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Search Results (126)

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48 pages, 1556 KiB  
Review
Extemporaneous Compounding, Pharmacy Preparations and Related Product Care in the Netherlands
by Herman J. Woerdenbag, Boy van Basten, Christien Oussoren, Oscar S. N. M. Smeets, Astrid Annaciri-Donkers, Mirjam Crul, J. Marina Maurer, Kirsten J. M. Schimmel, E. Marleen Kemper, Marjolijn N. Lub-de Hooge, Nanno Schreuder, Melissa Eikmann, Arwin S. Ramcharan, Richard B. Lantink, Julian Quodbach, Hendrikus H. Boersma, Oscar Kelder, Karin H. M. Larmené-Beld, Paul P. H. Le Brun, Robbert Jan Kok, Reinout C. A. Schellekens, Oscar Breukels, Henderik W. Frijlink and Bahez Garebadd Show full author list remove Hide full author list
Pharmaceutics 2025, 17(8), 1005; https://doi.org/10.3390/pharmaceutics17081005 - 31 Jul 2025
Viewed by 303
Abstract
Background/Objectives: In many parts of the world, pharmacists hold the primary responsibility for providing safe and effective pharmacotherapy. A key aspect is the availability of appropriate medicines for each individual patient. When industrially manufactured medicines are unsuitable or unavailable, pharmacists can prepare [...] Read more.
Background/Objectives: In many parts of the world, pharmacists hold the primary responsibility for providing safe and effective pharmacotherapy. A key aspect is the availability of appropriate medicines for each individual patient. When industrially manufactured medicines are unsuitable or unavailable, pharmacists can prepare tailor-made medicines. While this principle applies globally, practices vary between countries. In the Netherlands, the preparation of medicines in pharmacies is well-established and integrated into routine healthcare. This narrative review explores the role and significance of extemporaneous compounding, pharmacy preparations and related product care in the Netherlands. Methods: Pharmacists involved in pharmacy preparations across various professional sectors, including community and hospital pharmacies, central compounding facilities, academia, and the professional pharmacists’ organisation, provided detailed and expert insights based on the literature and policy documents while also sharing their critical perspectives. Results: We present arguments supporting the need for pharmacy preparations and examine their position and role in community and hospital pharmacies in the Netherlands. Additional topics are discussed, including the regulatory and legal framework, outsourcing, quality assurance, standardisation, education, and international context. Specific pharmacy preparation topics, often with a research component and a strong focus on product care, are highlighted, including paediatric dosage forms, swallowing difficulties and feeding tubes, hospital-at-home care, reconstitution of oncolytic drugs and biologicals, total parenteral nutrition (TPN), advanced therapy medicinal products (ATMPs), radiopharmaceuticals and optical tracers, clinical trial medication, robotisation in reconstitution, and patient-centric solid oral dosage forms. Conclusions: The widespread acceptance of pharmacy preparations in the Netherlands is the result of a unique combination of strict adherence to tailored regulations that ensure quality and safety, and patient-oriented flexibility in design, formulation, and production. This approach is further reinforced by the standardisation of a broad range of formulations and procedures across primary, secondary and tertiary care, as well as by continuous research-driven innovation to develop new medicines, formulations, and production methods. Full article
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18 pages, 8296 KiB  
Article
Survival Is Skin Deep: Toughness of the Outer Cactus Stem with Insights for Technical Envelopes
by Patricia Soffiatti, Natália O. Bonfante, Maria Clara L. Jaculiski and Nick P. Rowe
Biomimetics 2025, 10(8), 487; https://doi.org/10.3390/biomimetics10080487 - 23 Jul 2025
Viewed by 409
Abstract
Cacti are of interest for new bio-inspired technologies because of their remarkable adaptations to extreme environments. Recently, they have inspired functional designs from nano fibres to optimised buildings and architectures. We investigate the diversity of cactus skin properties in terms of toughness and [...] Read more.
Cacti are of interest for new bio-inspired technologies because of their remarkable adaptations to extreme environments. Recently, they have inspired functional designs from nano fibres to optimised buildings and architectures. We investigate the diversity of cactus skin properties in terms of toughness and resistance to cutting damage. Cacti are well known for their extreme adaptations to harsh environments, with soft, fleshy stems that expand and contract with water uptake and storage. This functioning is made possible by an extendable outer envelope (skin) and a fluted 3-dimensional structure of the stem. We explore the mechanical toughness and underlying structural organisation of the cactus skin in four species of cactus showing different growth forms. The toughness properties of the cactus skin is only one part of a multi-functional structure for surviving in extreme environments. The study suggests that survival involves a relatively “light” investment of tough materials in the outer envelope instead of a rigid “defensive” layer. This is capable of elastic deformation and enables water storage in challenging, arid environments. The main purpose of this article is to demonstrate the diversity of skin toughness and underlying structures in the biological world as providing potential new designs for technical envelopes. Full article
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21 pages, 3527 KiB  
Article
Effects of Environmental Temperature Variation on the Spatio-Temporal Shoaling Behaviour of Adult Zebrafish (Danio rerio): A Two- and Three-Dimensional Analysis
by Mattia Toni, Flavia Frabetti, Gabriella Tedeschi and Enrico Alleva
Animals 2025, 15(14), 2006; https://doi.org/10.3390/ani15142006 - 8 Jul 2025
Viewed by 345
Abstract
Global warming is driving significant changes in aquatic ecosystems, where temperature fluctuations influence biological processes across multiple levels of organisation. As ectothermic organisms, fish are particularly susceptible, with even minor thermal shifts affecting their metabolism, behaviour, and overall fitness. Understanding these responses is [...] Read more.
Global warming is driving significant changes in aquatic ecosystems, where temperature fluctuations influence biological processes across multiple levels of organisation. As ectothermic organisms, fish are particularly susceptible, with even minor thermal shifts affecting their metabolism, behaviour, and overall fitness. Understanding these responses is essential for evaluating the ecological and evolutionary consequences of climate change. This study investigates the effects of acute (4-day) and chronic (21-day) exposure to three temperature regimes—18 °C (low), 26 °C (control), and 34 °C (high)—on the spatio-temporal shoaling behaviour of adult zebrafish (Danio rerio). Groups of four fish were tested for six minutes in water maintained at the same temperature as their prior acclimation. Shoaling behaviour was assessed by analysing shoal structure—encompassing shoal dimensions and cohesion—as well as spatial positioning. Parameters measured included inter-fish distance, shoal volume, shoal area, homogeneity index, distance to the centroid, and the shoal’s vertical and horizontal distribution. Results revealed complex behavioural changes influenced by both temperature and duration of exposure. At 18 °C, zebrafish showed a marked preference for the bottom zone and exhibited no significant temporal modulation in exploratory behaviour—patterns indicative of heightened anxiety-like responses. In contrast, exposure to 34 °C resulted in increased shoal cohesion, particularly under chronic conditions, and a progressive increase in environmental exploration over the six-minute test period. This enhancement in exploratory activity was especially evident when compared to the first minute of the test and was characterised by greater vertical movement—reflected in the increased use of the upper zone—and broader horizontal exploration, including more frequent occupation of peripheral areas. These findings align with previous research linking thermal variation to neurobiological and proteomic alterations in zebrafish. By elucidating how temperature modulates social behaviour in ectotherms, this study offers valuable insights into the potential behavioural impacts of climate change on aquatic ecosystems. Full article
(This article belongs to the Section Aquatic Animals)
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27 pages, 1153 KiB  
Review
Integrated Biomimetics: Natural Innovations for Urban Design, Smart Technologies, and Human Health
by Ocotlán Diaz-Parra, Francisco R. Trejo-Macotela, Jorge A. Ruiz-Vanoye, Jaime Aguilar-Ortiz, Miguel A. Ruiz-Jaimes, Yadira Toledo-Navarro, Alejandro Fuentes Penna, Ricardo A. Barrera-Cámara and Julio C. Salgado-Ramirez
Appl. Sci. 2025, 15(13), 7323; https://doi.org/10.3390/app15137323 - 29 Jun 2025
Viewed by 686
Abstract
Biomimetics has emerged as a transformative interdisciplinary approach that harnesses nature’s evolutionary strategies to develop sustainable solutions across diverse fields. This study explores its integrative role in shaping smart cities, advancing artificial intelligence and robotics, innovating biomedical applications, and enhancing computational design tools. [...] Read more.
Biomimetics has emerged as a transformative interdisciplinary approach that harnesses nature’s evolutionary strategies to develop sustainable solutions across diverse fields. This study explores its integrative role in shaping smart cities, advancing artificial intelligence and robotics, innovating biomedical applications, and enhancing computational design tools. By analysing the evolution of biomimetic principles and their technological impact, this work highlights how nature-inspired solutions contribute to energy efficiency, adaptive urban planning, bioengineered materials, and intelligent systems. Furthermore, this paper discusses future perspectives on biomimetics-driven innovations, emphasising their potential to foster resilience, efficiency, and sustainability in rapidly evolving technological landscapes. Particular attention is given to neuromorphic hardware, a biologically inspired computing paradigm that mimics neural processing through spike-based communication and analogue architectures. Key components such as memristors and neuromorphic processors enable adaptive, low-power, task-specific computation, with wide-ranging applications in robotics, AI, healthcare, and renewable energy systems. Furthermore, this paper analyses how self-organising cities, conceptualised as complex adaptive systems, embody biomimetic traits such as resilience, decentralised optimisation, and autonomous resource management. Full article
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28 pages, 20870 KiB  
Article
Reproductive Life-History Traits of Two Aggregating Reef-Associated Groupers (Red Hind and Yellowfin Grouper) in Marine Protected Areas of Southern Gulf of Mexico
by Thierry Brulé, Doralice Caballero-Arango, Virginia Nóh-Quiñones, Armin Tuz-Sulub, Enrique Puerto-Novelo, Teresa Colás-Marrufo and Ximena Renán
Diversity 2025, 17(7), 452; https://doi.org/10.3390/d17070452 - 26 Jun 2025
Viewed by 1354
Abstract
Overexploitation is the main anthropogenic threat to groupers (Epinephelidae) that aggregate to spawn. Fishing negatively affects their reproductive success and indirectly harms fishery economic yield. In the southern Gulf of Mexico, grouper catches, which include thirteen species, are in decline. A lack of [...] Read more.
Overexploitation is the main anthropogenic threat to groupers (Epinephelidae) that aggregate to spawn. Fishing negatively affects their reproductive success and indirectly harms fishery economic yield. In the southern Gulf of Mexico, grouper catches, which include thirteen species, are in decline. A lack of biological information on each exploited species prevents optimising fishery management. Using histological examination of the gonads, the reproductive traits of red hind Epinephelus guttatus and yellowfin grouper Mycteroperca venenosa were studied from January 2008 to October 2009. Collections were made at two reef systems (Alacranes Reef and Bajos del Norte) on the continental shelf of the Yucatan Peninsula, Mexico, where these species form transient spawning aggregations. The results confirmed that previously identified spawning aggregation sites at both reefs constitute productive seasonal and perennial “hotspots” for both groupers; they spawn annually between January and April. Females of these protogynous hermaphroditic species exhibit a reproductive strategy characterised by asynchronous ovarian development organisation and ovulation. Sex ratios and maximum sizes at each reef suggest that populations of both groupers had a good conservation status as of the late 2000s. Both reefs are now marine protected areas, and a discussion is made of the consequent possible benefits to grouper population conservation and sustainability in the southern Gulf of Mexico. Full article
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23 pages, 2623 KiB  
Article
Chromosome-Contiguous Ancylostoma duodenale Reference Genome from a Single Archived Specimen Elucidates Human Hookworm Biology and Host–Parasite Interactions
by Neil D. Young, Yuanting Zheng, Sunita B. Sumanam, Tao Wang, Jiangning Song, Bill C. H. Chang and Robin B. Gasser
Int. J. Mol. Sci. 2025, 26(12), 5576; https://doi.org/10.3390/ijms26125576 - 11 Jun 2025
Viewed by 533
Abstract
Soil-transmitted helminths (STHs) are parasitic nematodes that infect humans, particularly in tropical and subtropical regions, where they contribute substantially to neglected tropical diseases (NTDs). Among them, hookworms (Ancylostoma duodenale, Necator americanus and Ancylostoma ceylanicum) cause substantial morbidity, leading to anaemia, [...] Read more.
Soil-transmitted helminths (STHs) are parasitic nematodes that infect humans, particularly in tropical and subtropical regions, where they contribute substantially to neglected tropical diseases (NTDs). Among them, hookworms (Ancylostoma duodenale, Necator americanus and Ancylostoma ceylanicum) cause substantial morbidity, leading to anaemia, malnutrition, and developmental impairment. Despite the global impact of hookworm disease, genomic research on A. duodenale has lagged behind that of other hookworms, limiting comparative and molecular biological investigations. Here, we report the first chromosome-level reference genome of A. duodenale, assembled from a single adult specimen archived in ethanol at −20 °C for more than 27 years. Using third-generation sequencing (PacBio Revio, Menlo Park, CA, USA, Oxford Nanopore, Oxford, UK), Hi-C scaffolding, and advanced computational tools, we produced a high-quality 319 Mb genome, filling a critical gap in hookworm genomics. Comparative analyses with N. americanus and the related, free-living nematode Caenorhabditis elegans provided new insights into genome organisation, synteny, and specific adaptations. While A. duodenale exhibited strong chromosomal synteny with N. americanus, its limited synteny with C. elegans highlights its distinct parasitic adaptations. We identified 20,015 protein-coding genes, including conserved single-copy orthologues (SCOs) linked to host–pathogen interactions, immune evasion and essential biological processes. The first comprehensive secretome analysis of A. duodenale revealed a diverse repertoire of excretory/secretory (ES) proteins, including immunomodulatory candidates predicted to interact with host structural and immune-related proteins. This study advances hookworm genomics, establishes a basis for the sequencing of archival specimens, and provides fundamental insights into the molecular biology of A. duodenale. The genomic resource for this hookworm species creates new opportunities for diagnostic, therapeutic, and vaccine development within a One Health framework. It complements recent epidemiological work and aligns with the WHO NTD roadmap (2021–2030) and Sustainable Development Goal 3.3. Full article
(This article belongs to the Special Issue Parasite Biology and Host-Parasite Interactions: 2nd Edition)
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17 pages, 849 KiB  
Review
Re-Assessing the Importance of Evidence-Based Inputs for Positive Zoo and Aquarium Animal Welfare Outputs
by Paul Rose and Xavier Manteca
J. Zool. Bot. Gard. 2025, 6(2), 32; https://doi.org/10.3390/jzbg6020032 - 10 Jun 2025
Viewed by 970
Abstract
The welfare of animals in zoos has come under increasing scrutiny as public awareness grows around the biological needs of captive species. It is also becoming clear that promoting positive welfare experiences upholds population management and conservation aims. This paper re-evaluates current welfare [...] Read more.
The welfare of animals in zoos has come under increasing scrutiny as public awareness grows around the biological needs of captive species. It is also becoming clear that promoting positive welfare experiences upholds population management and conservation aims. This paper re-evaluates current welfare frameworks in zoological institutions, advocating for evidence-based practices, multi-dimensional welfare metrics, and greater emphasis on species-specific needs, as well as the importance of input-based approaches to assess the welfare of zoo animals. By evaluating the limitations of current welfare practices (e.g., a lack of species-specific assessment protocols or sound husbandry evidence to base measures on) and presenting potential areas for improvement, this paper identifies ways that sound baselines for meaningful zoo animal welfare outputs can be created. Although current welfare policies from large zoo membership organisations stipulate assessment of welfare outputs as key to improving animal welfare standards, such outputs can only be positive if inputs are species-specific and relevant to the animals being housed. Practices such as the use of environmental enrichment (for example) need to be further refined to ensure they provide meaningful outputs (for the individuals) from the inputs that create them. Understanding the animal’s needs to ensure that the goal of enrichment is clear benefits both the animal who is provided with the enrichment and the human caregivers as husbandry and management becomes easier. A focus on welfare outputs is commendable and (especially when considering emotional outputs) is indeed a gold standard to aim for, yet we must not lose sight of striving for improvements to housing, husbandry, and species-specific care. Without such fundamental support from correct inputs, outputs are unlikely to be truly (or meaningfully) positive. Therefore, consistent re-examination of inputs is required to make sure they uphold an individual’s attainment of good welfare. Full article
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14 pages, 1533 KiB  
Article
Cholesterol Sulfate in Biological Membranes: A Biophysical Study in Cholesterol-Poor and Cholesterol-Rich Biomimetic Models
by Ana Reis, Maria João Sarmento, Mariana Ferreira, Paula Gameiro and Victor de Freitas
Membranes 2025, 15(6), 159; https://doi.org/10.3390/membranes15060159 - 24 May 2025
Viewed by 1017
Abstract
As a surface-located molecule in biological membranes, cholesterol sulphate (CholS) plays a major role in membrane-driven cell–cell processes and events including platelet-cell adhesion, T-cell receptor signalling, sperm–egg interaction, membrane fusion, and skin differentiation. Despite this, little is known about the biophysical implications of [...] Read more.
As a surface-located molecule in biological membranes, cholesterol sulphate (CholS) plays a major role in membrane-driven cell–cell processes and events including platelet-cell adhesion, T-cell receptor signalling, sperm–egg interaction, membrane fusion, and skin differentiation. Despite this, little is known about the biophysical implications of CholS at the membrane in cells and organelles. In this study, we investigate the effect of increasing the content of CholS on the biophysical properties in cholesterol-poor and cholesterol-rich biomimetic models. Data obtained show that increasing amounts of CholS result in a slight increase in anisotropy, evidence for decreased membrane fluidity at higher CholS content (10 mol%) in cholesterol-poor systems but only negligible in rigidified epithelial-like cholesterol-rich systems. On the other hand, incorporation of CholS has an overall increasing ordering effect on membrane organisation and on-surface potential that is influenced by the lipid composition and cholesterol content. Though further research is needed to gain better insights on the (patho)physiological levels of CholS in cells and organelles, our findings are discussed in the context of diet–microbiota–host interactions in membrane-driven events in inflammatory-related disorders. Full article
(This article belongs to the Special Issue Composition and Biophysical Properties of Lipid Membranes)
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14 pages, 1934 KiB  
Article
Discovery and Characterisation of Novel Poly-Histidine-Poly-Glycine Peptides as Matrix Metalloproteinase Inhibitors
by He Wang, Wenchao Cai, Zhiyu Tang, Juanli Fu, Enrico König, Nanwen Zhang, Xiaole Chen, Tianbao Chen and Chris Shaw
Biomolecules 2025, 15(5), 706; https://doi.org/10.3390/biom15050706 - 12 May 2025
Viewed by 501
Abstract
For the first time, two poly-histidine-poly-glycine peptides (pHpG-H5 and pHpG-H7) were identified as promising candidates for matrix metalloproteinase inhibitors. cDNAs encoding pHpG-H5 and pHpG-H7 peptides were isolated from the Atheris squamigera cDNA library constructed using oligo(dT)-primed reverse transcription. Deduced sequences of pHpG peptides [...] Read more.
For the first time, two poly-histidine-poly-glycine peptides (pHpG-H5 and pHpG-H7) were identified as promising candidates for matrix metalloproteinase inhibitors. cDNAs encoding pHpG-H5 and pHpG-H7 peptides were isolated from the Atheris squamigera cDNA library constructed using oligo(dT)-primed reverse transcription. Deduced sequences of pHpG peptides were systematically organised and utilised as templates for synthesising chemical replicates. All synthetic pHpG peptides exhibited inhibitory effects on human matrix metalloproteinase-1 (MMP-1). Spectroscopic analyses and molecular modelling demonstrated that pHpG peptides disrupt zinc ion coordination within the central catalytic domain of MMP-1, thereby inhibiting its enzymatic activity. As a novel peptide inhibitor of matrix metalloproteinase, pHpG-H7 modulates multiple biological processes, such as cell migration and angiogenesis, suggesting significant therapeutic potential. Full article
(This article belongs to the Section Biomacromolecules: Proteins, Nucleic Acids and Carbohydrates)
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24 pages, 7748 KiB  
Article
Investigating the Use of Diagnostic Genes in Integrated Monitoring with a Laboratory and Field Study on Flounder (Platichthys flesus)
by Michelle C. Giltrap, Michael J. Leaver, Kelly White, James G. Wilson, Atiqur Rahman, Adrian Maguire, Aidan D. Meade, Janina Baršiene and Craig D. Robinson
Toxics 2025, 13(3), 203; https://doi.org/10.3390/toxics13030203 - 12 Mar 2025
Viewed by 1003
Abstract
For many years, there has been increasing concern about the effects of the presence of hazardous substances in the environment. The chemical and biological effect (BE) monitoring of these pollutants has proven difficult due to low environmental concentrations, variable bioavailability, and the generalised [...] Read more.
For many years, there has been increasing concern about the effects of the presence of hazardous substances in the environment. The chemical and biological effect (BE) monitoring of these pollutants has proven difficult due to low environmental concentrations, variable bioavailability, and the generalised nature of ecological responses to these substances. The over- or under-expression of key genes has proven to be useful in understanding the molecular mechanisms of the toxicity of contaminants. This study uses a quantitative PCR array to detect the changes in gene expression in flounder livers after exposure to both laboratory- and field-based contaminants. The model contaminants included 17β-estradiol (E2), 3-methylcholanthrene (3-MC), a commercial mixture of polychlorinated biphenyls (PCB, Arochlor), perfluoroctanoic acid (PFOA), and lindane. Multivariate analysis was used to investigate relationships between higher-organisational-level biomarkers, supporting parameters, and genes. A scoring system enabled the visualisation of biological effect responses and contaminants in field samples. Although gene expression was useful for inferring the pathways of toxicity in this organism, we recommend that this array be used in combination with existing and recommended higher-level biomarkers and should not be used as a replacement for traditional biomarkers currently used in monitoring. Full article
(This article belongs to the Special Issue Toxic Pollutants and Ecological Risk in Aquatic Environments)
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24 pages, 6665 KiB  
Article
From Local to Systemic: The Journey of Tick Bite Biomarkers in Australian Patients
by Wenna Lee, Amanda D. Barbosa, Amy Huey-Yi Lee, Andrew Currie, David Martino, John Stenos, Michelle Long, Miles Beaman, Nathan T. Harvey, Nina Kresoje, Patrycja Skut, Peter J. Irwin, Prasad Kumarasinghe, Roy A. Hall, Rym Ben-Othman, Stephen Graves, Tobias R. Kollmann and Charlotte L. Oskam
Int. J. Mol. Sci. 2025, 26(4), 1520; https://doi.org/10.3390/ijms26041520 - 11 Feb 2025
Cited by 1 | Viewed by 2200
Abstract
Tick bites and tick-related diseases are on the rise. Diagnostic tests that identify well-characterised tick-borne pathogens (TBPs) possess limited capacity to address the causation of symptoms associated with poorly characterised tick-related illnesses, such as debilitating symptom complexes attributed to ticks (DSCATT) in Australia. [...] Read more.
Tick bites and tick-related diseases are on the rise. Diagnostic tests that identify well-characterised tick-borne pathogens (TBPs) possess limited capacity to address the causation of symptoms associated with poorly characterised tick-related illnesses, such as debilitating symptom complexes attributed to ticks (DSCATT) in Australia. Identification of local signals in tick-bitten skin that can be detected systemically in blood would have both clinical (diagnostic or prognostic) and research (mechanistic insight) utility, as a blood sample is more readily obtainable than tissue biopsies. We hypothesised that blood samples may reveal signals which reflect relevant local (tissue) events and that the time course of these signals may align with local pathophysiology. As a first step towards testing this hypothesis, we compared molecular signatures in skin biopsies taken from the tick-bite location of human participants, as published in our previous study, together with peripheral blood signatures obtained concurrently. This approach captures differentially expressed molecules across multiple omics datasets derived from peripheral blood (including cellular and cell-free transcriptomics, proteomics, metabolomics, and DNA methylation), and skin biopsies (spatial transcriptomics). Our original data revealed that extracellular matrix organisation and platelet degranulation pathways were upregulated in the skin within 72 h of a tick bite. The same signals appeared in blood, where they then remained elevated for three months, displaying longitudinally consistent alterations of biological functions. Despite the limited sample size, these data represent proof-of-concept that molecular events in the skin following a tick bite can be detectable systemically. This underscores the potential value of blood samples, akin to a liquid biopsy, to capture biomarkers reflecting local tissue processes. Full article
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16 pages, 3526 KiB  
Article
Mice with 16p11.2 Deletion and Duplication Show Alterations in Biological Processes Associated with White Matter
by Tianqi Wang, Megan Sharp, Ilaria Morella, Francesco Bedogni, Vladimir Trajkovski, Riccardo Brambilla and Yasir Ahmed Syed
Int. J. Mol. Sci. 2025, 26(2), 573; https://doi.org/10.3390/ijms26020573 - 11 Jan 2025
Viewed by 1986
Abstract
Deletion and duplication in the human 16p11.2 chromosomal region are closely linked to neurodevelopmental disorders, specifically autism spectrum disorder. Data from neuroimaging studies suggest white matter microstructure aberrations across these conditions. In 16p11.2 deletion and duplication carriers, potential gene dosage effects may impact [...] Read more.
Deletion and duplication in the human 16p11.2 chromosomal region are closely linked to neurodevelopmental disorders, specifically autism spectrum disorder. Data from neuroimaging studies suggest white matter microstructure aberrations across these conditions. In 16p11.2 deletion and duplication carriers, potential gene dosage effects may impact white matter organisation, contributing to phenotypes including impaired cognition. However, the biological mechanisms underlying this white matter pathology remain unclear. To bridge this knowledge gap, we utilised mouse models of 16p11.2 deletion and duplication to explore changes in corpus callosum oligodendrocytes, myelination, axon caliber, and astrocytes. Immunofluorescence staining was employed to measure lineage and mature oligodendrocyte numbers, as well as myelin basic protein and glial fibrillary acidic protein fluorescence intensity. Transmission electron microscopy was utilised to evaluate axonal structural alterations related to myelin, such as myelinated axon percentage, diameter, myelin thickness, and g-ratio. Our findings reveal changes in the number of mature oligodendrocytes, myelination levels, axon diameter, and astrocytes in the corpus callosum of mice with 16p11.2 deletion and duplication. Deletion mice displayed a tendency toward reduced counts of mature oligodendrocytes and myelination levels, while duplication mice exhibited a notable increase. Axon diameter variations included a significant increase in axon diameter and myelin thickness in both deletion and duplication mice, but with irregular structure in duplication mice. Variances in astrocytes between genotypes showed significant early increases in development for both deletion and duplication mice compared to wild-type mice, with this rise sustained in duplication mice but significantly diminished in deletion mice at a later stage. Our research reveals changes in the biological mechanisms impacting white matter. Comparison of reciprocal trends in 16p11.2 deletion and duplication mice with wild-type mice suggests the possibility of gene dosage effects. Identification of these mechanisms offers an initial step in unveiling therapeutic targets for associated neurodevelopmental disorder phenotypes. Full article
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34 pages, 1057 KiB  
Article
Terminological Resources for Biologically Inspired Design and Biomimetics: Evaluation of the Potential for Ontology Reuse
by Dilek Yargan and Ludger Jansen
Biomimetics 2025, 10(1), 39; https://doi.org/10.3390/biomimetics10010039 - 9 Jan 2025
Viewed by 1127
Abstract
Biomimetics aims to learn from living systems to develop innovative technical artefacts. As it transcends disciplinary boundaries and needs to integrate both biological and technological knowledge, a domain ontology for biomimetics would be highly desirable. So far, several terminological resources have been designed [...] Read more.
Biomimetics aims to learn from living systems to develop innovative technical artefacts. As it transcends disciplinary boundaries and needs to integrate both biological and technological knowledge, a domain ontology for biomimetics would be highly desirable. So far, several terminological resources have been designed to support the biomimetic development process. This paper examines nine resources for Biologically Inspired Design and biomimetics, including taxonomies, thesauri, and ontologies. Their benefits and limitations for structuring or organising biomimetic knowledge are evaluated against nine criteria, including availability, clarity, and machine readability. Our analysis shows that existing terminological resources have little to no potential for reuse due to inconsistent structure, ambiguous class labels, lack of standardisation, and lack of availability. Furthermore, no resource adequately represents biomimetic knowledge, as all resources suffer from limitations in content representation, reusability, or infrastructure. In particular, an adequate domain ontology for supporting biomimetic development is lacking; we discuss the desiderata for such an ontology. Full article
(This article belongs to the Special Issue Biomimetic Process and Pedagogy: Second Edition)
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144 pages, 2373 KiB  
Proceeding Paper
Programme and Abstracts ECEM 2024
by Ronan Reilly and Ralph Radach
J. Eye Mov. Res. 2024, 17(6), 1-144; https://doi.org/10.16910/jemr.17.6.1 - 20 Dec 2024
Viewed by 202
Abstract
Conference chairs: Ralph Radach (Programme), General and Biological Psychology, University of Wuppertal; Ronan Reilly (Local organisation), Department of Computer Science, Maynooth University [...] Full article
21 pages, 2428 KiB  
Review
Coral Reef Surveillance with Machine Learning: A Review of Datasets, Techniques, and Challenges
by Abdullahi Chowdhury, Musfera Jahan, Shahriar Kaisar, Mahbub E. Khoda, S M Ataul Karim Rajin and Ranesh Naha
Electronics 2024, 13(24), 5027; https://doi.org/10.3390/electronics13245027 - 20 Dec 2024
Cited by 2 | Viewed by 4505
Abstract
Climate change poses a significant threat to our planet, particularly affecting intricate marine ecosystems like coral reefs. These ecosystems are crucial for biodiversity and serve as indicators of the overall health of our oceans. To better understand and predict these changes, this paper [...] Read more.
Climate change poses a significant threat to our planet, particularly affecting intricate marine ecosystems like coral reefs. These ecosystems are crucial for biodiversity and serve as indicators of the overall health of our oceans. To better understand and predict these changes, this paper discusses a multidisciplinary technical approach incorporating machine learning, artificial intelligence (AI), geographic information systems (GIS), and remote sensing techniques. We focus primarily on the changes that occur in coral reefs over time, taking into account biological components, geographical considerations, and challenges stemming from climate change. We investigate the application of GIS technology in coral reef studies, analyze publicly available datasets from various organisations such as the National Oceanic and Atmospheric Administration (NOAA), the Monterey Bay Aquarium Research Institute, and the Hawaii Undersea Research Laboratory, and present the use of machine and deep learning models in coral reef surveillance. This article examines the application of GIS in coral reef studies across various contexts, identifying key research gaps, particularly the lack of a comprehensive catalogue of publicly available datasets. Additionally, it reviews the existing literature on machine and deep learning techniques for coral reef surveillance, critically evaluating their contributions and limitations. The insights provided in this work aim to guide future research, fostering advancements in coral reef monitoring and conservation. Full article
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