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The growing need for high-efficiency and reliable propulsion systems in naval applications, particularly within the evolving landscape of submarine warfare, has led to an increased interest in multiphase Permanent Magnet AC motors. This study presents a modelling and simulation approach for a 3MW, seventeen-phase Permanent Magnet AC motor designed for submarine propulsion, integrating an AI-based drive control system. Despite the advantages of multiphase motors, such as higher power density and enhanced fault tolerance, significant challenges remain in achieving precise torque and variable speed, especially for externally mounted motors operating under deep-sea conditions. Existing control strategies often struggle with the inherent nonlinearities, unmodelled dynamics, and extreme environmental variations (e.g., pressure, temperature affecting oil viscosity and motor parameters) characteristic of such demanding deep-sea applications, leading to suboptimal performance and compromised reliability. Addressing this gap, this research investigates advanced control methodologies to enhance the performance of such motors. A MATLAB/Simulink framework was developed to model the motor, whose drive system leverages an AI-optimised dual fuzzy-PID controller refined using the Harmony Search Algorithm. Additionally, a combination of Indirect Field-Oriented Control (IFOC) and Space Vector PWM strategies are implemented to optimise inverter switching sequences for precise output modulation. Simulation results demonstrate significant improvements in torque response and control accuracy, validating the efficacy of the proposed system. The results highlight the role of AI-based propulsion systems in revolutionising submarine manoeuvrability and energy efficiency. In particular, during a test case involving a speed transition from 75 RPM to 900 RPM, the proposed AI-based controller achieves a near-zero overshoot compared to an initial control scheme that exhibits 75.89% overshoot. Full article