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10,221 Results Found

  • Article
  • Open Access
16 Citations
4,234 Views
15 Pages

Synthetic microbial community (SynCom) application is efficient in promoting crop yield and soil health. However, few studies have been conducted to enhance pepper growth via modulating rhizosphere microbial communities by SynCom application. This st...

  • Article
  • Open Access
13 Citations
5,203 Views
15 Pages

Sediment microbial fuel cells (MFCs) were developed in which the complex substrates present in the sediment could be oxidized by microbes for electron production. In this study, the functional prediction of microbial communities of anode-associated s...

  • Article
  • Open Access
7 Citations
2,603 Views
17 Pages

Structure of Benthic Microbial Communities in the Northeastern Part of the Barents Sea

  • Aleksandra R. Stroeva,
  • Alexandra A. Klyukina,
  • Olesya N. Vidishcheva,
  • Elena N. Poludetkina,
  • Marina A. Solovyeva,
  • Vladislav O. Pyrkin,
  • Liliya A. Gavirova,
  • Nils-Kåre Birkeland,
  • Grigorii G. Akhmanov and
  • Alexander Y. Merkel
  • + 1 author

The Barents Sea shelf is one of the most economically promising regions in the Arctic in terms of its resources and geographic location. However, benthic microbial communities of the northeastern Barents Sea are still barely studied. Here, we present...

  • Feature Paper
  • Opinion
  • Open Access
18 Citations
10,581 Views
19 Pages

25 September 2017

With our growing understanding of the impact of microbial communities, understanding how such communities function has become a priority. The influence of microbial communities is widespread. Human-associated microbiota impacts health, environmental...

  • Article
  • Open Access
6 Citations
1,762 Views
18 Pages

Limited Microbial Contribution in Salt Lake Sediment and Water to Each Other’s Microbial Communities

  • Mingxian Han,
  • Huiying Yu,
  • Jianrong Huang,
  • Chuanxu Wang,
  • Xin Li,
  • Xiaodong Wang,
  • Liu Xu,
  • Jingjing Zhao and
  • Hongchen Jiang

Climate change and human activities have led to frequent exchanges of sedimentary and aquatic microorganisms in lakes. However, the ability of these microorganisms to survive in their respective habitats between saline lake sediment and water remains...

  • Article
  • Open Access
8 Citations
3,588 Views
24 Pages

Glacial Legacies: Microbial Communities of Antarctic Refugia

  • Abigail C. Jackson,
  • Jesse Jorna,
  • John M. Chaston and
  • Byron J. Adams

1 October 2022

In the cold deserts of the McMurdo Dry Valleys (MDV) the suitability of soil for microbial life is determined by both contemporary processes and legacy effects. Climatic changes and accompanying glacial activity have caused local extinctions and last...

  • Article
  • Open Access
6 Citations
2,162 Views
24 Pages

Characterization of Microbial Decay and Microbial Communities in Waterlogged Archaeological Rosewood (Dalbergia Species)

  • Jong Sik Kim,
  • Minseok Kim,
  • Ju Won Lim,
  • Mi Young Cha,
  • Kwang Ho Lee,
  • Yong Hee Yoon and
  • Yoon Soo Kim

3 October 2023

While numerous studies have examined microbial attacks on waterlogged archaeological wood, limited information is available regarding microbial attacks in waterlogged tropical hardwoods submerged in marine environments. In this context, we explored m...

  • Article
  • Open Access
60 Citations
8,047 Views
12 Pages

Evolving Microbial Communities in Cellulose-Fed Microbial Fuel Cell

  • Renata Toczyłowska-Mamińska,
  • Karolina Szymona,
  • Patryk Król,
  • Karol Gliniewicz,
  • Katarzyna Pielech-Przybylska,
  • Monika Kloch and
  • Bruce E. Logan

4 January 2018

The abundance of cellulosic wastes make them attractive source of energy for producing electricity in microbial fuel cells (MFCs). However, electricity production from cellulose requires obligate anaerobes that can degrade cellulose and transfer elec...

  • Review
  • Open Access
17 Citations
9,589 Views
25 Pages

The Impact of Flooding on Soil Microbial Communities and Their Functions: A Review

  • Ashim Kumar Das,
  • Da-Sol Lee,
  • Youn-Ji Woo,
  • Sharmin Sultana,
  • Apple Mahmud and
  • Byung-Wook Yun

Soil microorganisms provide multifaceted benefits, including maintaining soil nutrient dynamics, improving soil structure, and instituting decomposition, all of which are important to soil health. Unpredictable weather events, including flooding from...

  • Review
  • Open Access
51 Citations
14,883 Views
17 Pages

26 February 2019

Microbial cooperation pervades ecological scales, from single-species populations to host-associated microbiomes. Understanding the mechanisms promoting the stability of cooperation against potential threats by cheaters is a major question that only...

  • Review
  • Open Access
25 Citations
6,848 Views
18 Pages

Understanding Interaction Patterns within Deep-Sea Microbial Communities and Their Potential Applications

  • Muhammad Zohaib Nawaz,
  • Raghul Subin Sasidharan,
  • Huda Ahmed Alghamdi and
  • Hongyue Dang

28 January 2022

Environmental microbes living in communities engage in complex interspecies interactions that are challenging to decipher. Nevertheless, the interactions provide the basis for shaping community structure and functioning, which is crucial for ecosyste...

  • Article
  • Open Access
26 Citations
6,325 Views
9 Pages

26 January 2017

Forest management often results in changes in soil microbial communities. To understand how forest management can change microbial communities, we studied soil microbial abundance and community structure in a natural Chamaecyparis (NCP) forest, a dis...

  • Article
  • Open Access
3,268 Views
14 Pages

Impact of Harvest on Switchgrass Leaf Microbial Communities

  • Esther Singer,
  • Elizabeth M. Carpenter,
  • Jason Bonnette,
  • Tanja Woyke and
  • Thomas E. Juenger

22 December 2021

Switchgrass is a promising feedstock for biofuel production, with potential for leveraging its native microbial community to increase productivity and resilience to environmental stress. Here, we characterized the bacterial, archaeal and fungal diver...

  • Article
  • Open Access
26 Citations
5,253 Views
18 Pages

The Effects of Microbial Inoculants on Bacterial Communities of the Rhizosphere Soil of Maize

  • Minchong Shen,
  • Jiangang Li,
  • Yuanhua Dong,
  • Zhengkun Zhang,
  • Yu Zhao,
  • Qiyun Li,
  • Keke Dang,
  • Junwei Peng and
  • Hong Liu

The bacterial community of rhizosphere soil maintains soil properties, regulates the microbiome, improves productivity, and sustains agriculture. However, the structure and function of bacterial communities have been interrupted or destroyed by unrea...

  • Article
  • Open Access
3 Citations
4,516 Views
18 Pages

Differentiation between Impacted and Unimpacted Microbial Communities of a Nitrogen Contaminated Aquifer

  • Justin G. Morrissy,
  • Suzie M. Reichman,
  • Matthew J. Currell,
  • Aravind Surapaneni,
  • Mallavarapu Megharaj,
  • Nicholas D. Crosbie,
  • Daniel Hirth,
  • Simon Aquilina,
  • William Rajendram and
  • Andrew S. Ball

Nitrogen contamination is ubiquitous across the globe; as a result of this, the need to understand and predict the extent and effects of nitrogen contamination on microbial ecosystems is increasingly important. This paper utilises a dataset that prov...

  • Article
  • Open Access
9 Citations
3,247 Views
26 Pages

Assessing the Ecotoxicity of Eight Widely Used Antibiotics on River Microbial Communities

  • María Rosa Pino-Otín,
  • Guillermo Lorca,
  • Elisa Langa,
  • Francisco Roig,
  • Eva M. Terrado and
  • Diego Ballestero

30 November 2023

Global prevalence of antibiotic residues (ABX) in rivers requires ecotoxicological impact assessment. River microbial communities serve as effective bioindicators for this purpose. We quantified the effects of eight commonly used ABXs on a freshwater...

  • Article
  • Open Access
2 Citations
2,370 Views
17 Pages

Biochar-Mediated Effects on Changes in Soil Quality and Microbial Communities

  • Mingyu Wu,
  • Mengyuan Wang,
  • Wenxuan Shi,
  • Qian Zhang,
  • Tengfei Guo,
  • Peipei Li,
  • Yanlai Han and
  • Hui Li

31 July 2025

In a greenhouse experiment, we examined the behavior of biochar in arable soil to demonstrate that these supplements can boost soil carbon storage, as well as to track changes in microbial biomass and identify the microbial communities that use these...

  • Perspective
  • Open Access
23 Citations
4,465 Views
19 Pages

Eco-Evolutionary Dynamics in Microbial Communities from Spontaneous Fermented Foods

  • Anna Y. Alekseeva,
  • Anneloes E. Groenenboom,
  • Eddy J. Smid and
  • Sijmen E. Schoustra

Eco-evolutionary forces are the key drivers of ecosystem biodiversity dynamics. This resulted in a large body of theory, which has partially been experimentally tested by mimicking evolutionary processes in the laboratory. In the first part of this p...

  • Review
  • Open Access
6 Citations
2,480 Views
13 Pages

Effects of Graphene-Based Nanomaterials on Microorganisms and Soil Microbial Communities

  • Huifen Cao,
  • Xiao Zhang,
  • Haiyan Wang,
  • Baopeng Ding,
  • Sai Ge and
  • Jianguo Zhao

The past decades have witnessed intensive research on the biological effects of graphene-based nanomaterials (GBNs) and the application of GBNs in different fields. The published literature shows that GBNs exhibit inhibitory effects on almost all mic...

  • Article
  • Open Access
1,988 Views
18 Pages

8 July 2024

Microbial communities are known to play an important role in maintaining ecological balance and can be used as an indicator for assessing environmental pollution. Numerous studies have revealed that air pollution can alter the structure of microbial...

  • Article
  • Open Access
10 Citations
2,862 Views
13 Pages

Analysis of Microbial Communities in Aged Refuse Based on 16S Sequencing

  • Fen Hou,
  • Junjie Du,
  • Ye Yuan,
  • Xihui Wu and
  • Sai Zhao

7 April 2021

Aged refuse is widely considered to have certain soil fertility. 16S rRNA amplicon sequencing is used to investigate the microbial community of aged refuse. The aged refuse is found to contain higher soil fertility elements (total nitrogen, total pho...

  • Article
  • Open Access
1 Citations
3,371 Views
22 Pages

Industrial wastewaters display a complex and diverse range of physicochemical properties that are measured, studied, and treated by businesses and water service providers. Less frequently measured are the microbial communities in these wastes, despit...

  • Article
  • Open Access
2 Citations
2,713 Views
20 Pages

Microbial Communities in Gynecological Cancers and Their Association with Tumor Somatic Variation

  • Jesus Gonzalez-Bosquet,
  • Megan E. McDonald,
  • David P. Bender,
  • Brian J. Smith,
  • Kimberly K. Leslie,
  • Michael J. Goodheart and
  • Eric J. Devor

23 June 2023

There are strong correlations between the microbiome and human disease, including cancer. However, very little is known about potential mechanisms associated with malignant transformation in microbiome-associated gynecological cancer, except for HPV-...

  • Article
  • Open Access
1 Citations
1,201 Views
18 Pages

Interactive Effects of Precipitation and Nitrogen on Soil Microbial Communities in a Desert Ecosystem

  • Qianqian Dong,
  • Zhanquan Ji,
  • Hui Wang,
  • Wan Duan,
  • Wenli Cao,
  • Wenshuo Li and
  • Yangyang Jia

Increased precipitation and nitrogen (N) deposition critically influence ecological processes and stability in desert ecosystems. Studying how the soil microbial community responds to these climatic changes will improve our understanding of the impac...

  • Article
  • Open Access
7 Citations
2,846 Views
14 Pages

Effects of Habitat Differences on Microbial Communities during Litter Decomposing in a Subtropical Forest

  • Hongrong Guo,
  • Fuzhong Wu,
  • Xiaoyue Zhang,
  • Wentao Wei,
  • Ling Zhu,
  • Ruobing Wu and
  • Dingyi Wang

13 June 2022

The differences between aquatic and terrestrial habitats could change microbial community composition and regulate litter decomposition in a subtropical forest, but the linkage remains uncertain. Using microbial phospholipid fatty acids (PLFAs), the...

  • Review
  • Open Access
13 Citations
4,607 Views
22 Pages

12 January 2025

Directed Evolution of Microbial Communities (DEMC) offers a promising approach to enhance the functional attributes of microbial consortia in fermented foods by mimicking natural selection processes. This review details the application of DEMC in fer...

  • Review
  • Open Access
37 Citations
11,048 Views
18 Pages

Analysis of Microbial Communities: An Emerging Tool in Forensic Sciences

  • Audrey Gouello,
  • Catherine Dunyach-Remy,
  • Christian Siatka and
  • Jean-Philippe Lavigne

The objective of forensic sciences is to find clues in a crime scene in order to reconstruct the scenario. Classical samples include DNA or fingerprints, but both have inherent limitations and can be uninformative. Another type of sample has emerged...

  • Article
  • Open Access
2 Citations
2,461 Views
20 Pages

Response of Microbial Communities to Antiviral Drug Stress in Surface Water in Beijing

  • Xin Yuan,
  • Shanwei Sun,
  • Rongshan Wu,
  • Yulin Kang,
  • Linlin Wu,
  • Miao Chen,
  • Jingpu Fan,
  • Changsheng Guo and
  • Jian Xu

4 January 2025

The environmental persistence of antiviral drugs poses serious safety hazards to aquatic ecosystems through their selective pressure on microorganisms, yet the understanding of antiviral drugs’ impact on microbial community structures remains l...

  • Article
  • Open Access
1,287 Views
14 Pages

The bacterial microbial community composition during wine fermentation is a key contributor to wine quality and flavor. However, studies on the regulatory effects of different grape varieties and co-fermentation processes on the microbial community s...

  • Article
  • Open Access
21 Citations
3,873 Views
17 Pages

Carbon and Nitrogen Availability Drives Seasonal Variation in Soil Microbial Communities along an Elevation Gradient

  • Xiaoling Xiong,
  • Maokui Lyu,
  • Cui Deng,
  • Xiaojie Li,
  • Yuming Lu,
  • Weisheng Lin,
  • Yongmeng Jiang and
  • Jinsheng Xie

9 October 2022

Changes in soil abiotic and biotic properties can be powerful drivers of feedback between plants and soil microbial communities. However, the specific mechanisms by which seasonal changes in environmental factors shape soil microbial communities are...

  • Article
  • Open Access
30 Citations
4,951 Views
9 Pages

While much attention has been given to the role of animal intestinal microbes, few studies have focused on microbial communities and associated functions in cultured aquatic animals. In this study, high–throughput sequencing was used to analyze...

  • Article
  • Open Access
23 Citations
5,541 Views
19 Pages

Microbial Communities of Artisanal Fermented Milk Products from Russia

  • Tatiana V. Kochetkova,
  • Ilya P. Grabarnik,
  • Alexandra A. Klyukina,
  • Kseniya S. Zayulina,
  • Ivan M. Elizarov,
  • Oksana O. Shestakova,
  • Liliya A. Gavirova,
  • Anastasia D. Malysheva,
  • Polina A. Shcherbakova and
  • Ilya V. Kublanov
  • + 4 authors

Fermented milk products (FMPs) have numerous health properties, making them an important part of our nutrient budget. Based on traditions, history and geography, there are different preferences and recipes for FMP preparation in distinct regions of t...

  • Article
  • Open Access
59 Citations
5,098 Views
13 Pages

Effects of Continuous Sugar Beet Cropping on Rhizospheric Microbial Communities

  • Weijuan Huang,
  • Donglei Sun,
  • Jiantao Fu,
  • Huanhuan Zhao,
  • Ronghua Wang and
  • Yuxing An

22 December 2019

The continuous cropping of sugar beet can result in soil degradation and a decrease in the sugar beet yield and quality. However, the role of continuous sugar beet (Beta vulgaris L. var. saccharifera) cropping in shaping the structure and function of...

  • Article
  • Open Access
12 Citations
4,388 Views
22 Pages

Diversity and Metabolism of Microbial Communities in a Hypersaline Lake along a Geochemical Gradient

  • Alla V. Bryanskaya,
  • Aleksandra A. Shipova,
  • Alexei S. Rozanov,
  • Oxana A. Kolpakova,
  • Elena V. Lazareva,
  • Yulia E. Uvarova,
  • Vadim M. Efimov,
  • Sergey M. Zhmodik,
  • Oxana P. Taran and
  • Sergey E. Peltek
  • + 1 author

15 April 2022

In the south of western Siberia (Russia), there are many unique and unexplored soda, saline, and freshwater lakes. In this study, the results are presented on microbial diversity, its metabolic potential, and their relation with a set of geochemical...

  • Article
  • Open Access
10 Citations
3,798 Views
16 Pages

Synthetic Microbial Community Promotes Bacterial Communities Leading to Soil Multifunctionality in Desertified Land

  • Xinwei Hao,
  • Yazhou Gu,
  • Hongzhi Zhang,
  • Xiao Wang,
  • Xiaozhen Liu,
  • Chunlei Chen,
  • Congcong Wang,
  • Xiaoqing Zhang,
  • Xingyu Liu and
  • Xihui Shen

Soil desertification is an important challenge in global soil management, and effectively and stably restoring soil function is an urgent problem. Using synthetic microbial communities (SynComs) is a burgeoning microbial strategy aimed at enhancing s...

  • Review
  • Open Access
37 Citations
4,190 Views
16 Pages

In recent years, as an emerging material, nanomaterials have rapidly expanded from laboratories to large-scale industrial productions. Along with people’s productive activities, these nanomaterials can enter the natural environment of soil, wat...

  • Article
  • Open Access
7 Citations
3,148 Views
13 Pages

The microbial community interacts with the environment and the health and immune function of its host both directly and indirectly. However, very few studies about microbial communities have considered habitat and external environmental variables. Th...

  • Article
  • Open Access
4 Citations
3,414 Views
14 Pages

Comparison of the Microbial Communities Affected by Different Environmental Factors in a Polluted River

  • Liao Ouyang,
  • Xinyue Liu,
  • Huirong Chen,
  • Xuewei Yang,
  • Shaofeng Li and
  • Shuangfei Li

26 November 2022

Understanding how bacterial communities adapt to different environmental factors provides a scientific basis for developing and utilizing microbial resources in rivers. This study investigated the changes in the microbial communities of water and mud...

  • Article
  • Open Access
27 Citations
4,896 Views
17 Pages

Concrete and wood are commonly used to manufacture artificial reefs (ARs) worldwide for marine resource enhancement and habitat restoration. Although microbial biofilms play an important role in marine ecosystems, the microbial communities that colon...

  • Article
  • Open Access
47 Citations
8,102 Views
15 Pages

Effect of Long-Term Continuous Fumigation on Soil Microbial Communities

  • Sadikshya R. Dangi,
  • Rebecca Tirado-Corbalá,
  • James Gerik and
  • Bradley D. Hanson

High value crop producers in California rely heavily on soil fumigation to control a wide array of soil borne pests including nematodes, pathogens and weeds. Fumigants with broad biocidal activity can affect soil microbial communities that contribute...

  • Article
  • Open Access
9 Citations
3,040 Views
15 Pages

How microbial communities respond to extreme conditions in the stratosphere remains unclear. To test this effect, cyanobacterial crusts collected from Tengger Desert were mounted to high balloons and briefly exposed (140 min) to high UV irradiation a...

  • Article
  • Open Access
2 Citations
912 Views
18 Pages

This study evaluated the synergistic effects of microbial decomposition agents and deep rotary tillage on rice straw decomposition, soil nutrient dynamics, and microbial communities in paddy fields of southern China. A two-factor randomized block exp...

  • Article
  • Open Access
66 Citations
7,627 Views
19 Pages

The Terrestrial Plastisphere: Diversity and Polymer-Colonizing Potential of Plastic-Associated Microbial Communities in Soil

  • Joana MacLean,
  • Sathish Mayanna,
  • Liane G. Benning,
  • Fabian Horn,
  • Alexander Bartholomäus,
  • Yosri Wiesner,
  • Dirk Wagner and
  • Susanne Liebner

The concept of a ‘plastisphere microbial community’ arose from research on aquatic plastic debris, while the effect of plastics on microbial communities in soils remains poorly understood. Therefore, we examined the inhabiting microbial communities o...

  • Article
  • Open Access
3 Citations
4,582 Views
18 Pages

27 December 2024

Forest succession is a rapid approach that can be used to increase soil carbon (C) stocks. It is crucial to understand how forest succession influences microbial community assembly and soil carbon fractions to improve carbon sequestration strategies....

  • Article
  • Open Access
2 Citations
1,233 Views
18 Pages

26 March 2025

The widespread application of herbicides has profound ecological consequences, particularly regarding the distribution of antibiotic resistance genes (ARGs) and microbial communities. In this study, we analyzed herbicide-related metagenomic data to a...

  • Article
  • Open Access
9 Citations
2,639 Views
16 Pages

Investigating the Effects of Elevation on Microbial Communities and Soil Properties at Fanjing Mountain, China

  • Juncai Wang,
  • Shengyang Xiao,
  • Kashif Hayat,
  • Xiaofeng Liao,
  • Jingzhong Chen,
  • Lanyue Zhang and
  • Yuangui Xie

8 November 2024

Elevation is one of the most influential factors affecting soil characteristics and microbial communities in forest ecosystems. Nevertheless, there is no consensus on how soil characteristics, soil microbials, and their relationships response to the...

  • Review
  • Open Access
25 Citations
10,697 Views
19 Pages

Multifaceted Applications of Synthetic Microbial Communities: Advances in Biomedicine, Bioremediation, and Industry

  • Edgar Adrian Contreras-Salgado,
  • Ana Georgina Sánchez-Morán,
  • Sergio Yair Rodríguez-Preciado,
  • Sonia Sifuentes-Franco,
  • Rogelio Rodríguez-Rodríguez,
  • José Macías-Barragán and
  • Mariana Díaz-Zaragoza

29 August 2024

The broad range of applications offered by synthetic biology and bioengineering has revolutionized the ability to design and redesign microorganisms to express specific functions, overcoming the limitations of natural biological systems. This advance...

  • Article
  • Open Access
18 Citations
3,276 Views
15 Pages

Succession of Microbial Communities in Waste Soils of an Iron Mine in Eastern China

  • Qin Zhang,
  • Pengfei Wei,
  • Joseph Frazer Banda,
  • Linqiang Ma,
  • Weiao Mao,
  • Hongyi Li,
  • Chunbo Hao and
  • Hailiang Dong

The reclamation of mine dump is largely centered on the role played by microorganisms. However, the succession of microbial community structure and function in ecological restoration of the mine soils is still poorly understood. In this study, soil s...

  • Article
  • Open Access
1 Citations
1,283 Views
12 Pages

Power Generation and Microbial Communities in Microbial Fuel Cell Powered by Tobacco Wastewater

  • Yutong Liu,
  • Cong Chen,
  • Xing Xue,
  • Kun Tang,
  • Xiaoyu Chen,
  • Miao Lai,
  • Xiaohu Li and
  • Zhiyong Wu

7 April 2025

The tobacco production process generates a substantial amount of wastewater characterized by high organics and low biodegradability, which poses a significant risk of severe environmental pollution. In order to explore a clean and low-cost technology...

  • Article
  • Open Access
29 Citations
4,600 Views
15 Pages

Application of Organic Fertilizer Changes the Rhizosphere Microbial Communities of a Gramineous Grass on Qinghai–Tibet Plateau

  • Kun Ma,
  • Yingcheng Wang,
  • Xin Jin,
  • Yangan Zhao,
  • Huilin Yan,
  • Haijuan Zhang,
  • Xueli Zhou,
  • Guangxin Lu and
  • Ye Deng

The effects of organic fertilizer application on the soil microbial community in grassland systems have been extensively studied. However, the effects of organic fertilizers on the structure of rhizosphere microbial communities are still limited. In...

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