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Search Results (1,038)

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17 pages, 2112 KiB  
Article
Direct Detection of Orthoflavivirus via Gold Nanorod Plasmon Resonance
by Erica Milena de Castro Ribeiro, Bruna de Paula Dias, Cyntia Silva Ferreira, Samara Mayra Soares Alves dos Santos, Rajiv Gandhi Gopalsamy, Estefânia Mara do Nascimento Martins, Cintia Lopes de Brito Magalhães, Flavio Guimarães da Fonseca, Luiz Felipe Leomil Coelho, Cristiano Fantini, Luiz Orlando Ladeira, Lysandro Pinto Borges and Breno de Mello Silva
Sensors 2025, 25(15), 4775; https://doi.org/10.3390/s25154775 - 3 Aug 2025
Viewed by 185
Abstract
Dengue, Zika, yellow fever, chikungunya, and Mayaro arboviruses represent an increasing threat to public health because of the serious infections they cause annually in many countries. Serological diagnosis of these viruses is challenging, making the development of new diagnostic strategies imperative. In this [...] Read more.
Dengue, Zika, yellow fever, chikungunya, and Mayaro arboviruses represent an increasing threat to public health because of the serious infections they cause annually in many countries. Serological diagnosis of these viruses is challenging, making the development of new diagnostic strategies imperative. In this study, we investigated the effectiveness of gold nanorods (GNRs) functionalized with specific anti-dengue and anti-orthoflavivirus antibodies in detecting viral particles. GNRs were created with a length-to-width ratio of up to 5.5, a size of 71.4 ± 6.5 nm, and a light absorption peak at 927 nm, and they were treated with 4 mM polyethyleneimine. These GNRs were attached to a small amount of monoclonal antibodies that target flaviviruses, and the viral particles were detected by measuring the localized surface plasmon resonance using an UV-Vis/NIR spectrometer. The tests found Orthoflavivirus dengue and Orthoflavivirus zikaense in diluted human serum and ground-up mosquitoes, with the lowest detectable amount being 100 PFU/mL. The GNRs described in this study can be used to enhance flavivirus diagnostic tests or to develop new, faster, and more accurate diagnostic techniques. Additionally, the functionalized GNRs presented here are promising for supporting virological surveillance studies in mosquitoes. Our findings highlight a fast and highly sensitive method for detecting Orthoflavivirus in both human and mosquito samples, with a detection limit as low as 100 PFU/mL. Full article
(This article belongs to the Section Biosensors)
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18 pages, 4279 KiB  
Article
Chemophotothermal Combined Therapy with 5-Fluorouracil and Branched Gold Nanoshell Hyperthermia Induced a Reduction in Tumor Size in a Xenograft Colon Cancer Model
by Sarah Eliuth Ochoa-Hugo, Karla Valdivia-Aviña, Yanet Karina Gutiérrez-Mercado, Alejandro Arturo Canales-Aguirre, Verónica Chaparro-Huerta, Adriana Aguilar-Lemarroy, Luis Felipe Jave-Suárez, Mario Eduardo Cano-González, Antonio Topete, Andrea Molina-Pineda and Rodolfo Hernández-Gutiérrez
Pharmaceutics 2025, 17(8), 988; https://doi.org/10.3390/pharmaceutics17080988 (registering DOI) - 30 Jul 2025
Viewed by 319
Abstract
Background/Objectives: The heterogeneity of cancer disease and the frequent ineffectiveness and resistance observed with currently available treatments highlight the importance of developing new antitumor therapies. The properties of gold nanoparticles, such as their photon-energy heating, are attractive for oncology therapy; this can [...] Read more.
Background/Objectives: The heterogeneity of cancer disease and the frequent ineffectiveness and resistance observed with currently available treatments highlight the importance of developing new antitumor therapies. The properties of gold nanoparticles, such as their photon-energy heating, are attractive for oncology therapy; this can be effective and localized. The combination of chemotherapy and hyperthermia is promising. Our aim was to evaluate the combination therapy of photon hyperthermia with 5-fluorouracil (5-FU) both in vitro and in vivo. Methods: This study evaluated the antitumor efficacy of a combined chemo-photothermal therapy using 5-fluorouracil (5-FU) and branched gold nanoshells (BGNSs) in a colorectal cancer model. BGNSs were synthesized via a seed-mediated method and characterized by electron microscopy and UV–vis spectroscopy, revealing an average diameter of 126.3 nm and a plasmon resonance peak at 800 nm, suitable for near-infrared (NIR) photothermal applications. In vitro assays using SW620-GFP colon cancer cells demonstrated a ≥90% reduction in cell viability after 24 h of combined treatment with 5-FU and BGNS under NIR irradiation. In vivo, xenograft-bearing nude mice received weekly intratumoral administrations of the combined therapy for four weeks. The group treated with 5-FU + BGNS + NIR exhibited a final tumor volume of 0.4 mm3 on day 28, compared to 1010 mm3 in the control group, corresponding to a tumor growth inhibition (TGI) of 100.74% (p < 0.001), which indicates not only complete inhibition of tumor growth but also regression below the initial tumor volume. Thermographic imaging confirmed that localized hyperthermia reached 45 ± 0.5 °C at the tumor site. Results: These findings suggest that the combination of 5-FU and BGNS-mediated hyperthermia may offer a promising strategy for enhancing therapeutic outcomes in patients with colorectal cancer while potentially minimizing systemic toxicity. Conclusions: This study highlights the potential of integrating nanotechnology with conventional chemotherapy for more effective and targeted cancer treatment. Full article
(This article belongs to the Special Issue Advanced Nanotechnology for Combination Therapy and Diagnosis)
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32 pages, 1971 KiB  
Review
Research Progress in the Detection of Mycotoxins in Cereals and Their Products by Vibrational Spectroscopy
by Jihong Deng, Mingxing Zhao and Hui Jiang
Foods 2025, 14(15), 2688; https://doi.org/10.3390/foods14152688 - 30 Jul 2025
Viewed by 172
Abstract
Grains and their derivatives play a crucial role as staple foods for the global population. Identifying grains in the food chain that are free from mycotoxin contamination is essential. Researchers have explored various traditional detection methods to address this concern. However, as grain [...] Read more.
Grains and their derivatives play a crucial role as staple foods for the global population. Identifying grains in the food chain that are free from mycotoxin contamination is essential. Researchers have explored various traditional detection methods to address this concern. However, as grain consumption becomes increasingly time-sensitive and dynamic, traditional approaches face growing limitations. In recent years, emerging techniques—particularly molecular-based vibrational spectroscopy methods such as visible–near-infrared (Vis–NIR), near-infrared (NIR), Raman, mid-infrared (MIR) spectroscopy, and hyperspectral imaging (HSI)—have been applied to assess fungal contamination in grains and their products. This review summarizes research advances and applications of vibrational spectroscopy in detecting mycotoxins in grains from 2019 to 2025. The fundamentals of their work, information acquisition characteristics and their applicability in food matrices were outlined. The findings indicate that vibrational spectroscopy techniques can serve as valuable tools for identifying fungal contamination risks during the production, transportation, and storage of grains and related products, with each technique suited to specific applications. Given the close link between grain-based foods and humans, future efforts should further enhance the practicality of vibrational spectroscopy by simultaneously optimizing spectral analysis strategies across multiple aspects, including chemometrics, model transfer, and data-driven artificial intelligence. Full article
(This article belongs to the Section Food Analytical Methods)
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22 pages, 3506 KiB  
Review
Spectroscopic and Imaging Technologies Combined with Machine Learning for Intelligent Perception of Pesticide Residues in Fruits and Vegetables
by Haiyan He, Zhoutao Li, Qian Qin, Yue Yu, Yuanxin Guo, Sheng Cai and Zhanming Li
Foods 2025, 14(15), 2679; https://doi.org/10.3390/foods14152679 - 30 Jul 2025
Viewed by 336
Abstract
Pesticide residues in fruits and vegetables pose a serious threat to food safety. Traditional detection methods have defects such as complex operation, high cost, and long detection time. Therefore, it is of great significance to develop rapid, non-destructive, and efficient detection technologies and [...] Read more.
Pesticide residues in fruits and vegetables pose a serious threat to food safety. Traditional detection methods have defects such as complex operation, high cost, and long detection time. Therefore, it is of great significance to develop rapid, non-destructive, and efficient detection technologies and equipment. In recent years, the combination of spectroscopic techniques and imaging technologies with machine learning algorithms has developed rapidly, providing a new attempt to solve this problem. This review focuses on the research progress of the combination of spectroscopic techniques (near-infrared spectroscopy (NIRS), hyperspectral imaging technology (HSI), surface-enhanced Raman scattering (SERS), laser-induced breakdown spectroscopy (LIBS), and imaging techniques (visible light (VIS) imaging, NIRS imaging, HSI technology, terahertz imaging) with machine learning algorithms in the detection of pesticide residues in fruits and vegetables. It also explores the huge challenges faced by the application of spectroscopic and imaging technologies combined with machine learning algorithms in the intelligent perception of pesticide residues in fruits and vegetables: the performance of machine learning models requires further enhancement, the fusion of imaging and spectral data presents technical difficulties, and the commercialization of hardware devices remains underdeveloped. This review has proposed an innovative method that integrates spectral and image data, enhancing the accuracy of pesticide residue detection through the construction of interpretable machine learning algorithms, and providing support for the intelligent sensing and analysis of agricultural and food products. Full article
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25 pages, 9676 KiB  
Article
A Comparative Analysis of SAR and Optical Remote Sensing for Sparse Forest Structure Parameters: A Simulation Study
by Zhihui Mao, Lei Deng, Xinyi Liu and Yueyang Wang
Forests 2025, 16(8), 1244; https://doi.org/10.3390/f16081244 - 29 Jul 2025
Viewed by 268
Abstract
Forest structure parameters are critical for understanding and managing forest ecosystems, yet sparse forests have received limited attention in previous studies. To address this research gap, this study systematically evaluates and compares the sensitivity of active Synthetic Aperture Radar (SAR) and passive optical [...] Read more.
Forest structure parameters are critical for understanding and managing forest ecosystems, yet sparse forests have received limited attention in previous studies. To address this research gap, this study systematically evaluates and compares the sensitivity of active Synthetic Aperture Radar (SAR) and passive optical remote sensing to key forest structure parameters in sparse forests, including Diameter at Breast Height (DBH), Tree Height (H), Crown Width (CW), and Leaf Area Index (LAI). Using the novel computer-graphics-based radiosity model applicable to porous individual thin objects, named Radiosity Applicable to Porous Individual Objects (RAPID), we simulated 38 distinct sparse forest scenarios to generate both SAR backscatter coefficients and optical reflectance across various wavelengths, polarization modes, and incidence/observation angles. Sensitivity was assessed using the coefficient of variation (CV). The results reveal that C-band SAR in HH polarization mode demonstrates the highest sensitivity to DBH (CV = −6.73%), H (CV = −52.68%), and LAI (CV = −63.39%), while optical data in the red band show the strongest response to CW (CV = 18.83%) variations. The study further identifies optimal acquisition configurations, with SAR data achieving maximum sensitivity at smaller incidence angles and optical reflectance performing best at forward observation angles. This study addresses a critical gap by presenting the first systematic comparison of the sensitivity of multi-band SAR and VIS/NIR data to key forest structural parameters across sparsity gradients, thereby clarifying their applicability for monitoring young and middle-aged sparse forests with high carbon sequestration potential. Full article
(This article belongs to the Section Forest Inventory, Modeling and Remote Sensing)
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22 pages, 3083 KiB  
Article
Evaluating the Effect of Thermal Treatment on Phenolic Compounds in Functional Flours Using Vis–NIR–SWIR Spectroscopy: A Machine Learning Approach
by Achilleas Panagiotis Zalidis, Nikolaos Tsakiridis, George Zalidis, Ioannis Mourtzinos and Konstantinos Gkatzionis
Foods 2025, 14(15), 2663; https://doi.org/10.3390/foods14152663 - 29 Jul 2025
Viewed by 355
Abstract
Functional flours, high in bioactive compounds, have garnered increasing attention, driven by consumer demand for alternative ingredients and the nutritional limitations of wheat flour. This study explores the thermal stability of phenolic compounds in various functional flours using visible, near and shortwave-infrared (Vis–NIR–SWIR) [...] Read more.
Functional flours, high in bioactive compounds, have garnered increasing attention, driven by consumer demand for alternative ingredients and the nutritional limitations of wheat flour. This study explores the thermal stability of phenolic compounds in various functional flours using visible, near and shortwave-infrared (Vis–NIR–SWIR) spectroscopy (350–2500 nm), integrated with machine learning (ML) algorithms. Random Forest models were employed to classify samples based on flour type, baking temperature, and phenolic concentration. The full spectral range yielded high classification accuracy (0.98, 0.98, and 0.99, respectively), and an explainability framework revealed the wavelengths most relevant for each class. To address concerns regarding color as a confounding factor, a targeted spectral refinement was implemented by sequentially excluding the visible region. Models trained on the 1000–2500 nm and 1400–2500 nm ranges showed minor reductions in accuracy, suggesting that classification is not solely driven by visible characteristics. Results indicated that legume and wheat flours retain higher total phenolic content (TPC) under mild thermal conditions, whereas grape seed flour (GSF) and olive stone flour (OSF) exhibited notable thermal stability of TPC even at elevated temperatures. These first findings suggest that the proposed non-destructive spectroscopic approach enables rapid classification and quality assessment of functional flours, supporting future applications in precision food formulation and quality control. Full article
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17 pages, 1794 KiB  
Article
Detection of Cumulative Bruising in Prunes Using Vis–NIR Spectroscopy and Machine Learning: A Nonlinear Spectral Response Approach
by Lisi Lai, Hui Zhang, Jiahui Gu and Long Wen
Appl. Sci. 2025, 15(15), 8190; https://doi.org/10.3390/app15158190 - 23 Jul 2025
Viewed by 184
Abstract
Early and accurate detection of mechanical damage in prunes is crucial for preserving postharvest quality and enabling automated sorting. This study proposes a practical and reproducible method for identifying cumulative bruising in prunes using visible–near-infrared (Vis–NIR) reflectance spectroscopy coupled with machine learning techniques. [...] Read more.
Early and accurate detection of mechanical damage in prunes is crucial for preserving postharvest quality and enabling automated sorting. This study proposes a practical and reproducible method for identifying cumulative bruising in prunes using visible–near-infrared (Vis–NIR) reflectance spectroscopy coupled with machine learning techniques. A self-developed impact simulation device was designed to induce progressive damage under controlled energy levels, simulating realistic postharvest handling conditions. Spectral data were collected from the equatorial region of each fruit and processed using a hybrid modeling framework comprising continuous wavelet transform (CWT) for spectral enhancement, uninformative variable elimination (UVE) for optimal wavelength selection, and support vector machine (SVM) for classification. The proposed CWT-UVE-SVM model achieved an overall classification accuracy of 93.22%, successfully distinguishing intact, mildly bruised, and cumulatively damaged samples. Notably, the results revealed nonlinear reflectance variations in the near-infrared region associated with repeated low-energy impacts, highlighting the capacity of spectral response patterns to capture progressive physiological changes. This research not only advances nondestructive detection methods for prune grading but also provides a scalable modeling strategy for cumulative mechanical damage assessment in soft horticultural products. Full article
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13 pages, 788 KiB  
Article
Advancing Kiwifruit Maturity Assessment: A Comparative Study of Non-Destructive Spectral Techniques and Predictive Models
by Michela Palumbo, Bernardo Pace, Antonia Corvino, Francesco Serio, Federico Carotenuto, Alice Cavaliere, Andrea Genangeli, Maria Cefola and Beniamino Gioli
Foods 2025, 14(15), 2581; https://doi.org/10.3390/foods14152581 - 23 Jul 2025
Viewed by 246
Abstract
Gold kiwifruits from two different farms, harvested at different times, were analysed using both non-destructive and destructive methods. A computer vision system (CVS) and a portable spectroradiometer were used to perform non-destructive measurements of firmness, titratable acidity, pH, soluble solids content, dry matter, [...] Read more.
Gold kiwifruits from two different farms, harvested at different times, were analysed using both non-destructive and destructive methods. A computer vision system (CVS) and a portable spectroradiometer were used to perform non-destructive measurements of firmness, titratable acidity, pH, soluble solids content, dry matter, and soluble sugars (glucose and fructose), with the goal of building predictive models for the maturity index. Hyperspectral data from the visible–near-infrared (VIS–NIR) and short-wave infrared (SWIR) ranges, collected via the spectroradiometer, along with colour features extracted by the CVS, were used as predictors. Three different regression methods—Partial Least Squares (PLS), Support Vector Regression (SVR), and Gaussian process regression (GPR)—were tested to assess their predictive accuracy. The results revealed a significant increase in sugar content across the different harvesting times in the season. Regardless of the regression method used, the CVS was not able to distinguish among the different harvests, since no significant skin colour changes were measured. Instead, hyperspectral measurements from the near-infrared (NIR) region and the initial part of the SWIR region proved useful in predicting soluble solids content, glucose, and fructose. The models built using these spectral regions achieved R2 average values between 0.55 and 0.60. Among the different regression models, the GPR-based model showed the best performance in predicting kiwifruit soluble solids content, glucose, and fructose. In conclusion, for the first time, the effectiveness of a fully portable spectroradiometer measuring surface reflectance until the full SWIR range for the rapid, contactless, and non-destructive estimation of the maturity index of kiwifruits was reported. The versatility of the portable spectroradiometer may allow for field applications that accurately identify the most suitable moment to carry out the harvesting. Full article
(This article belongs to the Section Food Quality and Safety)
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21 pages, 2817 KiB  
Article
A Handheld IoT Vis/NIR Spectroscopic System to Assess the Soluble Solids Content of Wine Grapes
by Xu Zhang, Ziquan Qin, Ruijie Zhao, Zhuojun Xie and Xuebing Bai
Sensors 2025, 25(14), 4523; https://doi.org/10.3390/s25144523 - 21 Jul 2025
Viewed by 324
Abstract
The quality of wine largely depends on the quality of wine grapes, which is determined by their chemical composition. Therefore, measuring parameters related to grape ripeness, such as soluble solids content (SSC), is crucial for harvesting high-quality grapes. Visible–Near-Infrared (Vis/NIR) spectroscopy enables effective, [...] Read more.
The quality of wine largely depends on the quality of wine grapes, which is determined by their chemical composition. Therefore, measuring parameters related to grape ripeness, such as soluble solids content (SSC), is crucial for harvesting high-quality grapes. Visible–Near-Infrared (Vis/NIR) spectroscopy enables effective, non-destructive detection of SSC in grapes. However, commercial Vis/NIR spectrometers are often expensive, bulky, and power-consuming, making them unsuitable for on-site applications. This article integrated the AS7265X sensor to develop a low-cost handheld IoT multispectral detection device, which can collect 18 variables in the wavelength range of 410–940 nm. The data can be sent in real time to the cloud configuration, where it can be backed up and visualized. After simultaneously removing outliers detected by both Monte Carlo (MC) and principal component analysis (PCA) methods from the raw spectra, the SSC prediction model was established, resulting in an RV2 of 0.697. Eight preprocessing methods were compared, among which moving average smoothing (MAS) and Savitzky–Golay smoothing (SGS) improved the RV2 to 0.756 and 0.766, respectively. Subsequently, feature wavelengths were selected using UVE and SPA, reducing the number of variables from 18 to 5 and 6, respectively, further increasing the RV2 to 0.809 and 0.795. The results indicate that spectral data optimization methods are effective and essential for improving the performance of SSC prediction models. The IoT Vis/NIR Spectroscopic System proposed in this study offers a miniaturized, low-cost, and practical solution for SSC detection in wine grapes. Full article
(This article belongs to the Section Chemical Sensors)
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18 pages, 2570 KiB  
Article
Applicability of Visible–Near-Infrared Spectroscopy to Predicting Water Retention in Japanese Forest Soils
by Rando Sekiguchi, Tatsuya Tsurita, Masahiro Kobayashi and Akihiro Imaya
Forests 2025, 16(7), 1182; https://doi.org/10.3390/f16071182 - 17 Jul 2025
Viewed by 262
Abstract
This study assessed the applicability of visible–near-infrared (vis-NIR) spectroscopy to predicting the water retention characteristics of forest soils in Japan, which vary widely owing to the presence of volcanic ash. Soil samples were collected from 34 sites, and the volumetric water content was [...] Read more.
This study assessed the applicability of visible–near-infrared (vis-NIR) spectroscopy to predicting the water retention characteristics of forest soils in Japan, which vary widely owing to the presence of volcanic ash. Soil samples were collected from 34 sites, and the volumetric water content was measured at eight levels of matric suction. Spectral data were processed by using the second derivative of the absorbance, and regression models were developed by using explainable boosting machine (EBM), which is an interpretable machine learning method. Although the prediction accuracy was limited owing to the small sample size and soil heterogeneity, EBM performed better under saturated conditions (R2 = 0.30), which suggests that vis-NIR spectroscopy can capture water-related features, especially under wet conditions. Importance analysis consistently selected wavelengths that were associated with organic matter and hydrated clay minerals. The important wavelengths clearly shifted from free-water bands in wet soils to mineral-related absorption bands in dry soils. These findings highlight the potential of coupling vis-NIR spectroscopy with interpretable models like EBM for estimating the hydraulic properties of forest soils. Improved accuracy is expected with larger datasets and stratified models by soil type, which can facilitate more efficient soil monitoring in forests. Full article
(This article belongs to the Section Forest Soil)
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37 pages, 7384 KiB  
Review
Visible Light Optical Coherence Tomography: Technology and Biomedical Applications
by Songzhi Wu, Shuo Wang, Baihan Li and Zhao Wang
Bioengineering 2025, 12(7), 770; https://doi.org/10.3390/bioengineering12070770 - 17 Jul 2025
Viewed by 676
Abstract
Compared to widely used near-infrared OCT (NIR-OCT) systems, visible light OCT (vis-OCT) is an emerging imaging modality that leverages visible light to achieve high-resolution, high-contrast imaging and enables detailed spectroscopic analysis of biological tissues. In this review, we provide an overview of the [...] Read more.
Compared to widely used near-infrared OCT (NIR-OCT) systems, visible light OCT (vis-OCT) is an emerging imaging modality that leverages visible light to achieve high-resolution, high-contrast imaging and enables detailed spectroscopic analysis of biological tissues. In this review, we provide an overview of the state-of-the-art technology development and biomedical applications of vis-OCT. We also discuss limitations and future perspectives for advancing vis-OCT. Full article
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28 pages, 6267 KiB  
Article
Detection of Pine Wilt Disease Using a VIS-NIR Slope-Based Index from Sentinel-2 Data
by Jian Guo, Ran Kang, Tianhe Xu, Caiyun Deng, Li Zhang, Siqi Yang, Guiling Pan, Lulu Si, Yingbo Lu and Hermann Kaufmann
Forests 2025, 16(7), 1170; https://doi.org/10.3390/f16071170 - 16 Jul 2025
Viewed by 288
Abstract
Pine wilt disease (PWD), caused by Bursaphelenchus xylophilus Steiner & Buhrer (pine wood nematodes, PWN), impacts forest carbon sequestration and climate change. However, satellite-based PWD monitoring is challenging due to the limited spatial resolution of Sentinel’s MSI sensor, which reduces its sensitivity to [...] Read more.
Pine wilt disease (PWD), caused by Bursaphelenchus xylophilus Steiner & Buhrer (pine wood nematodes, PWN), impacts forest carbon sequestration and climate change. However, satellite-based PWD monitoring is challenging due to the limited spatial resolution of Sentinel’s MSI sensor, which reduces its sensitivity to subtle biochemical alterations in foliage. We have, therefore, developed a slope product index (SPI) for effective detection of PWD using single-date satellite imagery based on spectral gradients in the visible and near-infrared (VNIR) range. The SPI was compared against 15 widely used vegetation indices and demonstrated superior robustness across diverse test sites. Results show that the SPI is more sensitive to changes in chlorophyll content in the PWD detection, even under potentially confounding conditions such as drought. When integrated into Random Forest (RF) and Back-Propagation Neural Network (BPNN) models, SPI significantly improved classification accuracy, with the multivariate RF model achieving the highest performance and univariate with SPI in BPNN. The generalizability of SPI was validated across test sites in distinct climate zones, including Zhejiang (accuracyZ_Mean = 88.14%) and Shandong (accuracyS_Mean = 78.45%) provinces in China, as well as Portugal. Notably, SPI derived from Sentinel-2 imagery in October enables more accurate and timely PWD detection while reducing field investigation complexity and cost. Full article
(This article belongs to the Section Forest Inventory, Modeling and Remote Sensing)
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21 pages, 687 KiB  
Review
Fungi in Horticultural Crops: Promotion, Pathogenicity and Monitoring
by Quanzhi Wang, Yibing Han, Zhaoyi Yu, Siyuan Tian, Pengpeng Sun, Yixiao Shi, Chao Peng, Tingting Gu and Zhen Li
Agronomy 2025, 15(7), 1699; https://doi.org/10.3390/agronomy15071699 - 14 Jul 2025
Viewed by 566
Abstract
In this review, we aim to provide a comprehensive overview of the roles of fungi in horticultural crops. Their beneficial roles and pathogenic effects are investigated. In addition, the recent advancements in fungal detection and management strategies (especially the use of spectral analysis) [...] Read more.
In this review, we aim to provide a comprehensive overview of the roles of fungi in horticultural crops. Their beneficial roles and pathogenic effects are investigated. In addition, the recent advancements in fungal detection and management strategies (especially the use of spectral analysis) are summarized. Beneficial fungi, including plant growth-promoting fungi (PGPF), ectomycorrhizal fungi (ECM), and arbuscular mycorrhizal fungi (AMF), enhance nutrient uptake, promote root and shoot development, improve photosynthetic efficiency, and support plant resilience against biotic and abiotic stresses. Additionally, beneficial fungi contribute to flowering, seed germination, and disease management through biofertilizers, microbial pesticides, and mycoinsecticides. Conversely, pathogenic fungi cause significant diseases affecting roots, stems, leaves, flowers, and fruits, leading to crop yield losses. Advanced spectral analysis techniques, such as Fourier Transform Infrared Spectroscopy (FTIR), Near-Infrared Spectroscopy (NIR), Raman, and Visible and Near-Infrared Spectroscopy (Vis-NIR), alongside traditional methods like Polymerase Chain Reaction (PCR) and Enzyme-Linked Immunosorbent Assay (ELISA), have shown promise in detecting and managing fungal pathogens. Emerging applications of fungi in sustainable agriculture, including biofertilizers and eco-friendly pest management, are discussed, underscoring their potential to enhance crop productivity and mitigate environmental impacts. This review provides a comprehensive understanding of the complex roles of fungi in horticulture and explores innovative detection and management strategies. Full article
(This article belongs to the Special Issue Microorganisms in Agriculture—Nutrition and Health of Plants)
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11 pages, 1538 KiB  
Article
Feasibility of Near-Infrared Spectroscopy for Monitoring Tissue Oxygenation During Uterus Transplantation and Hysterectomy
by Jeremy Applebaum, Dan Zhao, Nawar Latif and Kathleen O’Neill
J. Clin. Med. 2025, 14(14), 4832; https://doi.org/10.3390/jcm14144832 - 8 Jul 2025
Viewed by 276
Abstract
Background/Objective: Thrombosis is the leading cause of graft failure and immediate hysterectomy following uterus transplantation (UTx). Currently, there is no standardized method for real-time assessment of UTx graft perfusion. This feasibility study aims to evaluate the utility of a near-infrared spectroscopy (NIRS) probe [...] Read more.
Background/Objective: Thrombosis is the leading cause of graft failure and immediate hysterectomy following uterus transplantation (UTx). Currently, there is no standardized method for real-time assessment of UTx graft perfusion. This feasibility study aims to evaluate the utility of a near-infrared spectroscopy (NIRS) probe for non-invasive monitoring of local cervical tissue oxygenation (StO2) during UTx. As proof-of-concept for the NIRS device, cervical StO2 was also measured during non-donor hysterectomy and bilateral salpingo-oophorectomy to establish its capacity to reflect perfusion changes corresponding to vascular ligation. Methods: The ViOptix T. Ox Tissue Oximeter NIRS probe was attached to four uterine cervices during hysterectomy procedures and three separate donor cervices during UTx. Real-time StO2 measurements were recorded at critical surgical steps: baseline, ovarian vessel ligation, contralateral ovarian vessel ligation, uterine vessel ligation, contralateral uterine vessel ligation, and colpotomy for hysterectomy; donor internal iliac vein anastomosis to recipient external iliac vein, donor internal iliac artery anastomosis to recipient external iliac artery, contralateral donor internal iliac vein anastomosis to recipient external iliac vein, contralateral donor internal iliac artery anastomosis to recipient external iliac artery, and donor and recipient vagina anastomosis for UTx. Results: During hysterectomy, average StO2 levels sequentially decreased: 70.2% (baseline), 56.7% (ovarian vessel ligation), 62.1% (contralateral ovarian vessel ligation), 50.5% (uterine vessel ligation), 35.8% (contralateral uterine vessel ligation), and 8.5% (colpotomy). Conversely, during UTx, StO2 progressive increased with each anastomosis: 8.9% (internal iliac vein- external iliac vein), 27.9% (internal iliac artery-external iliac artery), 56.9% (contralateral internal iliac vein-contralateral external iliac vein), 65.9% (contralateral internal iliac artery-contralateral external iliac artery), and 65.2% (vaginal anastomosis). Conclusions: The inverse correlation between StO2 and vascular ligation during hysterectomy and the progressive rise in StO2 during UTx suggests that cervical tissue oximetry may serve as a non-invasive modality for monitoring uterine graft perfusion. Further studies are warranted to determine whether these devices complement current assessments of uterine graft viability and salvage thrombosed grafts. Full article
(This article belongs to the Special Issue New Advances in Uterus and Ovarian Transplantation: 2nd Edition)
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20 pages, 1935 KiB  
Article
Residual Attention Network with Atrous Spatial Pyramid Pooling for Soil Element Estimation in LUCAS Hyperspectral Data
by Yun Deng, Yuchen Cao, Shouxue Chen and Xiaohui Cheng
Appl. Sci. 2025, 15(13), 7457; https://doi.org/10.3390/app15137457 - 3 Jul 2025
Viewed by 307
Abstract
Visible and near-infrared (Vis–NIR) spectroscopy enables the rapid prediction of soil properties but faces three limitations with conventional machine learning: information loss and overfitting from high-dimensional spectral features; inadequate modeling of nonlinear soil–spectra relationships; and failure to integrate multi-scale spatial features. To address [...] Read more.
Visible and near-infrared (Vis–NIR) spectroscopy enables the rapid prediction of soil properties but faces three limitations with conventional machine learning: information loss and overfitting from high-dimensional spectral features; inadequate modeling of nonlinear soil–spectra relationships; and failure to integrate multi-scale spatial features. To address these challenges, we propose ReSE-AP Net, a multi-scale attention residual network with spatial pyramid pooling. Built on convolutional residual blocks, the model incorporates a squeeze-and-excitation channel attention mechanism to recalibrate feature weights and an atrous spatial pyramid pooling (ASPP) module to extract multi-resolution spectral features. This architecture synergistically represents weak absorption peaks (400–1000 nm) and broad spectral bands (1000–2500 nm), overcoming single-scale modeling limitations. Validation on the LUCAS2009 dataset demonstrated that ReSE-AP Net outperformed conventional machine learning by improving the R2 by 2.8–36.5% and reducing the RMSE by 14.2–69.2%. Compared with existing deep learning methods, it increased the R2 by 0.4–25.5% for clay, silt, sand, organic carbon, calcium carbonate, and phosphorus predictions, and decreased the RMSE by 0.7–39.0%. Our contributions include statistical analysis of LUCAS2009 spectra, identification of conventional method limitations, development of the ReSE-AP Net model, ablation studies, and comprehensive comparisons with alternative approaches. Full article
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