Search Results (41)

Drought stress is an important abiotic stress factor restricting crop production. Broomcorn millet (Panicum miliaceum L.) has become an ideal material for analyzing the stress adaptation mechanisms of crops due to its strong stress resistance. However, the functional characteristics of its rhizosphere microorganisms in response to drought remain unclear. In this study, metagenomics and metabolomics techniques were employed to systematically analyze the compositional characteristics of the microbial community, functional properties, and changes in metabolites in the rhizosphere soil of broomcorn millet under drought stress. On this basis, an analysis was conducted in combination with the differences in functional pathways. The results showed that the drought treatment during the flowering stage significantly altered the species composition of the rhizosphere microorganisms of broomcorn millet. Among them, the relative abundances of beneficial microorganisms such as Nitrosospira, Coniochaeta, Diversispora, Gigaspora, Glomus, and Rhizophagus increased significantly. Drought stress significantly affects the metabolic pathways of rhizosphere microorganisms. The relative abundances of genes associated with prokaryotes, glycolysis/gluconeogenesis, and other metabolic process (e.g., ribosome biosynthesis, amino sugar and nucleotide sugar metabolism, and fructose and mannose metabolism) increased significantly. Additionally, the expression levels of functional genes involved in the phosphorus cycle were markedly upregulated. Drought stress also significantly alters the content of specific rhizosphere soil metabolites (e.g., trehalose, proline). Under drought conditions, broomcorn millet may stabilize the rhizosphere microbial community by inducing its restructuring and recruiting beneficial fungal groups. These community-level changes can enhance element cycling efficiency, optimize symbiotic interactions between broomcorn millet and rhizosphere microorganisms, and ultimately improve the crop’s drought adaptability. Furthermore, the soil metabolome (e.g., trehalose and proline) functions as a pivotal interfacial mediator, orchestrating the interaction network between broomcorn millet and rhizosphere microorganisms, thereby enhancing plant stress tolerance. This study sheds new light on the functional traits of rhizosphere microbiota under drought stress and their mechanistic interactions with host plants. Full article

Background: Basic (region) leucine zippers (bZIPs) make up one of the largest families and are some of the most prevalent evolutionarily conserved transcription factors (TFs) in eukaryotic organisms. Plant bZIP family members are involved in seed germination, vegetative growth, flower development, light response, and various biotic/abiotic stress response pathways. Nevertheless, a detailed identification and genome-wide analysis of the bZIP family genes in broomcorn millet have not been conducted. Methods: In this research, we performed genome-wide identification, phylogenetic analysis, cis-elements analysis, and expression pattern analysis. Results: 144 bZIP transcription factors were identified from the P. miliaceum genome and classified into eleven subfamilies using a phylogenetic analysis. Motif and bZIP domain sequence alignment analyses indicated that the members in each subfamily were relatively conserved. Furthermore, a promoter analysis revealed that bZIP transcription factor family genes were responsive to multiple hormones and environmental stresses. Additionally, cis-element MYB binding sites were identified in the promoters of most PmbZIP genes. A gene expression analysis showed that 18 PmbZIP genes were differentially expressed during seed germination in salt stress, with 7 being significantly downregulated and 11 upregulated, thus suggesting that these PmbZIP genes may play an important role in the salt stress response and seed germination. Conclusions: Current research provides valuable information for further functional analyses of the PmbZIP gene family and as a reference for future studies on broomcorn millet’s stress response. Full article

Background: Broomcorn millet (Panicum miliaceum L.), a drought-tolerant C4 crop, is crucial for agricultural resilience in arid regions. Lipoxygenases (LOXs), key enzymes in plant stress responses, have not been studied in broomcorn millet. This study aimed to identify LOX genes in broomcorn millet and elucidate their role in drought tolerance. Methods: We employed bioinformatics and physiological analyses to identify LOX genes in broomcorn millet. Expression profiles were assessed in different organs, and drought stress responses were evaluated in tolerant (HSZ, YXDHM) and sensitive (YS10) varieties. Antioxidant enzyme activities (SOD, POD, CAT) and malondialdehyde (MDA) levels were measured. Results: Twelve LOX genes were identified, classified into three subfamilies, and mapped across seven chromosomes. These genes contained stress-responsive cis-elements and showed organ-specific expression, with PmLOX5 exhibiting no detectable expression. Under drought stress, tolerant varieties showed elevated antioxidant activities and reduced MDA accumulation. PmLOX2, a homolog of Arabidopsis AtLOX1/AtLOX5, was significantly induced in tolerant varieties, correlating with enhanced antioxidant capacity and reduced oxidative damage. Conclusions:PmLOX genes, particularly PmLOX2, play a pivotal role in drought tolerance by modulating ROS scavenging and membrane protection. This study provides a foundation for leveraging LOX genes to improve drought resilience in broomcorn millet and related crops. Full article

Cereal crops are important staple foods, and their defense metabolites hold significant research importance. In this study, we employed LC-MS-based untargeted and widely-targeted metabolomics to profile the leaf metabolome of nine cereal species, including rice, wheat, maize, barley, sorghum, common oat, foxtail millet, broomcorn millet, and adlay. A total of 9869 features were detected, among them, 1131 were annotated, encompassing 18 classes such as flavonoids, lipids, and alkaloids. Results revealed that 531 metabolites were detected in all species, while each cereal crop possessed 4 to 12 unique metabolites. Focusing on defense metabolites, we identified eight benzoxazinoids uniquely present in maize, wheat, and adlay. Hierarchical clustering based on metabolite abundance divided all metabolites into nine clusters, and subsequent pathway enrichment analysis revealed that the stress-related flavonoid biosynthesis pathway was enriched in multiple clusters. Further analysis showed that four downstream compounds of HBOA (2-hydroxy-1,4-benzoxazin-3-one) in the benzoxazinoid biosynthesis pathway were enriched in maize. Wheat uniquely accumulated the 4′-methylated product of tricin, trimethoxytricetin, whereas adlay accumulated the tricin precursor tricetin in the flavonoid biosynthesis pathway. In summary, this study elucidates the metabolic diversity in defense metabolites among various cereal crops, providing valuable background information for the improvement of stress resistance in cereal crops. Full article

During the Middle-to-Late Neolithic period (7000–3800 BP), Shaanxi Province served as a critical juncture in the transmission of crops. Foxtail millet (Setaria italica), broomcorn millet (Panicum miliaceum), and rice (Oryza sativa) spread westwards into the Gansu–Qinghai region and southwards into the Sichuan basin, whilst wheat (Triticum aestivum) and barley (Hordeum vulgare) were transmitted through the Shaanxi region to the middle and lower Yellow River regions. Neolithic settlements are found in all three of the main geomorphic settings in Shaanxi: the Loess Plateau, plains, and mountainous areas. While the extent to which crop diffusion and distribution were influenced by environmental changes has previously been highlighted, the strategies of crop utilization in different geomorphic contexts have not been specified. Based on crop-remains data from 33 archaeological sites in Shaanxi, this study uses statistical modeling and ArcGIS-based spatial analysis to investigate prehistoric crop utilization in Shaanxi during the Neolithic period and its environmental determinants. Our results indicate the following: (1) The dominant crops in the Neolithic Shaanxi were foxtail millet and broomcorn millet, with the proportion of foxtail millet increasing over time. (2) The Guanzhong Plain was the earliest region in Shaanxi to adopt millet and rice (~7000–3800 BP). Subsequently, millet and rice had influenced the Qinba Mountains by ~5000 BP at the latest. By ~3800 BP, millet had affected the entire northern Shaanxi Plateau, with rice only found at the Shimao site around 4000 BP. Finally, wheat and barley influenced the Guanzhong region and the Qinba region in Shaanxi around 4000 BP. In addition, rice, wheat, and barley mainly enhanced agricultural diversity in the Guanzhong Plain and Qinba Mountains but had limited impact in the Northern Plateau, where cattle and sheep have enriched subsistence strategies since about 4500 BP. (3) Environmental factors affected the distribution of crops to different extents—elevation and river proximity had minimal effects on foxtail millet and broomcorn millet but significantly influenced the presence of rice, wheat, and barley. These factors led to a spatial pattern where millet dominated in the Northern Plateau, while the Guanzhong Plain and Qinba Mountains developed mixed farming systems incorporating all four seed types. This study provides new insights into the environmental mechanisms influencing crop diffusion and prehistoric human adaptation during the Neolithic period in Shaanxi. Full article

Broomcorn millet (Panicum miliaceum L.) is one of the earliest crops, domesticated nearly 8000 years ago in northern China. It gradually spread across the entire Eurasian continent, as well as to America and Africa, with recent improvement in various reproductive and vegetative traits. To identify the genes that were selected during the domestication and improvement processes, we performed a comparative transcriptome analysis based on wild types, landraces, and improved cultivars of broomcorn millet at both seeding and filling stages. The variations in gene expression patterns between wild types and landraces and between landraces and improved cultivars were further evaluated to explore the molecular mechanisms underlying the domestication and improvement of broomcorn millet. A total of 2155 and 3033 candidate genes involved in domestication and a total of 84 and 180 candidate genes related to improvement were identified at seedling and filling stages of broomcorn millet, respectively. The annotation results suggested that the genes related to metabolites, stress resistance, and plant hormones were widely selected during both domestication and improvement processes, while some genes were exclusively selected in either domestication or improvement stages, with higher selection pressure detected in the domestication process. Furthermore, some domestication- and improvement-related genes involved in stress resistance either lost their functions or reduced their expression levels due to the trade-offs between stress resistance and productivity. This study provided novel genetic materials for further molecular breeding of broomcorn millet varieties with improved agronomic traits. Full article

Broomcorn millet (Panicum miliaceum L.) is a crop with a good ability to adapt to the environment. Over 8800 accessions have been collected in the national gene bank of China. The huge quantity of germplasms made it difficult for analysis and evaluation. Although a broomcorn millet core collection (CC) comprising 780 accessions was established, the number is still too large for researchers to explore in depth. In this study, the genetic diversity of 634 broomcorn millet accessions from the core collection was analyzed based on SSR markers. A mini-core collection (MC) containing 256 accessions was extracted. The mini-core collection accounted for less than half of the original core collection and only about 2.8% of the total resources but still provided a good representation. In addition, the results of this study validated that Shanxi is the origin of broomcorn millet, and accessions from the South region may contain novel genes. In conclusion, this study provides a comprehensive characterization of the genetic diversities of broomcorn millet core collection in China. Moreover, an MC may aid in reasonably and efficiently selecting materials for broomcorn millet breeding as researchers could screen for aimed genetic characters within a smaller scope. Full article

Broomcorn millet (Panicum miliaceum) is among the earliest domesticated staple crops in the world’s agricultural history and facilitated the development of several early agrarian cultures, particularly those originating in northern China. However, the propagation route of broomcorn millet in China from the Middle Ages to the present remains unclear. The aim of this study is to explore the genetic affinity between ancient and modern millet samples, trace the genetic origins and diffusion pathways of broomcorn millet, and provide insights into its domestication and spread. To achieve this, we sequence ancient DNA from broomcorn millet remains excavated from the Chashan Village cemetery (AD 691) in Gansu Province, China. Phylogenetic and population genetic analyses, integrating ancient and modern millet genomes, reveal a close genetic relationship between ancient millet and contemporary millet from Ningxia Province (445 km away from Chashan Village), suggesting a potential origin for the Chashan millet. This finding aligns with the tomb’s epitaph, which documents the reburial of the tomb’s owner, who was originally buried in Ningxia, and provides important archaeological evidence for understanding the interaction between geopolitical dynamics and the natural environment in northwest China during the late seventh century. Furthermore, outgroup-f3 and D statistics evidence suggests substantial genetic interactions between ancient millet and modern varieties from the Loess Plateau, Huang-Huai-Hai Plain, and Northeast Plain, indicating the dispersal route of broomcorn millet, along with human migration routes, from the northwest to northern China and ultimately to the northeast region, starting from the Middle Ages onward. This study enhances our understanding of millet’s genetic history, offers a novel perspective on burial archaeology, and provides valuable insights into the origins, domestication, and diffusion of broomcorn millet. Full article

This study aimed to elucidate responses of the bacterial structure and diversity of the rhizosphere in flowering broomcorn millet after rehydration following drought stress. In this study, the broomcorn millet varieties ‘Hequ red millet’ (A1) and ‘Yanshu No.10′ (A2), known for their different drought tolerance levels, were selected as experimental materials. The plants were subjected to rehydration after drought stress at the flowering stage, while normal watering (A1CK and A2CK) served as the control. Soil samples were collected at 10 days (A11, A21, A1CK1, and A2CK1) and 20 days (A12, A22, A1CK2, and A2CK2) after rehydration. High-throughput sequencing technology was employed to investigate the variations in bacterial community structure, diversity, and metabolic functions in the rhizosphere of the broomcorn millet at different time points following rehydration. The findings indicated that the operational taxonomic units (OTUs) of bacteria in the rhizosphere of broomcorn millet were notably influenced by the duration of treatment, with a significant decrease in OTUs observed after 20 days of rehydration. However, bacterial Alpha diversity was not significantly impacted by rehydration following drought stress. The bacterial community in the rhizosphere of broomcorn millet was mainly composed of Actinobacteria and Proteobacteria. After rewatering for 10 to 20 days after drought stress, the abundance of Sphingomonas and Aeromicrobium in the rhizosphere soil of the two varieties of broomcorn millet decreased gradually. Compared with Yanshu No.10, the abundance of Pseudarthrobacter in the rhizosphere of Hequ red millet gradually increased. A Beta diversity analysis revealed variations in the dissimilarities of the bacterial community which corresponded to different rehydration durations. The relative abundance of bacterial metabolic functions in the rhizosphere of broomcorn millet was lower after 20 days of rehydration, compared to measurements after 10 days of rehydration. This observation might be attributed to the exchange of materials between broomcorn millet and microorganisms during the initial rehydration stage to repair the effects of drought, as well as to the enrichment of numerous microorganisms to sustain the stability of the community structure. This study helps to comprehend the alterations to the bacterial structure and diversity in the rhizosphere of broomcorn millet following drought stress and rehydration. It sheds light on the growth status of broomcorn millet and its rhizosphere microorganisms under real environmental influences, thereby enhancing research on the drought tolerance mechanisms of broomcorn millet. Full article

China has a 9000-year-long history of cereal-based alcohol production, with the use of molds (filamentous fungi) likely being one of the earliest fermentation techniques. This method later developed into the uniquely East Asian qu (koji) starter compound, containing grains, molds, yeasts, and bacteria. Recent studies have revealed that this method was already widely applied during the Neolithic period. However, much less is known about its development during the early dynastic times, and our knowledge of this innovation has mainly relied on textual materials. Here, we present direct evidence, based on microbotanical, microbial, and chemical analyses, for the fermentation method of a 2300-year-old liquid preserved in a sealed bronze bottle unearthed in a Qin tomb at Yancun, Shaanxi. The results of this research suggest that this liquid is likely a fermented beverage made from wheat/barley, rice, Job’s tears, broomcorn millet, and pulses. The fermentation starter may have been a cereal-based qu, consisting of a wide range of microorganisms, including molds (Aspergillus and Monascus), yeasts, and bacteria. Our findings suggest that the tradition of selecting suitable grains and microbial communities for brewing alcohol, possibly with a maiqu starter (primarily wheat/barley-based qu), may have been well established more than two thousand years ago. Full article

Exploring crop yield stability and the relationship between the water–fertilizer effect and annual precipitation type in a broomcorn millet–potato–spring corn rotation system under long-term fertilization on chestnut cinnamon soil in loess tableland can provide a scientific basis for rational fertilization in the northwest Shanxi region in years with different precipitation. This study was based on a 33-year long-term fertilizer experiment, using four fertilizer treatments: no fertilizer as control (CT), single fertilizer nitrogen (N), single organic fertilizer (M), and nitrogen fertilizer with organic fertilizer (NM). The results showed that broomcorn millet and maize had the highest yield in wet years, while potatoes had the highest yield in normal years and the yield under NM treatment was the highest. The sustainable yield index (SYI) values for potato and maize were higher than the SYI for the broomcorn millet during years with different precipitation and the SYI for the NM treatment was the highest. The water use efficiency of NM treatment was the highest. The yield of broomcorn millet and maize was affected by nitrogen fertilizer, organic fertilizer, and precipitation during the growth period, while the potato yield was mainly affected by nitrogen fertilizer and organic fertilizer. Therefore, the rotation of potato–maize and the rational allocation of organic and inorganic fertilizer (NM) is the best planting system in this region. Full article

The spatio-temporal evolution of human subsistence strategies and their driving force in prehistoric Eurasia has received increasing attention with the rapid development of archaeobotanical, zooarchaeological, and isotopic research in recent decades, while studies focusing on the historical periods are relatively absent. In the Hexi Corridor in northwestern China, which has served as a hub for trans-Eurasian exchange since the late prehistoric period, archaeobotanical data have been reported from numerous Neolithic and Bronze Age sites, as well as sites from the Wei and Jin Dynasties (220–420 BCE) to the Yuan Dynasty (1271–1368 BCE). However, no archaeobotanical study has been conducted at sites of the Han Dynasty (202 BCE–220 CE), a crucial period connecting prehistoric and historical eras. In this study, we identified 32475 plant remains, including 31,463 broomcorn millets, 233 foxtail millets, and 780 weeds, from the Shuangdun North Beacon Tower (SDNBT) site of the Han Dynasty at the western end of the Hexi Corridor, suggesting that millets played a prominent part in human subsistence strategies in the area during this period. In addition, sheep, chicken, dog, horse, and rodent remains were also collected at the site. By applying a multi-disciplinary approach, we detected a remarkable change in plant-based subsistence in the ancient Hexi Corridor. Specifically, the importance of millet crops, compared with other crops (especially barley and wheat), in plant-based subsistence declined from the Late Neolithic to the Bronze Age; it apparently improved during the Han and Sui-Tang Dynasties (581–907 CE), when agricultural empires controlled the area, and then declined again during the Wei, Jin, Northern, and Southern Dynasties (220–581 CE) and the Song-Yuan Dynasty (960–1368 CE), when nomadic regimes controlled the area. Climate change, trans-Eurasian exchanges, and geopolitical shifts influenced the diachronic change in plant-based subsistence from the Late Neolithic to the historical periods in the Hexi Corridor. Full article

The flowering stage is a critical period for water sensitivity and quality formation of broomcorn millets. However, the effects and mechanisms of drought stress on the quality formation of broomcorn millets are not clear. We used the drought-resistant variety Hequ red millet (H) and the drought-sensitive variety Yanshu No. 10 (Y) were used as materials for drought stress treatment during the flowering stage, metabolomics and physiological methods were used to study the differences in protein, starch, amino acids, medium and medium-long chain fatty acids, and their response characteristics to drought in broomcorn millet. The results showed that different genotypes of broomcorn millets exhibited different response mechanisms in the face of drought stress. In Hequ red millet, drought stress significantly increased the contents of amylopectin (2.57%), pyridoxine (31.89%), and anthocyanin, and significantly decreased the contents of water-soluble protein (5.82%), glutelin (10.07%), thiamine (14.95%) and nicotinamide (23.01%). In Yanshu No. 10, drought significantly decreased amylose by 6.05%, and significantly increased riboflavin and nicotinamide contents by 21.11% and 32.59%. Correlation analysis showed that total starch and amylose were highly significantly positively correlated with methyl palmitate; negatively correlated with amylopectin, vitamins, proteins, free amino acids, and medium-long chain fatty acids; and amylopectin was significantly positively correlated with water-soluble protein, riboflavin, and pyridoxine. Water-soluble protein and glutelin were significantly positively correlated with most free amino acids, medium-long chain fatty acids, and nicotinamide. Thiamine showed significant positive correlation with nicotinamide and significant negative correlation with pyridoxine. Riboflavin was significantly positively correlated with nicotinamide, pyridoxine, and water-soluble protein, and pyridoxine was significantly positively correlated with water-soluble protein. Hequ red millet transforms into amylopectin by consuming water-soluble protein and glutelin, and improves drought resistance by accumulating pyridoxine, and changes its physicochemical properties by decreasing the content of amylose and protein and elevating the content of amylopectin. Yanshu No. 10 resisted drought by catabolizing lipids to produce fatty acids and by consuming amylose for conversion into other metabolites. The present study helps to understand the response of the nutritional quality of millets to drought stress at the flowering stage and provides a theoretical basis for the selection and breeding of superior varieties of millets and drought resistance research. Full article

Drought stress restricts plant growth and development. The flowering stage is a period of abundant microbial diversity in the rhizosphere of broomcorn millet. However, the diversity and community structure of rhizosphere fungi during the flowering stage of broomcorn millet and the response mechanism to drought stress are still unclear. In this study, two broomcorn millet varieties, ‘Hequ red millet’ (A1) and ‘Yanshu No.10′ (A2), with different drought resistances, were used as experimental materials. Using the pot water control method, drought treatment at the flowering stage was carried out, and normal watering (A1CK, A2CK) was used as the control. High-throughput sequencing technology was used to study the diversity and structural changes in rhizosphere fungi in broomcorn millet. The results show that the number of fungi OTUs in the A1, A2, A1CK and A2CK samples were 445, 481, 467 and 434, respectively, of which 331 OTUs were shared by all groups. The fungal community in the rhizosphere of broomcorn millet was mainly composed of Ascomycota and Basidiomycota. Drought treatment significantly reduced the abundance of Mortierella and significantly increased the abundance of Phoma. The abundance of Nectriaceae in the rhizosphere soil of ‘Hequ Red millet’ was significantly increased. The abundance of Pseudocercospora in the rhizosphere soil of ‘Yanshu No.10′ was higher, and the lower was Hypocreales and Nectriaceae. However, there was no significant difference in the alpha diversity of fungal communities in the four treatments, and the fungal community structure between A2 and A1CK was more similar, whereas the difference between A1 and A2CK was larger. Correlation analysis showed that drought stress had little effect on the interaction of rhizosphere fungi, and metabolic functions such as nucleotide metabolism and electron transport in rhizosphere fungi accounted for a relatively high proportion. The results show that the diversity and community structure of rhizosphere fungi were less affected by drought, which may have been due to the close interaction between species, which made the fungal community more stable under drought stress, and the difference in planting varieties may have affected the enriched rhizosphere fungal species. Full article

The eastern Baltic region represents the world’s most northerly limit of successful broomcorn millet (Panicum miliaceum) (hereafter, millet) cultivation in the past, yet this crop has been almost forgotten today. The earliest millet in the eastern Baltic region has been identified from macrobotanical remains which were directly dated to ca 1000 BCE. Between 800 and 500 BCE, millet was one of the major staple foods in the territory of modern-day Lithuania. Millet continued to play an important role in past agriculture up until the 15th century, with its use significantly declining during the following centuries. This paper analyses both the archaeobotanical records and written sources on broomcorn millet cultivation in Lithuania from its first arrival all the way through to the 19th century. The manuscript reviews the evidence of millet cultivation in the past as documented by archaeobotanical remains and historical accounts. In light of fluctuating records of millet cultivation through time, we present the hypothetical reasons for the decline in millet use as human food. The paper hypothesizes that the significant decrease in broomcorn millet cultivation in Lithuania from the 15th century onwards was likely influenced by several factors, which include climate change (the Little Ice Age) and the agricultural reforms of the 16th century. However, more detailed research is required to link past fluctuations in millet cultivation with climatic and historical sources, thus better understanding the roots of collapsing crop biodiversity in the past. Full article