Search Results (66)

Ticks are important parasites of economic and public health because of their ability to transmit zoonotic diseases. Tick-borne encephalitis virus (TBEV), now officially Orthoflavivirus encephalitidis, is a Flavivirus with five main subtypes of which three, the European (TBEV-EU), the Siberian (TBEV-Sib), and the Far-Eastern subtypes (TBEV-FE), are supposedly circulate in Latvia. Several hard tick species are involved in TBEV circulation and transmission in nature. This study set out to describe the genetic landscape of TBEV subtypes in Latvian tick populations. In 2019 and 2021 to 2023, a total of 3026 ticks were collected in three Latvian regions, with Ixodes ricinus as the dominant species (2822 specimens), followed by Ixodes persulcatus (200 specimens) and Dermacentor reticulatus (4 specimens). Ticks were morphologically identified, pooled, and screened for TBEV RNA by RT-qPCR. TBEV of positive tick pools were isolated and genetically characterized by genome sequencing. Our study demonstrates the prevalence of two TBEV subtypes in Latvia with specific spatial patterning. In the sympatric Vidzeme region, these subtypes display a preferential species association of TBEV-EU with Ixodes ricinus and TBEV-Sib with Ixodes persulcatus. Phylogeographic analysis suggests independent introductions of multiple genotypes from both subtypes. Further investigations are necessary to better understand the natural transmission and the medical importance of these TBEVs. Full article

Anthracnose, predominantly caused by Colletotrichum fructicola, severely reduces yield in Fragaria × ananassa production. We assessed ensemble machine learning (ML) frameworks to improve genomic prediction (GP) of resistance using a training population of 300 individuals from six full-sib families. Genotyping with the Axiom^® 50K FanaSNP array and phenotyping by AUDPC after artificial inoculation enabled evaluation of five algorithms—G-BLUP, LASSO, LightGBM, Random Forest, and XGBoost—combined with informed feature selection and resampling-based data augmentation (3×, 5×). Ensemble ML models consistently outperformed linear approaches, with Random Forest, LightGBM, and XGBoost achieving the highest accuracies. Marker prioritization revealed that a reduced SNP panel of ~200 markers provided near-maximal predictive performance (R² up to 0.991), demonstrating that compact subsets can support cost-efficient GP. Data augmentation, implemented through the resampling of existing observations rather than the creation of new alleles, improved statistical power and model stability under limited sample sizes. Collectively, this study demonstrates that (i) ensemble ML models deliver superior accuracy for predicting polygenic resistance, (ii) small SNP panels can achieve high efficiency, and (iii) augmentation enhances robustness in resource-constrained breeding populations. These findings establish a scalable and breeder-oriented GP pipeline to accelerate the development of anthracnose-resistant strawberry cultivars. Full article

Background/Objectives: Autism spectrum disorder (ASD) is frequently associated with self-injurious behaviors, posing significant risks to individuals and considerable challenges for families and professionals. While various interventions have been proposed, evidence regarding their relative effectiveness remains fragmented. The general aim of this study was to perform a narrative review to analyze effective non-pharmacological interventions targeting self-injurious behaviors (SIBs) in autistic children and adolescents, addressing the following research question: Which non-pharmacological interventions are effective in reducing self-injurious behaviors in autistic children and adolescents, and under what conditions? The review focused on identifying treatment types, contexts of implementation, and outcome efficacy. Methods: This review was conducted based on a search in WoS, SCOPUS and PubMed databases. According to the PICOS criteria, we included studies involving children and adolescents with ASD and interventions for self-injurious behaviors. We compared different types of interventions and evaluated outcomes in terms of reduction in SIBs. Eligible studies were those reporting quantitative or qualitative outcomes on SIB interventions, published within the past 10 years. Results: Thirteen studies met the inclusion criteria. The interventions included applied behavior analysis (ABA), cognitive behavioral therapy (CBT), sensory integration therapy, and pharmacology. The reported outcomes generally indicated reductions in the frequency and severity of self-injurious behaviors. However, many studies lacked long-term follow-up data, and few addressed the generalization of treatment effects. Methodological variability limited both the comparability across studies and the generalization of results. Conclusions: This review emphasized a multidisciplinary, individualized approach to treating self-injurious behaviors in autistic youth. ABA emerged as the most effective intervention, while CBT proved beneficial for higher-functioning adolescents, and sensory therapies addressed specific challenges. Combined treatments showed promise, and family involvement and long-term research remain essential. Full article

Germplasm improvement is essential for maize breeding. Currently, intra-heterotic-group crossing is the major method for germplasm improvement, while inter-heterotic-group crossing is also used in breeding but not in a systematic way. In this study, five inbred lines from four heterotic groups were used to develop a connected segregating population through inter-heterotic-group line crossing (CSPIC), which comprised 5 subpopulations with 535 doubled haploid (DH) lines and 15 related test-cross populations including 1568 hybrids. Significant genetic variation was observed in most subpopulations, with several DH populations exhibiting superior phenotypes regarding traits such as plant height (PH), ear height (EH), days to anthesis (DTA), and days to silking (DTS). Notably, 10.8% of hybrids in the population POP5/C229 surpassed the high-yielding hybrid ND678 (CK). To reduce field planting costs and quickly screen for the best inter-heterotic-group DH lines and test-cross hybrids, we assessed the accuracy of genomic selection (GS) for within- and between-population predictions in the DH populations and the test-cross populations. Within the DH or the hybrid population, the prediction accuracy varied across populations and traits, with an average hybrid yield prediction accuracy of 0.41, reaching 0.54 in POP5/Z58. In the cross DH population predictions, the prediction accuracy of the half-sib population exceeded that of the non-sib cross population prediction, with the highest accuracy observed when the non-shared parents were from the same heterotic group, and the average phenotypic prediction accuracies of POP3 predicting POP2 and POP2 predicting POP3 were 0.54 and 0.45, respectively. In the cross hybrid population predictions, the accuracy was highest when both the training and the test sets came from the same DH populations, with an average accuracy of 0.43. The proportion of shared polymorphisms with respect to SNPs between the training and the test sets (PSP) exhibited a significant and strong correlation with the prediction accuracy of cross population prediction. This study demonstrates the feasibility of creating new heterotic groups through inter-heterotic-group crossing in germplasm improvement, and some cross population prediction patterns exhibited excellent prediction accuracy. Full article

Nonsuicidal self-injurious behaviour (SIB) is a debilitating manifestation of physical aggression commonly observed across neurodevelopmental, psychiatric, and genetic disorders. This behaviour arises from a multifactorial aetiology involving genetic predispositions, epigenetic modifications, neurotransmitter dysregulation, and environmental stressors. Dysregulation in dopaminergic, serotonergic, glutamatergic, and GABAergic systems has been implicated in the pathophysiology of SIB, alongside structural and functional abnormalities within fronto-limbic-striatal circuits. These disruptions impair key processes, such as emotional regulation, reward processing, and behavioural inhibition, contributing to the emergence and reinforcement of SIB. Advances in preclinical research using genetic, lesion-based, pharmacological, and environmental animal models have been instrumental in elucidating the molecular and neurocircuitry underpinnings of SIB. Emerging neuromodulation therapies targeting critical nodes within the fronto-limbic-striatal network, particularly deep brain stimulation, have shown promise in treating severe, refractory SIB and improving quality of life. This review integrates current evidence from clinical studies, molecular research, and preclinical models to provide a comprehensive overview of the pathophysiology of SIB and therapeutic approaches. By focusing on the molecular mechanisms and neural circuits underlying SIB, we highlight the translational potential of emerging pharmacological and neuromodulatory therapies. A deeper understanding of these pathways will pave the way for precision-based interventions, bridging the gap between molecular research and clinical applications in SIB and related conditions. Full article

Background: In 1994, the first Spanish study on patients with self-inflicted burns (SIB) was published, showing a prototypical profile of a patient with SIB: adult male, unmarried and, in 75% of the cases, with a psychiatric background. In addition, SIB accounted for 1.98% of the total admissions in a Burns Unit between 1983 and 1991, a lower percentage than other European studies. The present study aims to replicate this work, updating this profile and comparing it with the current profile. Methods: We compared the clinical and socio-demographic characteristics of 67 patients admitted during 1983–1991 (Study I) with those of 36 patients admitted during 2010–2015 (Study II). Results: It was observed that the percentage of patients with SIB admitted to the Burns Unit was lower in Study II than in Study I (1.45% vs. 1.98%). Significant age differences were identified (t₍₁₀₁₎ = −2.074, p = 0.041, 95% CI [−11.739, −0.261]). Similarly, there were statistically significant differences in several clinical characteristics, such as psychiatric history (X² = 11.591, p = 0.001), the occurrence of previous autolytic attempts (X² = 7.714, p = 0.007), the place where the incident occurred (X² = 11.647, p = 0.020), the etiology of the burn (X² = 13.142, p = 0.004), and triggers (X² = 6.420, p = 0.036). Conclusions: Several differences have arisen between the two studies, mainly related to the specific characteristics of SIB (e.g., etiology, triggering cause, and place of the incident), possibly attributable to the social changes that have occurred in the last 20 years. These results will add to our knowledge and will stress various precipitating factors that may lead to SIB, with the final goal of designing preventive strategies. Full article

Microbial inoculation plays a crucial role in shaping plant physiological and biochemical responses, influencing growth, secondary metabolism, and stress-related markers. This study investigates the effects of PAH-degrading microorganisms (Pseudomonas putida, Sphingobium yanoikuyae, and Rhodotorula sphaerocarpa) on the growth, secondary metabolism, photosynthetic pigment, and stress-related biochemical markers of silver birch (Betula pendula Roth) seedlings from two half-sib families grown hydroponically. Results demonstrate family-dependent variations in the response to microbial treatments. In family 73, the growth of both shoots and roots was inhibited by certain microbial treatments, along with a decrease in key biochemical markers such as phenolic content and carotenoids. Conversely, family 86 showed no growth inhibition and exhibited improvements in some biochemical markers, including flavonoids and chlorophyll. Stress indicators, such as malondialdehyde (MDA) and soluble sugars, displayed contrasting patterns between families, with increased MDA observed in family 73 under certain microbial treatments. In contrast, family 86 did not exhibit an increase in MDA, suggesting differences in stress mitigation. Soluble sugars were generally reduced in family 73. Antioxidant enzyme activity further highlighted these family-specific responses, with variations in enzymes like ascorbate peroxidase (APX) and guaiacol peroxidase (POX) across treatments. Notably, significant interactions between family and microbial treatments were observed for several oxidative stress enzymes, underscoring the role of genotype in shaping the response to microbial stress. These findings highlight the genotype-dependent interactions between microbial inoculation and plant secondary metabolism, providing insights into the role of specifically selected microbial inoculation in stress mitigation and growth regulation. Full article

With the growing interest in reducing CO₂ emissions to combat climate change, humanity is turning to green or renewable sources of electricity. There are numerous issues associated with the development of these sources. One of the key aspects of renewable energy sources is their problematic controllability, namely the control of energy production over time. Renewable sources are also associated with issues of recycling, utilization in different geographical zones, environmental impact within the required area, and so on. One of the most discussed issues today, however, is the question of efficient use of the energy produced from these sources. There are several different approaches to storing renewable energy, e.g., supercapacitors, flywheels, batteries, PCMs, pumped-storage hydroelectricity, and flow batteries. In the commercial sector, however, mainly due to acquisition costs, these options are narrowed down to only one concept: storing energy using an electrochemical storage device—batteries. Nowadays, lithium-ion batteries (LIBs) are the most widespread battery type. Despite many advantages of LIB technology, the availability of materials needed for the production of these batteries and the associated costs must also be considered. Thus, this battery type is not very ideal for large-scale stationary energy storage applications. Sodium-ion batteries (SIBs) are considered one of the most promising alternatives to LIBs in the field of stationary battery storage, as sodium (Na) is the most abundant alkali metal in the Earth’s crust, and the cell manufacturing process of SIBs is similar to that of LIBs. Unfortunately, considering the physical and electrochemical properties of Na, different electrode materials, electrolytes, and so on, are required. SIBs have come a long way since they were discovered. This review discusses the latest developments regarding the materials used in SIB technology. Full article

With the growing market of secondary batteries for electric vehicles (EVs) and grid-scale energy storage systems (ESS), driven by environmental challenges, the commercialization of sodium-ion batteries (SIBs) has emerged to address the high price of lithium resources used in lithium-ion batteries (LIBs). However, achieving competitive energy densities of SIBs to LIBs remains challenging due to the absence of high-capacity anodes in SIBs such as the group-14 elements, Si or Ge, which are highly abundant in LIBs. This review presents potential candidates in metal pnictogenides as promising anode materials for SIBs to overcome the energy density bottleneck. The sodium-ion storage mechanisms and electrochemical performance across various compositions and intrinsic physical and chemical properties of pnictogenide have been summarized. By correlating these properties, strategic frameworks for designing advanced anode materials for next-generation SIBs were suggested. The trade-off relation in pnictogenides between the high specific capacities and the failure mechanism due to large volume expansion has been considered in this paper to address the current issues. This review covers several emerging strategies focused on improving both high reversible capacity and cycle stability. Full article

Glycosylphosphatidylinositol (GPI) biosynthesis defect 11 (GPIBD11), part of the heterogeneous group of congenital disorders of glycosylation, is caused by biallelic pathogenic variants in PIGW. This rare disorder has previously been described in only 12 patients. We report four novel patients: two sib fetuses with congenital anomalies affecting several organs, including the heart; a living girl with tetralogy of Fallot, global developmental delay, behavioral abnormalities, and atypic electroencephalography (EEG) without epilepsy; a girl with early-onset, treatment-resistant seizures, developmental regression, and recurrent infections, that ultimately passed away prematurely due to pneumonia. We also illustrate evolving facial appearance and biochemical abnormalities. We identify two novel genotypes and the first frameshift variant, supporting a loss-of-function pathogenic mechanism. By merging our cohort with patients documented in the literature, we deeply analyzed the clinical and genetic features of 16 patients with PIGW-related disorder, revealing a severe multisystemic condition deserving complex management and with uncertain long-term prognosis. We consider the role of PIGW within the critical 17q12 region, which is already associated with genomic disorders caused by deletion or duplication and characterized by variable expressivity. Finally, we discuss PIGW dosage effects and a second hit hypothesis in human development and disease. Full article

Soil salinity adversely affects plant growth and development, reducing the yield of most crops, including wheat. The highly salt-tolerant wheat germplasm lines W4909 and W4910 were derived from a cross between two moderately salt-tolerant lines, the Chinese Spring (CS)/Thinopyrum junceum disomic addition line AJDAj5 (AJ) and the Ph-inhibitor line (Ph-I) derived from CS/Aegilops speltoides. Molecular markers for gene introgressions in W4909 and W4910 were not reported. Four sequence-tagged site (STS) molecular markers of Ph-I were developed and tested in the above-mentioned lines and the F₂ progenies of the two crosses, Anza (AZ) × 4740 (sib of W4910) and Yecora Rojo (YR) × 4728 (sib of W4909). Additionally, homogeneity was assessed in several derivatives of W4909, 4728, W4910, and 4740 using the four markers. The four STS markers are not associated with salt tolerance, but they provide an indication of the transfer of chromatin in 3B chromosome of Ae. speltoides via Ph-I. Moreover, salt tolerance and leaf sodium concentration were determined in CS, AJ, Ph-I, 7151 (progeny of W4909), 7157 (progeny of W4910), AZ, and YR under salt treatment and control. Surprisingly, AJ had the lowest leaf sodium concentration under the control and salt treatment, indicating greater sodium exclusion than that in CS, AZ, and YR. This low level of leaf sodium concentration was heritable from 4740 to its hybrid progenies. On the other hand, the higher leaf sodium concentration, indicative of the tissue tolerance to salinity in Ph-I, had been inherited by both W4909 and W4910 and then transmitted to their hybrid progenies. One offspring line each in both W4909 and W4910 (7762 and 7159, respectively) were homozygous for the three molecular markers and lacked the marker psr1205 of Su1-Ph1 gene, making them better materials than the original lines for future research on, for example, whole-genome sequencing and gene mining. The implications of these findings for the utilization of W4909 and W4910 in breeding salt-tolerant wheat cultivars are discussed. Full article

The dendrochronological parameters of 97 pedunculate oak (Quercus robur L.) trees including 20 plus trees (142-year-old on average) and four half-sib families for four of them were analyzed considering also specifically years of the most severe droughts that were identified using average monthly air temperature and precipitation data. The tree-ring width (TRW) was mostly affected by air temperature that had the largest cross-dating indices (CDI), up to 78% maximum. However, the 32-year Brückner–Egeson–Lockyer cycle (a climatic cycle of approximately 30–40 years that correlates with sunspot activity) was more reflected in the TRW dynamics in plus trees than precipitation and air temperature. A high-frequency of abnormal TRW was clearly observed during drought periods and in the following 2–3 years. Tree radial-growth reduction due to drought stress varied significantly between families. The resistance to drought based on TRW was higher in the maternal plus oak trees than in progeny. Drought resulted in reduced growth during the subsequent year(s); hence, the minimum growth occurred after the actual climate event. Autumn–winter precipitation and weather conditions were of the greatest importance at the onset of active vegetation in April and May. The influence of air temperature on oak growth was the largest in March (r = 0.39, p < 0.05). The strongest positive correlation between precipitation and growth (with r up to 0.38) was observed in May 2023. Plus trees had a high adaptive potential due to the stability of radial growth during drought with high resistance (Rt = 1.29) and resilience (Rs = 1.09) indexes. The offspring of families 1 (Rt = 0.89, Rs = 0.89) and 2 (Rt = 1.04, Rs = 0.87) had similar resistance and resilience, but the recovery indices (Rc) for offspring in families 1, 2 and 3 exceeded the recovery values for plus trees. For offspring in families 3 and 4, the index values were lower. The revealed responses of wood growth of plus trees to climatic parameters estimated as resistance (Rt), resilience (Rs) and recovery (Rc) indexes and similar responses in their progeny can be used in breeding pedunculate oak for wood growth productivity and drought resistance. Full article

Disease outbreaks in aquaculture have recently intensified. In particular, visceral white-nodules disease, caused by Pseudomonas plecoglossicida, has severely hindered the small yellow croaker (Larimichthys polyactis) aquaculture industry. However, research on this disease is limited. To address this gap, the present study employed a 100K SNP chip to genotype individuals from an F1 full-sib family, identify single nucleotide polymorphisms (SNPs), and construct a genetic linkage map for this species. A high-density genetic linkage map spanning a total length of 1395.72 cM with an average interval of 0.08 cM distributed across 24 linkage groups was obtained. Employing post-infection survival time as an indicator of disease resistance, 13 disease resistance-related quantitative trait loci (QTLs) were detected, and these regions included 169 genes. Functional enrichment analyses pinpointed 11 candidate disease resistance-related genes. RT-qPCR analysis revealed that the genes of chmp1a and arg1 are significantly differentially expressed in response to P. plecoglossicida infection in spleen and liver tissues, indicating their pivotal functions in disease resistance. In summary, in addition to successfully constructing a high-density genetic linkage map, this study reports the first QTL mapping for visceral white-nodules disease resistance. These results provide insight into the intricate molecular mechanisms underlying disease resistance in the small yellow croaker. Full article

Durum wheat (DW) is one of the major crops grown in the Mediterranean area, a climate-vulnerable region where the increase in day/night (d/n) temperature is severely threatening DW yield stability. In order to improve DW heat tolerance, the introgression of chromosomal segments derived from the wild gene pool is a promising strategy. Here, four DW-Thinopyrum spp. near-isogenic recombinant lines (NIRLs) were assessed for their physiological response and productive performance after intense heat stress (IH, 37/27 °C d/n) had been applied for 3 days at anthesis. The NIRLs included two primary types (R5, R112), carriers (+) of a differently sized Th. ponticum 7el1L segment on the DW 7AL arm, and two corresponding secondary types (R69-9/R5, R69-9/R112), possessing a Th. elongatum 7EL segment distally inserted into the 7el1L ones. Their response to the IH stress was compared to that of corresponding non-carrier sib lines (−) and the heat-tolerant cv. Margherita. Overall, the R112+, R69-9/R5+ and R69-9/R112+ NIRLs exhibited a tolerant behaviour towards the applied stress, standing out for the maintenance of leaf relative water content but also for the accumulation of proline and soluble sugars in the flag leaf and the preservation of photosynthetic efficiency. As a result, all the above three NIRLs (R112+ > R69-9/R5+ > R69-9/R112+) displayed good yield stability under the IH, also in comparison with cv. Margherita. R112+ particularly relied on the strength of spike fertility/grain number traits, while R69-9/R5+ benefited from efficient compensation by the grain weight increase. This work largely confirmed and further substantiated the value of exploiting the wild germplasm of Thinopyrum species as a useful source for the improvement of DW tolerance to even extreme abiotic stress conditions, such as the severe heat treatment throughout day- and night-time applied here. Full article

The flowering period of rice significantly impacts variety adaptability and yield formation. Properly shortening the reproductive period of rice varieties can expand their ecological range without significant yield reduction. Targeted genome editing, like CRISPR/Cas9, is an ideal tool to fine-tune rice growth stages and boost yield synergistically. In this study, we developed a CRISPR/Cas9-mediated multiplex genome-editing vector containing five genes related to three traits, Hd2, Ghd7, and DTH8 (flowering-stage genes), along with the recessive rice blast resistance gene Pi21 and the aromatic gene BADH2. This vector was introduced into the high-quality japonica rice variety in Zhejiang province, Jiahe212 (JH212), resulting in 34 T₀ plants with various effective mutations. Among the 17 mutant T₁ lines, several displayed diverse flowering dates, but most exhibited undesirable agronomic traits. Notably, three homozygous mutant lines (JH-C15, JH-C18, and JH-C31) showed slightly earlier flowering dates without significant differences in yield-related traits compared to JH212. Through special Hyg and Cas marker selection of T₂ plants, we identified seven, six, and two fragrant glutinous plants devoid of transgenic components. These single plants will serve as sib lines of JH212 and potential resources for breeding applications, including maintenance lines for indica–japonica interspecific three-line hybrid rice. In summary, our research lays the foundation for the creation of short-growth-period CMS (cytoplasmic male sterility, CMS) lines, and also provides materials and a theoretical basis for indica–japonica interspecific hybrid rice breeding with wider adaptability. Full article