Search Results (54)

This study aimed to investigate the effects of dietary ISF:SF ratio on reproductive performance, biochemical parameters, colostrum composition, and fecal microbial composition in gestating sows. A total of 30 multiparous sows were randomly allocated to three dietary treatment groups: 8% inulin diet (ISF:SF 1.14, Inulin group), 8% cotton fiber diet (ISF:SF 6.61, Cotton group), and 4% inulin + 4% cotton fiber diet (ISF:SF 2.37, Inulin + Cotton group). The results showed that, compared to the other groups, the Inulin group had a significantly higher number of piglets born alive, as well as increased plasma concentrations of acetic acid, butyric acid, hexanoic acid, and total short-chain fatty acids (SCFAs) (p < 0.05). Sows in the Inulin group had significantly lower fecal scores than those in the other groups from days 81 to 85 and from days 106 to 110 of gestation (p < 0.05). On day 90 of gestation, the serum levels of albumin, urea, uric acid, calcium, and phosphorus in the Inulin group were significantly lower than those in the other groups (p < 0.05). Additionally, the serum levels of triacylglycerol in the Inulin + Cotton Fiber group were significantly higher than those in the other groups (p < 0.05). However, there were no significant differences in serum concentrations of total protein, creatinine, glucose, cholesterol, HDL-cholesterol, or LDL-cholesterol among the treatments (p > 0.05). On day 110 of gestation, the serum content of urea, uric acid, calcium, and phosphorus in the Inulin group was significantly lower than those in the other groups (p < 0.05). Furthermore, the plasma levels of uric acid, triacylglycerol, and HDL-cholesterol in the Inulin + Cotton Fiber group were significantly higher than those in the Cotton Fiber group (p < 0.05), while the creatinine levels in the Inulin group were higher than those in the other groups (p < 0.05). No differences were observed in the composition and immune performance of colostrum (p > 0.05). Microbial sequencing analysis showed that dietary inulin supplementation to increase the proportion of soluble fiber significantly decreased the abundance of Firmicutes, Clostridia, Clostridiales, Lachnospiraceae, Streptococcaceae, and Streptococcus (p < 0.05). The abundance of short-chain fatty acid-producing microorganisms—Bacteroidetes, Bacteroidia, Bacteroidales, and Muribaculaceae—was significantly increased (p < 0.05). The results indicated that inulin supplementation decreased the dietary ISF:SF ratio, significantly alleviated constipation in sows, increased the number of piglets born alive, regulated intestinal microecology, and increased the plasma concentrations of short-chain fatty acids (SCFAs), including acetic, propionic, and butyric acids. Full article

Background: The Jinwu pig is a novel breed created by crossbreeding Jinhua and Duroc pigs, displaying superior meat quality, strong adaptability to coarse feed, high production performance, and a rapid growth rate. However, research on its reproductive traits and genomic characteristics has not been systematically reported. Methods: In this study, we investigated the genetic basis of reproductive traits in Jinwu pigs us-ing a genome-wide association study. We analyzed 2831 breeding records from 516 Jinwu sows to evaluate the effects of fixed factors (farrowing season, parity, and mated boar) on six reproductive traits: the total number of births (TNB), number born alive (NBA), number of healthy offspring produced (NHOP), weak litter size (WLS), number of stillbirths (NS), and number of mummies (NM). Results: A total of 771 genome-wide significant single-nucleotide polymorphisms (SNPs) and ten potential candidate genes associated with pig reproductive traits were identified: VOPP1, PGAM2, TNS3, LRFN5, ORC1, CC2D1B, ZFYYE9, TUT4, DCN, and FEZF1. TT-genotype-carrier individuals of the pleiotropic SNP rs326174997 exhibited significantly higher TNB, NBA, and NHOP trait-related phenotypic values. Conclusions: These findings provide a foundation for the reproductive breeding of Jinwu pigs and offer new insights into molecular genetic breeding in pigs. Full article

The experiment was conducted to determine the interaction effects of parity and DFM supplementation from early gestation (G 21) to lactation (L 21) on reproductive performance, apparent total tract digestibility (ATTD), colostrum IgA and IgG, and mature milk composition. Three hundred pregnant sows were blocked by parity (2, 3, 4, 5, and 6–9) and randomly assigned to two experimental diets in a randomized complete block design, with a control (CON, n = 150) group and direct-fed microbial (DFM, n = 150) group. The DFM contained 5 × 10⁷ cfu/g of Bacillus subtilis and 2 × 10⁶ cfu/g of Lactobacillus spp. Reproductive traits recorded included total born (TB), born alive (BA), litter weight (LW), piglets born dead (PBD) weaning weight (WW), number of weaning pig (NWP), and PWM. Two separate 14 d ATTD trials were conducted on G86 to G100 and L7 to L21. Colostrum samples were collected at 0, 3, 6, 12, and 24 h post-partum and mature milks were collected at L7 and L14 for Ig and composition analysis, respectively. Total Ig concentrations were measured by an ELISA. The interaction between diet and parity was found on LW, colostrum IgG, milk lactose, and protein (p < 0.05). Regardless of parity, sows fed DFM had greater reproductive performance with higher BA, LS, LW, and lower in PWM (p < 0.05). DFM also improved the ATTD of organic matter (OM), crude protein (CP), and ether extracts (EE) (p < 0.05) at G100 and gross energy (GE), CP, and EE (p < 0.05) at L21. Entire IgG and 3 h post-partum IgA in colostrum were higher in DFM than in the CON diet (p < 0.05). Parity effects were seen on NWP, LW, CP, and EE, colostrum Ig at 12 and 24 post-partum, milk protein, and lactose at L7 (p < 0.05). Moreover, the parity showed linear effect on TB, BA, LW, litter size (LS), WW, total PWM, the ATTD of OM and EE, colostrum IgG at 12 h and IgA at 12 and 24 h post-partum, milk fat at L7 and L21, and milk lactose at L14 (p < 0.05). Stepwise prediction for average colostrum IgG (mg/mL) by using nutrient digestibility = −112.97 + 0.706GE(%) + 0.518CP(%) + 0.267EE(%) (n = 267, R² = 0.38, RSD = 6.7, p < 0.001). In summary, supplementing dietary DFM during early gestation through weaning had positive effects on production, the lifetime of sows, and better nutrient utilization, resulting in better milk quality and better piglet growth. Full article

The increasing volume of genome sequencing data presents challenges for traditional genome-wide prediction methods in handling large datasets. Machine learning (ML) techniques, which can process high-dimensional data, offer promising solutions. This study aimed to find a genome-wide prediction method for local pig breeds, using 10 datasets with varying SNP densities derived from imputed sequencing data of 515 Rongchang pigs and the Pig QTL database. Three reproduction traits—litter weight, total number of piglets born, and number of piglets born alive—were predicted using six traditional methods and five ML methods, including kernel ridge regression, random forest, Gradient Boosting Decision Tree (GBDT), Light Gradient Boosting Machine, and Adaboost. The methods’ efficacy was evaluated using fivefold cross-validation and independent tests. The predictive performance of both traditional and ML methods initially increased with SNP density, peaking at 800–900 k SNPs. ML methods outperformed traditional ones, showing improvements of 0.4–4.1%. The integration of GWAS and the Pig QTL database enhanced ML robustness. ML models exhibited superior generalizability, with high correlation coefficients (0.935–0.998) between cross-validation and independent test results. GBDT and random forest showed high computational efficiency, making them promising methods for genomic prediction in livestock breeding. Full article

Gestation length (GL) is a critical indicator of reproductive performance in sows and is closely associated with other reproductive traits, such as total number born (TNB) and number born alive (NBA). Despite its importance, the genetic mechanisms underlying GL and its impact on reproductive traits remain poorly understood. In this study, we investigated the relationship between GL and reproductive traits using 7013 farrowing records and conducted an imputed whole-genome sequence-based genome-wide association study (GWAS) for GL in first-parity sows, involving 3005 French Large White sows. Our findings revealed that the heritability of GL ranged from 0.22 to 0.26. Both excessively short and long GLs were associated with negative impacts on TNB, NBA, and other reproductive traits. A total of 64 SNPs exceeded the significance threshold, leading to the identification of two novel quantitative trait loci (QTLs) on chromosome 5 (QTL-1: 15.29–15.39 Mb and QTL-2: 12.86–12.94 Mb) and three promising candidate genes: TROAP, RFX4, and ADCY6. Gene ontology and KEGG pathway enrichment analyses revealed that these candidate genes are enriched in key biological processes, including ovarian steroidogenesis, the GnRH signaling pathway, and the regulation of cAMP biosynthesis, all of which are crucial for gestation and pregnancy maintenance. These findings improve our understanding of the genetic architecture of GL in sows and offer valuable genetic markers for enhancing reproductive efficiency in breeding programs. Full article

Twenty-seven gestating primiparous sows (203 ± 9.1 kg initial body weight on d 89 ± 1 of gestation) were selected to determine the effect of standardized ileal digestible (SID) sulfur-containing amino acid (SAA) intake during late gestation on whole-body nitrogen (N) retention and subsequent litter performance. Primiparous sows were assigned to one of two experimental diets that provided SAAs at 63 or 200% of the estimated requirements during late gestation (0.29 and 0.92% SID SAAs, respectively; n = 15 and 12, respectively). The diets were isoenergetic, and the SID Lys was 0.80% in both diets. Each gilt received 2.50 kg of the assigned diet between gestation d 90 and farrowing. Common lactation and nursery diets were provided to all primiparous sows after farrowing and offspring after weaning, respectively. Gilt whole-body N balance was determined between d 107 and 109 of gestation using total urine collection and fecal grab sampling. After farrowing, litters were standardized to 13 piglets and were not offered creep feed. Whole-body N retention was greater in primiparous sows fed the diet containing 0.92 vs. 0.29% SID SAAs in late gestation (27.2 vs. 19.3 ± 1.8 g/d; p < 0.05), but the number of piglets born alive, litter birth weight, subsequent piglet growth rates, and litter size at weaning were not different between the treatment groups. The post-weaning growth performance of the offspring was not influenced by maternal dietary treatment in late gestation. At farrowing, the post-absorptive plasma concentration of Tau was greater (p < 0.01) for primiparous sows fed 0.92 vs. 0.29% SID SAAs in late gestation, and offspring from primiparous sows fed 0.92% SID SAAs tended to have greater plasma homocysteine (Hcys; p = 0.066). Post-absorptive plasma AAs Ile, Leu, Val, and Tyr were greater (p < 0.05), and Ser tended to be greater (p = 0.071) in sows fed 0.92 vs. 0.29% SID SAAs. For the offspring, there were no diet effects on any of the dispensable and indispensable AA concentrations in plasma at birth, at weaning, or 3 and 6 weeks post-weaning. The primary finding is that the sow has a remarkable ability to buffer dietary AA imbalances, ensuring fetal growth even when SAA intake is below the current requirement estimates. While sufficient supplemental SAA intake is essential for the sow’s well-being, excessive SAA levels may not confer additional advantages in terms of sow or piglet growth and the production of vital metabolites. This research emphasizes the importance of meticulously balanced diets for pregnant sows to simultaneously support maternal growth and nitrogen retention, which may also have an impact on the synthesis of biomolecules linked to improving health outcomes for the offspring. Full article

(1) Background: Reproductive performance is crucial for the pork industry’s success. The Large White pig is central to this, yet the genetic factors influencing its reproductive traits are not well understood, highlighting the need for further research. (2) Methods: This study utilized Genome-Wide Association Studies to explore the genetic basis of reproductive traits in the Large White pig. We collected data from 2237 Large White sows across four breeding herds in southern China, focusing on eight reproductive traits. Statistical analyses included principal component analysis, linkage disequilibrium analysis, and univariate linear mixed models to identify significant single-nucleotide polymorphisms and candidate genes. (3) Results: Forty-five significantly related SNPs and 17 potential candidate genes associated with litter traits were identified. Individuals with the TT genotype at SNP rs341909772 showed an increase of 1.24 in the number of piglets born alive (NBA) and 1.25 in the number of healthy births (NHBs) compared with those with the CC genotype. (4) Conclusions: The SNPs and genes identified in this study offer insights into the genetics of reproductive traits in the Large White pig, potentially guiding the development of breeding strategies to improve litter size. Full article

The aim of this study was to determine the optimal SID Arg: Lys ratio for maximizing the reproductive performance, immunity and biochemical parameters of sows during gestation, the colostrum composition, and the performance of their offspring. A total of 174 multiparous sows were randomly allocated to five treatment groups varying in dietary SID Arg: Lys ratios (0.91, 1.02, 1.14, 1.25 and 1.38) through modification of the levels of Arg or alanine supplementation (the total level of nitrogen was the same in all treatments). The results showed that increasing the dietary SID Arg: Lys ratio increased the number of piglets born alive (p < 0.05, linear and quadratic). The number of stillborn piglets, the birth weight variation of born alive piglets, the birth interval (p < 0.05, linear and quadratic) and the number of mummies (p < 0.05, quadratic) reduced with increasing the dietary SID Arg: Lys ratio. Broken-line regression analysis indicated that the optimal SID Arg: Lys ratio requirement for gestating sows to maximize the number of piglets born alive was 1.25. The content of non-fat solid, total solid, protein, and energy in colostrum increased linearly and quadratically (p < 0.05) with increasing dietary SID Arg: Lys ratio. Additionally, when increasing the dietary SID Arg: Lys ratio, the concentration of IgA (p < 0.05, quadratic) and IgM (p < 0.05, linear and quadratic) of plasma increased at day 90 of gestation; IgG (p < 0.05, linear and quadratic) concentration increased at day 110 of gestation of sows. The dietary SID Arg: Lys ratio had an increasing effect (p < 0.05, linear and quadratic) on plasma insulin levels at day 90 of gestation. Furthermore, there were increases in plasma concentrations of nitric oxide and ornithine at day 110 of gestation, Arg at day 90 and 110 of gestation (p < 0.05, linear and quadratic) and total protein at day 110 of gestation (p < 0.05, linear) with increasing dietary SID Arg: Lys ratio. The results of our study indicated that increases in the dietary SID Arg: Lys ratio during gestation resulted in an increase in the number of piglets born alive, a decrease in birth intervals, and an improvement in immunity and colostrum composition. The optimal SID Arg: Lys ratio for gestating sows to maximize the number of piglets born alive was 1.25. Full article

Litter size is an important trait in pig production. But selection accuracy for this trait is relatively low, compared with production traits. This study, for the first time, investigated the improvement of genetic evaluation of reproduction traits such as litter size in pigs using data of production traits as an additional information source. The data of number of piglets born alive per litter (NBA), age at 100 kg of body weight (Age100), and lean meet percentage (LMP) in a Yorkshire population were analyzed, using either a single-trait model or the multitrait model that allows us to account for environmental correlation between reproduction and production traits in the situation that one individual has only one record for a production trait while multiple records for a reproduction trait. Accuracy of genetic evaluation using single-trait and multitrait models were assessed by model-based accuracy (R_m) and validation accuracy (R_v). Two validation scenarios were considered. One scenario (Valid_r1) was that the individuals did not have a record of NBA, but Age100 and LMP. The other (Valid_r2) was that the individuals did not have a record for all the three traits. The estimate of heritability was 0.279 for Age100, 0.371 for LMP, and 0.076 for NBA. Genetic correlation was 0.308 between Age100 and LMP, 0.369 between Age100 and NBA, and 0.022 between LMP and NBA. Compared with the single-trait model, the multitrait model including Age100 increased prediction accuracy for NBA by 3.6 percentage points in R_m and 5.9 percentage points in R_v for the scenario of Valid_r1. The increase was 1.8 percentage points in R_m and 3.8 percentage points in R_v for the scenario of Valid_r2. Age100 also gained in the multitrait model but was smaller than NBA. However, LMP did not benefit from a multitrait model and did not have a positive contribution to genetic evaluation for NBA. In addition, the multitrait model, in general, slightly reduced level bias but not dispersion bias of genetic evaluation. According to these results, it is recommended to predict breeding values using a multitrait model including growth and reproduction traits. Full article

In mink breeding, balanced selection for growth and reproductive features is essential because these traits are contradictory. The variables of total number born (TNB), number born alive (NBA), and body weight (BW) are highly valuable in terms of their importance in mink production. A comprehensive understanding of the molecular mechanisms that drive these features could offer vital insights into their genetic compositions. In the present study, the single-nucleotide polymorphism (SNP) genotypes of 219 minks were obtained via double digest restriction-site associated DNA sequencing (ddRAD-seq). Following several rounds of screening, about 2,415,121 high-quality SNPs were selected for a genome-wide association study (GWAS). The GWAS was used to determine BW and reproductive traits in pink-eyed white mink. It was suggested that SLC26A36, STXBP5L, and RPS 29 serve as potential genes for the total number of kits born (TNB), while FSCB, PDPN, NKX 2-1, NFKB 1, NFKBIA, and GABBR1 are key genes for the number born alive (NBA). Moreover, RTTN, PRPF31, MACROD1, and KYAT1 are possible BW genes based on association results and available functional data from gene and mammalian phenotype databases. These results offer essential information about the variety of mink and theoretical principles for applying mink breeds. Full article

Methyltransferase-like 23 (METTL23) is a kind of RNA methyltransferase that catalyzes the methylation transfer to the N6-adenosine of RNA, serving as one of the key mediators in this process. However, the METTL23 gene has been poorly researched in pigs. In this study, we investigated the genetic effects of METTL23 single-nucleotide polymorphism(SNPs) on reproductive traits in Kele pigs. The DNA was extracted from 228 healthy multiparous Kele sows, and Sanger sequencing revealed three SNPs, g.4804958 G > T (intron 2), g.4805082 C > T (exon 2), and g.4806821 A > G (exon 3). The polymorphism information content (PIC) for each SNP was 0.264, 0.25, and 0.354, indicating moderate polymorphism (0.25 < PIC < 0.5) and providing genetic information. Linkage disequilibrium analysis showed no strong linkage disequilibrium between the three SNPs. The association analysis revealed that in the SNP g.4804958 G > T individuals with the GG genotype had a significantly higher number of piglets born alive, litter birth weight, number of weaned piglets, and weaning litter weight compared to those with the TT genotype (p < 0.05). Individuals with the GG genotype in the SNP g.4806821 A > G group had significantly higher litter birth weight and average birth weight than those with the AA genotype (p < 0.05). The H4H4 diplotype showed significant effects on the number of piglets born alive, litter birth weight, number of weaned piglets, weaning litter weight, and weaning weight (p < 0.05). Together, the METTL23 gene could be used as a candidate gene for the selection of reproductive traits in Kele pigs. Full article

Inbreeding depression is expected to be more pronounced in fitness-related traits, such as pig litter size. Recent studies have suggested that the genetic determinism of inbreeding depression may be heterogeneous across the genome. Therefore, the objective of this study was to conduct a genomic scan of the whole pig autosomal genome to detect the genomic regions that control inbreeding depression for litter size in two varieties of Iberian pigs (Entrepelado and Retinto). The datasets consisted of 2069 (338 sows) and 2028 (327 sows) records of litter size (Total Number Born and Number Born Alive) for the Entrepelado and Retinto varieties. All sows were genotyped using the Geneseek GGP PorcineHD 70 K chip. We employed the Unfavorable Haplotype Finder software to extract runs of homozygosity (ROHs) and conducted a mixed-model analysis to identify highly significant differences between homozygous and heterozygous sows for each specific ROH. A total of eight genomic regions located on SSC2, SSC5, SSC7, SSC8, and SSC13 were significantly associated with inbreeding depression, housing some relevant genes such as FSHR, LHCGR, CORIN, AQP6, and CEP120. Full article

In Poland, despite a decline in the pig population, pork consumption invariably remains high. For this reason, it is important to search for a potential reduction in pig production costs. One of the feasible solutions is to use sows of hybrid lines. Currently, several sow lines are available on the Polish market, such as CG36 (Choice Genetics). The aim of this study was to determine the level of reproduction performance in this line considering the effect of parity and farrowing season. Additionally, coefficients of phenotypic correlations between analysed reproduction performance parameters were determined. The experimental material comprised 112 females inseminated with semen of a boar of the Excelium line (Choice Genetics), which produced 336 litters. The investigated population was characterised by a high level of reproduction traits and young age at first farrowing (AFF), while the number of piglets born alive (NBA), the number of piglets weaned per litter (NW), and the number of piglets weaned per sow per year (PWSY) reached high, economically advantageous levels. Primiparous sows produced and reared lower numbers of piglets than multiparous sows, which indicates the need to maintain an adequate herd structure, with a maximum share of gilts at 30%. No effect of the season on values of reproduction traits was found, which shows optimal environmental conditions in the animal housing where the pigs were kept. Dependencies between the analysed traits confirmed the results reported by other authors, where NBA was highly positively correlated with LW, although LW increased with an increase in NBA. No correlations were found between PWSY and the other traits. In turn, the observed coefficients of phenotypic correlations indicate that in order to reduce AFF in CG36 sows, it is necessary to control FI. Full article

Early indicator traits for swine reproduction and longevity support economical selection decision-making. Activity is a key variable impacting a sow’s herd life and productivity. Early-life activities could contribute to farrowing traits including gestation length (GL), number born alive (NBA), and number weaned (NW). Beginning at 20 weeks of age, 480 gilts were video recorded for 7 consecutive days and processed using the NUtrack system. Activity traits included angle rotated (radians), average speed (m/s), distance traveled (m), time spent eating (s), lying lateral (s), lying sternal (s), standing (s), and sitting (s). Final daily activity values were averaged across the period under cameras. Parity one data were collected for all gilts considered. Data were analyzed using linear regression models (R version 4.0.2). GL was significantly impacted by angle rotated (p = 0.03), average speed (p = 0.07), distance traveled (p = 0.05), time spent lying lateral (p = 0.003), and lying sternal (0.02). NBA was significantly impacted by time spent lying lateral (p = 0.01), lying sternal (p = 0.07), and time spent sitting (p = 0.08). NW was significantly impacted by time spent eating (p = 0.09), time spent lying lateral (p = 0.04), and time spent sitting (p = 0.007). This analysis suggests early-life gilt activities are associated with sow productivity traits of importance. Further examination of the link between behaviors compiled utilizing NUtrack and reproductive traits is necessitated to further isolate behavioral differences for potential use in selection decisions. Full article

The possible effect of body condition score (BCS) on ovarian function, sexual behavior, (i.e., females and males; appetitive and consummative), estrus, ovulation, and reproductive performance was investigated in crossbred dairy goats under extensive conditions. Based on their BCS, female goats (n = 48) were divided into two experimental groups, either with a low (LG; 1.0 ± 0.2 units; n = 26) or with a high BCS (HG: 2.5 ± 0.9 units; n = 22). Bucks n = 4; cc = 2.5. Female sexual behavior (i.e., acceptance of anogenital sniffing and approach, flight, and tail wagging) was higher in the HG (p < 0.05). In addition, bucks exposed to HG goats showed more approach and mounting attempts (p < 0.01). There were no significant differences (p > 0.05) between the groups in either the follicular diameter or size. Interestingly, although follicular volume, pregnancy rate, kidding rate, and total number of kids born alive were higher in the HG goats (p < 0.05), there were no significant differences (p < 0.05) in fetal mortality and prolificacy between the HG and LG goats. In addition, the response variables of female ovulation, total number of corpus luteum, ovulation rate, corpus luteum diameter, and luteal tissue volume were more favorable in the HG goats (p < 0.05). Our research results demonstrate that a higher BCS improves not only the reproductive responses, but also sexual behavior (i.e., female and male). Larger ovarian structures, higher ovulation rates, higher pregnancy and kidding rates, and higher prolificacy were observed in the HG goats managed under a marginal semiarid extensive production system. Full article