Search Results (29)

Biofilms formed by Candida albicans pose therapeutic challenges due to their resistance to conventional antimicrobials, highlighting the need for more effective treatments. Rhamnolipids (RLs) are biosurfactants with diverse antimicrobial properties. Bacteriophages are viruses that target specific bacterial strains. Recent studies have shown that they may affect biofilm formation by fungi and yeasts. This study investigated the combined antimicrobial effects of RLs and bacteriophages against C. albicans biofilms, focusing on their anti-adhesive and inhibitory effects on biofilm development. RT-PCR assays were used to analyze gene modulation in C. albicans biofilm formation in response to RLs and bacteriophage treatments, while hyphae formation was examined using microscopy. The results showed that RLs-bacteriophage combinations significantly reduced biofilm formation compared to individual treatments. A combination of 200 mg/L RLs with bacteriophage BF9 led to a 94.8% reduction in biofilm formation. In a subsequent model, the same RL concentration with bacteriophage LO5/1f nearly eliminated biofilm formation (~96%). Gene expression analysis revealed downregulation of key biofilm-associated genes when Candida cells were treated with 200 mg/L RLs and four bacteriophages (BF17, LO5/1f, JG004, FD). These results show the potential of RL and bacteriophage combinations in combating C. albicans biofilms, presenting a promising therapeutic approach against resilient infections. Full article

Heavy metal (HM) contamination in soil poses a severe environmental threat, jeopardizing ecosystem health and potentially entering the food chain through plant uptake. Phytoremediation, a bioremediation technique utilizing plants to remove or immobilize contaminants, offers a sustainable and eco-friendly solution for HM remediation. This study investigated the interactive effects of arbuscular mycorrhizal fungi (AMF) and chelating agents (EDTA and DTPA) on the growth of maize (Zea mays L.) and alfalfa (Medicago sativa L.) cultivated in metal-contaminated soil and their impact on HM uptake by these plants. The findings revealed that AMF and chelating agents have complex interactive effects on plant growth and metal accumulation. Maize (Zea mays L.) shoot dry matter increased with AMF and chelating agents at lower concentrations. Both plants generally showed a significant (p ≤ 0.05) increase in shoot dry matter with amendments, with AMF × EDTA (10 mmol/kg) being the most effective for alfalfa. DTPA and EDTA generally reduced the DTPA-extractable metals in soil, suggesting potential for metal removal. However, the effects of AMF on metal availability were variable. Metal concentrations in maize (Zea mays L.) shoots increased with increasing DTPA and EDTA concentrations, while the effects of AMF were more complex. The alfalfa shoot metal content showed varied responses, with EDTA (5 mmol/kg) effectively reducing the metal uptake. In general, treatments involving chelating agents (DTPA and EDTA) tend to result in higher bioaccumulation factor (BF) values compared to the non-treated controls for most HMs in both plant species. Mycorrhizal fungi (AMF) treatment alone or in combination with chelating agents also showed that varied effects on HM uptake in both the alfalfa and maize treatments with chelating agents, especially at higher concentrations, generally promoted the greater translocation of HMs in both plant species. Both alfalfa and maize responded differently to treatments, with some treatments showing higher translocation factor (TF) values for certain HMs in one species compared to the other. Mycorrhizal fungi (AMF) treatment alone or in combination with chelating agents also showed varied effects on HM uptake and translocation in both alfalfa and maize. Further research is required to optimize remediation strategies that balance plant health and metal mobilization. Full article

Increasing soil and water salinity threatens global agriculture, particularly affecting rice. This study investigated the residual effects of microbial biochar and nitrogen fertilizer in mitigating salt stress in paddy soil and regulating the biochemical characteristics of rice plants. Two rice varieties, Shuang Liang You 138 (SLY138), a salt-tolerant, and Jing Liang You 534 (JLY534), a salt-sensitive, were grown under 0.4 ds/m EC (S0) and 6.84 ds/m EC (S1) in a glass house under controlled conditions. Three types of biochar—rice straw biochar (BC), fungal biochar (BF), and bacterial biochar (BB)—were applied alongside two nitrogen (N) fertilizer rates (60 kg ha⁻¹ and 120 kg ha⁻¹) in a previous study. The required salinity levels were maintained in respective pots through the application of saline irrigation water. Results showed that residual effects of microbial biochars (BF and BB) had higher salt mitigation efficiency than sole BC. The combination of BB and N fertilizer (BB + N120) significantly decreased soil pH by 23.45% and Na⁺ levels by 46.85%, creating a more conducive environment for rice growth by enhancing beneficial microbial abundance and decreasing pathogenic fungi in saline soil. Microbial biochars (BF and BB) positively improved soil properties (physicochemical) and biochemical and physiological properties of plants, ultimately rice growth. SLY138 significantly had a less severe response to salt stress compared to JLY534. The mitigation effects of BB + N120 kg ha⁻¹ were particularly favorable for SLY138. In summary, the combined residual effect of BF and BB with N120 kg ha⁻¹, especially bacterial biochar (BB), played a positive role in alleviating salt stress on rice growth, suggesting its potential utility for enhancing rice yield in paddy fields. Full article

Excessive use of inorganic fertilizers disrupts soil nutrient balance and leads to soil degradation and a decrease in biodiversity. In contrast, bio-fertilizers enhance soil structure and fertility and promote plant growth and sustainable agriculture development. Therefore, this study focused on a rotation system of winter wheat and summer maize and aimed to explore the effects of applying chemical fertilizer (NPK) and bio-fertilizer (BF) in the winter wheat season on the sustainable soil development of current wheat and subsequent maize. Before sowing winter wheat four fertilization treatments were, respectively CK (100% NPK at 750 kg ha⁻¹), A (60% NPK at 450 + 20% BF at 150 kg ha⁻¹), B (60% NPK at 450 + 40% BF at 300 kg ha⁻¹), and C (60% NPK at 450 + 60% BF at 450 kg ha⁻¹), conducted. The results showed that treatment A (60% NPK + 20% BF) replacing the NPK at 300 kg ha⁻¹ with BF at 150 kg ha⁻¹ significantly soil nutrient contents, enzyme activity, and microbial metabolic activity. The study also found a positive correlation between soil parameters (total nitrogen, alkaline nitrogen, available phosphorus, organic matter, urease, and alkaline phosphatase in the winter wheat and maize cropping season). Furthermore, the soil microbial composition showed significant enrichment of Proteobacteria, Acidobacteria, Actinobacteria, and Firmicutes, and variations among treatments. Moreover, the application of biofertilizer enhanced the diversity of soil fungi species, particularly during the winter wheat season. This study highlights the importance of integrating biofertilizers with NPK fertilizer for agricultural system conversion and promoting agricultural production and sustainability. Full article

To expound on the correlation between the microorganism communities and the formation of off-odour in Xuanwei ham, the microorganism communities and volatile compounds were investigated in the biceps femoris (BF) and semimembranosus (SM) of Xuanwei ham with different quality grades (normal ham and spoiled ham). The single molecule real-time sequencing showed that differential bacteria and fungi were more varied in normal hams than in spoiled hams. Headspace solid-phase microextraction–gas chromatography (HS-SPME-GC-MS) results indicated that aldehydes and alcohols were significantly higher in spoiled hams than those in normal hams (p < 0.05). The off-odour of spoiled hams was dominated by ichthyic, malodourous, sweaty, putrid, sour, and unpleasant odours produced by compounds such as trimethylamine (SM: 13.05 μg/kg), hexanal (BF: 206.46 μg/kg), octanal (BF: 59.52 μg/kg), methanethiol (SM: 12.85 μg/kg), and valeric acid (BF: 15.08 μg/kg), which are positively correlated with Bacillus cereus, Bacillus subtilis, Bacillus licheniformis, Pseudomonas sp., Aspergillus ruber, and Moraxella osloensis. Furthermore, the physicochemical property and quality characteristics results showed that high moisture (BF: 56.32 g/100 g), pH (BF: 6.63), thiobarbituric acid reactive substances (TBARS) (SM: 1.98 MDA/kg), and low NaCl content (SM: 6.31%) were also responsible for the spoilage of hams with off-odour. This study provided a deep insight into the off-odour of Xuanwei ham from the perspective of microorganism communities and a theoretical basis for improving the flavour and overall quality of Xuanwei hams. Full article

The red soil region in southern China has become the second-largest soil erosion area after the Loess Plateau. The evolutionary trajectory of soil fungi during vegetation restoration in acidic red soil regions remains a subject of inquiry. The investigation focused on the restoration process of an ecosystem facing intense degradation in the southern regions of China by studying four distinctive vegetation types: barren land (BL), pure Pinus massoniana forest (CF), mixed coniferous (CBF), and broad-leaved forest (BF). The outcomes revealed considerable enhancements in soil properties’ attributes, evident through a gradual reduction in the bulk density of soil (SBD) and a corresponding increment in soil moisture content (MC), total nitrogen (TN), total carbon (TC), total potassium (TK), soil organic matter (SOM), and available potassium (AK) as vegetation restoration advanced. An intriguing trend emerged where the relative abundance of Ascomycota fungi displayed a declining trajectory, whereas Basidiomycota fungi exhibited an ascending trend with the progression of vegetation restoration. Specifically, broad-leaved forests exhibited a significantly greater relative abundance of Penicillium fungi compared to other stages of vegetation restoration. The diversity of soil fungal communities increased in tandem with vegetation restoration. A redundancy analysis illuminated a strong and positive relationship between the abundance of major soil fungi and soil pH, TN, and TC (key influencers of acidic red soil fungal populations). This study provided additional evidence of an elevation in ectomycorrhizal and saprophytic trophic fungi, signifying a transition that enhances the vegetation’s ability to capture water and nutrients. This, in turn, contributes to the overall enrichment and diversity of vegetation communities during the progression of restoration. Full article

Selecting the appropriate indicators and measuring time point numbers is important for accurately examining the shift in soil gross decomposition channel structure. Through a selected case study on a natural forest vs. rainfed arable system over a two-month-long experiment, the utility of three commonly employed indicators (fungi to bacteria ratio (F:B), fungivore to bacterivore ratio (FF:BF), and glucosamine to muramic acid ratio (GlcN:MurN)) were compared to reflect the shift in soil gross decomposition channel structure. The requirement of measuring the time point numbers for the three indicators was also assessed, and we suggest a potential methodology. Our results revealed that the GlcN:MurN ratio was more reliable for assessing the shifts in gross decomposition channel structure for long-term land use changes, while it was less sensitive to short-term drought compared with the other two indicators. The F:B ratio was more applicable than the FF:BF ratio for reflecting both long- and short-term changes. Furthermore, the reliability of the GlcN:MurN ratio was the least dependent on measuring time point numbers. We suggest the use of multiple indicators and the adoption of multiple measuring time points for the overall methodology. Full article

Pinus massoniana (Massion’s pine), a pioneer tree species, exhibits restoration potential in polluted mining areas. However, the physiological and molecular mechanisms of ectomycorrhizal (ECM) fungi in Massion’s pine adaptability to multiple-toxic-metal stress are still unclear. Hence, Massion’s pine seedlings inoculated with two strains of C. geophilum, which were screened and isolated from a polluted mine area, were cultivated in mine soil for 90 days to investigate the roles of EMF in mediating toxic metal tolerance in host plants. The results showed that compared with the non-inoculation control, C. geophilum (CG1 and CG2) significantly promoted the biomass, root morphology, element absorption, photosynthetic characteristics, antioxidant enzyme activities (CAT, POD, and SOD), and proline content of Massion’s pine seedlings in mine soil. C. geophilum increased the concentrations of Cr, Cd, Pb, and Mn in the roots of Massion’s pine seedlings, with CG1 significantly increasing the concentrations of Pb and Mn by 246% and 162% and CG2 significantly increasing the concentrations of Cr and Pb by 102% and 78%. In contrast, C. geophilum reduced the concentrations of Cr, Cd, Pb, and Mn in the shoots by 14%, 33%, 27%, and 14% on average, respectively. In addition, C. geophilum significantly reduced the transfer factor (TF) of Cr, Cd, Pb, and Mn by 32–58%, 17–26%, 68–75%, and 18–64%, respectively, and the bio-concentration factor (BF) of Cd by 39–71%. Comparative transcriptomic analysis demonstrated that the differently expressed genes (DEGs) were mainly encoding functions involved in “transmembrane transport”, “ion transport”, “oxidation reduction process”, “oxidative phosphorylation”, “carbon metabolism”, “glycolysis/gluconeogenesis”, “photosynthesis”, and “biosynthesis of amino acids.” These results indicate that C. geophilum is able to mitigate toxic metals stress by promoting nutrient uptake, photosynthesis, and plant growth, thereby modulating the antioxidant system to reduce oxidative stress and reducing the transport and enrichment of toxic metals from the root to the shoot of Massion’s pine seedlings. Full article

The synthesis of new fluorescent probes, based on biocompatible luminophors and exhibiting various specificities, is intensively developed worldwide. Many luminophors contain a hydrophobic group that limits their application for cell staining under vital conditions. Herein, we report the synthesis of two BODIPY molecules—BF₂-meso-(4-butan/pentanamido-N-(((1S,5R)-6,6-dimethylbicyclo [3.1.1]hept-2-en-2-yl)methyl)-N,N-dimethylpropan-1-aminium)-3,3′,5,5′-tetramethyl-2,2′-dipyrromethene bromides—designed as 10, 11 with a spacer of either four or three CH₂ groups in length, respectively. These molecules present conjugates of BODIPY luminophors with (+)-myrtenol via a quaternary ammonium group. Both terpene-BODIPY conjugates demonstrated high fluorescence efficiency in various solvents such as OctOH, DMSO and water, and were characterized by their stability at pH 1.65–9.18. The fusion of the myrtenol, a monocyclic terpene, to the BODIPY fluorophore in the meso-substituent facilitated their penetration into the filamentous fungi Fusarium solani, while impairing the binding of the latter with S. aureus, K. pneumoniae and P. aeruginosa. The additional quaternary ammonium group between the myrtenol and fluorophore moieties restored the bacterial cell-staining while it did not affect the staining of fungi. Finally, the BODIPY conjugate 11 was able to stain both Gram-positive and Gram-negative bacteria by its interaction with their cell wall (or the membrane), as well as penetrating into filamentous fungi F. solani and staining their mitochondria. Full article

Lily Fusarium wilt disease caused by Fusarium spp. spreads rapidly and is highly destructive, leading to a severe reduction in yield. In this study, lily (Lilium brownii var. viridulum) bulbs were irrigated after planting with suspensions of two Bacillus strains that effectively control lily Fusarium wilt disease to assess their effects on the rhizosphere soil properties and microbial community. A high-throughput sequencing of microorganisms in the rhizosphere soil was performed and the soil physicochemical properties were measured. The FunGuild and Tax4Fun tools were used for a functional profile prediction. The results showed that Bacillus amyloliquefaciens BF1 and B. subtilis Y37 controlled lily Fusarium wilt disease with control efficacies of 58.74% and 68.93%, respectively, and effectively colonized the rhizosphere soil. BF1 and Y37 increased the bacterial diversity and richness of the rhizosphere soil and improved the physicochemical properties of the soil, thereby favoring the proliferation of beneficial microbes. The relative abundance of beneficial bacteria was increased and that of pathogenic bacteria was decreased. Bacillus abundance in the rhizosphere was positively correlated with most soil physicochemical properties, whereas Fusarium abundance was negatively correlated with most physicochemical properties. Functional prediction revealed that irrigation with BF1 and Y37 significantly upregulated glycolysis/gluconeogenesis among metabolism and absorption pathways. This study provides insights into the mechanism by which two Bacillus strains with antifungal activity, BF1 and Y37, antagonize plant pathogenic fungi and lays the foundation for their effective application as biocontrol agents. Full article

Antimicrobial resistance (AMR) is one of the top ten threats to public health, as reported by the World Health Organization (WHO). One of the causes of the growing AMR problem is the lack of new therapies and/or treatment agents; consequently, many infectious diseases could become uncontrollable. The need to discover new antimicrobial agents that are alternatives to the existing ones and that allow mitigating this problem has increased, due to the rapid and global expansion of AMR. Within this context, both antimicrobial peptides (AMPs) and cyclic macromolecules, such as resorcinarenes, have been proposed as alternatives to combat AMR. Resorcinarenes present multiple copies of antibacterial compounds in their structure. These conjugate molecules have exhibited antifungal and antibacterial properties and have also been used in anti-inflammatory, antineoplastic, and cardiovascular therapies, as well as being useful in drug and gene delivery systems. In this study, it was proposed to obtain conjugates that contain four copies of AMP sequences over a resorcinarene core. Specifically, obtaining (peptide)₄-resorcinarene conjugates derived from LfcinB (20–25): RRWQWR and BF (32–34): RLLR was explored. First, the synthesis routes that allowed obtaining: (a) alkynyl-resorcinarenes and (b) peptides functionalized with the azide group were established. These precursors were used to generate (c) (peptide)₄-resorcinarene conjugates by azide-alkyne cycloaddition CuAAC, a kind of click chemistry. Finally, the conjugates’ biological activity was evaluated: antimicrobial activity against reference strains and clinical isolates of bacteria and fungi, and the cytotoxic activity over erythrocytes, fibroblast, MCF-7, and HeLa cell lines. Our results allowed establishing a new synthetic route, based on click chemistry, for obtaining macromolecules derived from resorcinarenes functionalized with peptides. Moreover, it was possible to identify promising antimicrobial chimeric molecules that may lead to advances in the development of new therapeutic agents. Full article

The growing interest in functional foods has fueled the hunt for novel lactic acid bacteria (LAB) found in natural sources such as fermented foods. Thus, the aims of this study were to isolate, identify, characterize, and quantify LAB’s antifungal activity and formulate an ingredient for meat product applications. The overlay method performed a logical initial screening by assessing isolated bacteria’s antifungal activity in vitro. Next, the antifungal activity of the fermented bacteria-free supernatants (BFS) was evaluated by agar diffusion assay against six toxigenic fungi. Subsequently, the antifungal activity of the most antifungal BFS was quantified using the microdilution method in 96-well microplates. The meat broth that showed higher antifungal activity was selected to elaborate on an ingredient to be applied to meat products. Finally, antifungal compounds such as organic acids, phenolic acids, and volatile organic compounds were identified in the chosen-fermented meat broth. The most promising biological candidates belonged to the Lactiplantibacillus plantarum and Pediococcus pentosaceus. P. pentosaceus C15 distinguished from other bacteria by the production of antifungal compounds such as nonanoic acid and phenyl ethyl alcohol, as well as the higher production of lactic and acetic acid. Full article

The increased use of chemical fertilizer input in agricultural production and the promotion of sustainable agriculture encourage researchers around the globe to undertake experiments regarding application of organic fertilizers on tomato production. This study aims to amalgamate the comprehensive effects of organic fertilizer application compared with the pure application of chemical fertilizers (100% CF) on soil properties, tomato yield, and fruit quality through meta-analysis. It helps to provide a certain reference for the sustainable development of circular agriculture systems in tomato planting. Articles related to the impact of organic fertilizers on tomato planting were searched on the Web of Science, Science direct, and Google Scholar. A total of 124 documents meeting the Meta-analysis criteria were screened out. A total of 2041 sets of data were screened for soil properties (electrical conductivity, pH, organic matter, total nitrogen, total phosphorus, total potassium, ammonium nitrogen, nitrate nitrogen, available phosphorus, available potassium, bacteria, fungi, urease, catalase) and tomato yield and quality (nitrate, sugar, lycopene, protein). The normal fitting of the response ratio of each data revealed that all of them satisfied the Gaussian curve, and there was no publication bias. The application of organic fertilizers (the total) compared with 100% CF can increase the yield by 3.48%, acidic soil by (pH < 6) 7.98%, neutral soil by (pH = 6~8) 3.35%, soil organic matter by 24.43%, total nitrogen by 32.79%, total phosphorus by 23.97%, total potassium by 44.91%, available phosphorus by 14.46%, available potassium by 16.21%, soil bacteria by 5.94%, urease by 22.32%, and catalase by 17.68%. The application of organic fertilizers (the total) had no significant effect on ammonium nitrogen, nitrate nitrogen, and soil fungi in the soil. After the subgroup analysis, bio-organic fertilizers (BF) can increase tomato yield by 14.15%, reduce soil electrical conductivity by 13.66%, and increase soil catalase activity by 24.55%. Ordinary organic fertilizer (OF) can improve tomato quality, reduce tomato nitrate by 13.02%, and increase sugar by 10.66%, lycopene by 10.78%, total nitrogen by 39.55%, total phosphorus by 29.11%, total potassium by 58.67%, soil bacteria by 6.54%, and urease by 25.41%. Both can increase tomato protein, soil pH, soil available phosphorus, and potassium, but neither can significantly affect the ammonium nitrogen, nitrate nitrogen, and soil fungi in the soil. Correlation analysis revealed a significant positive correlation of tomato yield with lycopene, soil electricity conductivity, organic matter, ammonium nitrogen, nitrate nitrogen, available phosphorus, and urease. The application of organic fertilizers can improve tomato yield and quality and soil properties more compared with 100% CF. BF have better effects on yield and soil electrical conductivity, whereas tomato quality and soil physical and chemical properties are more effected by OF. Hence, this study provides a pathway for the selection of organic fertilizer in tomato production. Full article

Although synthetic colorants are widely used in many industries due to their high stability at different conditions in industrial processes, evidence of its negative impact on health and the environment is undeniable. Filamentous fungi are well known for their use as alternative sources to produce natural pigments. However, an adequate comparison of the productivity parameters between the fermentation systems could be limited to their heterogeneous conditions. Even though Solid-State Fermentations (SSF) on natural substrates are widely used for pigments production, complex media, and non-controlled variables (T, pH, medium composition), these systems could not only hamper the finding of accurate productivity parameters, but also mathematical modeling and genomics-based optimization. In this context, the present study screened five pigment-producing fungi by comparing Submerged (SmF) and Surface Adhesion Fermentation [biofilm (BF) and Solid-State (SSF)] with defined media and controlled variables. For this purpose, we used the same defined media with sucrose as the carbon source for pigment production on SmF, BF, and SSF, and BF and SSF were carried out on inert supports. Five molecularly identified Penicillium and Talaromyces strains isolated from the Peruvian rainforest were selected for their ability to produce yellowish-orange colorants. Highest productivities were obtained from T. brunneus LMB-HP43 in SmF (0.18 AU/L/h) and SSF (0.17 AU/L/h), and P. mallochii LMB-HP37 in SSF (0.18 AU/L/h). Both strains also exhibited the highest yields (AU/g biomass) in the three fermentation systems, reaching values greater than 18-folds in SSF compared to the other strains. Conversely, T. wortmannii LMB-HP14 and P. maximae LMB-HP33 showed no ability to produce pigments in the SSF system. The performed experiments accurately compared the effect of the fermentation system on yield and productivity. From this, further genomics approaches can be considered for an extensive analysis of pigment synthesis pathways and a genomics-driven optimization in the best fermentation system. Full article

Multidrug resistance (MDR) among pathogens and the associated infections represent an escalating global public health problem that translates into raised mortality and healthcare costs. MDR bacteria, with both intrinsic abilities to resist antibiotics treatments and capabilities to transmit genetic material coding for further resistance to other bacteria, dramatically decrease the number of available effective antibiotics, especially in nosocomial environments. Moreover, the capability of several bacterial species to form biofilms (BFs) is an added alarming mechanism through which resistance develops. BF, made of bacterial communities organized and incorporated into an extracellular polymeric matrix, self-produced by bacteria, provides protection from the antibiotics’ action, resulting in the antibiotic being ineffective. By adhering to living or abiotic surfaces present both in the environment and in the healthcare setting, BF causes the onset of difficult-to-eradicate infections, since it is difficult to prevent its formation and even more difficult to promote its disintegration. Inspired by natural antimicrobial peptides (NAMPs) acting as membrane disruptors, with a low tendency to develop resistance and demonstrated antibiofilm potentialities, cationic polymers and dendrimers, with similar or even higher potency than NAMPs and with low toxicity, have been developed, some of which have shown in vitro antibiofilm activity. Here, aiming to incite further development of new antibacterial agents capable of inhibiting BF formation and dispersing mature BF, we review all dendrimers developed to this end in the last fifteen years. The extension of the knowledge about these still little-explored materials could be a successful approach to find effective weapons for treating chronic infections and biomaterial-associated infections (BAIs) sustained by BF-producing MDR bacteria. Full article