum of total suspended solids (TSS) required for the rapid stabilization of nitrogen compounds and the bacterial community. The experiment was conducted in 400 L experimental units stocked with juvenile P. vannamei. We compared six treatments with different initial inoculum concentrations: control (0 mg/L), 2.5 mg/L, 5 mg/L, 10 mg/L, 20 mg/L, and 40 mg/L. These concentrations corresponded to inoculations of 0%, 0.625%, 1.25%, 2.5%, 5%, and 10% of mature biofloc water with an initial TSS concentration of 400 mg/L. Treatments with an inoculum showed a more effective oxidation of ammonia and nitrite compared to the control. However, the 2.5 mg/L treatment differed significantly (p < 0.05) from the other inoculated treatments, exhibiting persistently high ammonia concentrations and a slower stabilization time. Survival rates in the 5, 10, 20, and 40 mg/L treatments were significantly higher (p < 0.05) than in the control and 2.5 mg/L treatments, remaining around 95%, while the latter had survival rates of 48.75% and 65.83%, respectively. The final biomass were as follows: control: 479.7 ± 30 g; 2.5 mg 628.1 ± 93.3 g; 5 mg 976.5 ± 128.1 g; 10 mg 850.3 ± 158.1 g; 20 mg 789.6 ± 122.7 g; 40 mg 856 ± 96.9 g. Final biomass and productivity were highest in the 5 mg/L treatment and did not differ significantly among the 10, 20, and 40 mg/L treatments. The results suggest that in a BFT system for P. vannamei, a minimum inoculum of 5 mg/L of TSS is sufficient to achieve high water quality and superior zootechnical performance.

28 February 2026

Nitrogen concentrations (ammonia, nitrite and nitrate) in the treatments: control, 2.5, 5, 10, 20 and 40 mg L−1 over the 45 days of the experiment.

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Aquac. J. - ISSN 2673-9496