Search Results (68)

This study investigates the biodeterioration of mosaic surfaces in a semi-confined archaeological environment along the Phlegraean coast (Baiae, Italy), focusing on the interaction between salt efflorescence and phototrophic biofilms. A multi-analytical approach was employed, integrating in situ observations with ex situ analyses, including SEM/EDS, FTIR spectroscopy, and metabarcoding (16S and 18S rRNA), to characterize both abiotic and biotic alteration patterns. Results highlight subtle traces of spatial differentiation: samples from the more exposed sector showed a more consistent colonization by halotolerant and halophilic taxa, particularly among Halobacteria and Rubrobacter, along with abundant sodium, chloride, and sulfate signals suggestive of active salt crystallization. Protected areas exhibit a comparable presence of salts with less diverse halophilic communities that vary along a vertical gradient of light exposure. The integration of chemical and biological data supports a model in which salt stress and biofilm development are co-dependent and synergistic in driving surface degradation. These findings emphasize the need for context-specific conservation strategies that account for the combined action of environmental salinity and microbial communities on historical materials. Full article

The widespread use of single-use plastics, particularly polyethylene (PE) and polypropylene (PP), has resulted in severe environmental pollution due to their durability and resistance to degradation. This report reviews current degradable alternatives to conventional polyolefins and strategies for enhancing their breakdown in natural and managed environments. Mechanisms of abiotic and biotic degradation are examined alongside the influence of environmental factors and standardized testing protocols. Commercially available biodegradable polymers—such as polylactic acid (PLA), polyhydroxyalkanoates (PHAs), poly(butylene succinate) (PBS), poly(butylene adipate-co-terephthalate) (PBAT), starch-based plastics, cellulose derivatives, chitosan, and protein-based materials—are evaluated for their sources, degradation behavior, applications, scalability, and limitations. In addition, modification techniques for PE and PP, including copolymerization, pro-degradant additives, blending with biodegradable fillers, surface functionalization, enzyme-assisted degradation, and photocatalytic additives, are critically assessed for their potential to reduce environmental persistence. Key challenges such as performance trade-offs, incomplete degradation, ecotoxicity, cost, scalability, and end-of-life management are discussed within the context of circular economic integration. This report concludes with future research directions aimed at developing cost-effective, high-performance materials that degrade completely under real-world conditions while minimizing ecological impacts. Full article

Abiotic stresses severely impair plant growth and productivity. To counteract stress, plants have evolved intricate strategies, including the induction of stress-responsive proteins. The Arabidopsis thaliana Salt Tolerance-Related Protein (STRP) has recently emerged as a key player in abiotic stress tolerance. STRP is a small, hydrophilic, intrinsically disordered protein that exhibits the potential to adopt distinct conformations depending on the cellular context. STRP is localized in the cytosol and nucleus and is associated with the plasma membrane. Stress induces the subcellular redistribution of STRP, accompanied by a significant increase (up to ten-fold) in its levels due to reduced degradation by the 26S proteasome. Reverse genetics studies have demonstrated that STRP can mitigate the detrimental effects of oxidative stress and participate in modulating stress-related gene expression. Although the exact mechanism of STRP remains unclear, its physicochemical properties suggest a dual role as a molecular shield, interacting with macromolecules without a fixed conformation, and as a binder of specific defense-related client proteins, adopting a defined tertiary structure. This review provides a comprehensive overview of STRP and its emerging role as a multifunctional player in abiotic stress responses, also highlighting its potential for strengthening crop resilience and maintaining agricultural productivity under global climate challenges. Full article

The widespread use of pesticides in modern agriculture has significantly enhanced food production by managing pests and diseases; however, their degradation in soil can lead to unintended consequences for soil fertility and nutrient cycling. This review explores the mechanisms of pesticide degradation, both abiotic and biotic, and the soil factors influencing these processes. It critically examines how degradation products impact soil microbial communities, organic matter decomposition, and key nutrient cycles, including nitrogen, phosphorus, potassium, and micronutrients. This review highlights emerging evidence linking pesticide residues with altered enzymatic activity, disrupted microbial populations, and reduced nutrient bioavailability, potentially compromising soil structure, water retention, and long-term productivity. Additionally, it discusses the broader environmental and agricultural implications, including decreased crop yields, biodiversity loss, and groundwater contamination. Sustainable management strategies such as bioremediation, the use of biochar, eco-friendly pesticides, and integrated pest management (IPM) are evaluated for mitigating these adverse effects. Finally, this review outlines future research directions emphasizing long-term studies, biotechnology innovations, and predictive modeling to support resilient agroecosystems. Understanding the intricate relationship between pesticide degradation and soil health is crucial to ensuring sustainable agriculture and food security. Full article

A temporal monitoring of monumental buildings in calcarenite, exposed outdoors in the considered Mediterranean environment of Southern Italy, was performed using XPS, the surface-specific technique. The methodology adopted to monitor the surfaces interacting with atmospheric agents and biotic/abiotic pollutants involved progressive sampling, extended to about five years, from the walls of a new building, specifically installed in the immediate vicinity of an ancient farmhouse in an advanced state of degradation. Taking the ancient building as the final temporal reference, the aim was to obtain adequate information on the degradation processes of calcarenitic stones, from the initial and evolving phases of the new building towards those representative of the old reference. A large set of XPS data was obtained by resolving, through curve-fitting, the acquired spectra into component peaks, identified as ‘indicator’ chemical groups, which trend as a function of time, supported by PCA, demonstrates a close compositional similarity between the samples of the new building analyzed after 52 months from its installation and those of the ancient building dating back to over a century ago. The results obtained can be considered in the diagnostic strategy of the ongoing PNRR programs dedicated to the care of historical monuments and ecosystem sustainability. Full article

The ecological assessment of rivers under the Water Framework Directive (WFD) requires the use of biological quality elements (BQEs) across defined abiotic types of rivers. However, limited evidence exists on how well biological indices perform across multiple typological classes, particularly under the influence of complex, overlapping stressors. This study evaluated the diagnostic performance of four biological indices (IO—diatoms, MIR—macrophytes, MMI_PL—benthic macroinvertebrates, and EFI + PL—fish) in 16 river sites in southern Poland. These were classified into four abiotic types (5, 6, 12, and 17) and subjected to varying levels of human pressure. Biological, physical and chemical, and hydromorphological data were collected along environmental gradients including conductivity, nutrient enrichment, and habitat modification. Statistical analyses were used to evaluate patterns in community composition and index responsiveness. The IO and MMI_PL indices were the most consistent and sensitive in distinguishing between reference and degraded river conditions. MIR and EFI + PL were more variable, especially in lowland rivers, and showed stronger associations with habitat structure and oxygen levels. Conductivity emerged as a key driver of biological responses across all BQEs, with clear taxonomical shifts observed. The results support the need to consider both typological context and local environmental variation in ecological classification. The findings underscore the need for typology-aware, pressure-specific biomonitoring strategies that combine multiple organism groups and integrate continuous environmental variables. Such approaches can enhance the ecological realism and diagnostic accuracy of river assessment systems, supporting more effective water resource management across diverse hydroecological contexts. Full article

Acute oak decline (AOD) is a multifactorial disease that affects European oaks and represents a growing threat to forests. The disease results from a complex interaction between biotic and abiotic factors: the various environmental stresses, which vary depending on the area in question, and generally increased by climate change, predispose trees to attack by opportunistic pathogens. Among them, we focused on a bacterial consortium associated with AOD, consisting mainly of Brenneria goodwinii, Gibbsiella quercinecans, Rahnella victoriana, and Lonsdalea britannica, which produce degrading enzymes that contribute to phloem necrosis and the development of stem bleeds and bark cracks. However, the role of other pathogens, such as fungi, cannot be ruled out, but instead could be contributory. The potential involvement of xylophagous insects is also being studied, particularly Agrilus biguttatus, which, although, frequently associated with the disease, has not been conclusively demonstrated to act as an active vector of the bacteria. Currently, disease management requires integrated approaches, including monitoring and other forestry strategies to increase forest resilience. Given the phenomenon’s complexity and the risk of the future expansion of that bacterial consortium, further research is necessary to understand the dynamics and to develop effective containment strategies of AOD-associated bacteria. Full article

Plants continuously adapt to their environments by responding to various intrinsic and extrinsic signals. They face numerous biotic and abiotic stresses such as extreme temperatures, drought, or pathogens, requiring complex regulatory mechanisms to control gene activity and adapt their proteome for survival. Epigenetic regulation plays a crucial role in these adaptations, potentially leading to both heritable and non-heritable changes across generations. This process enables plants to adjust their gene expression profiles and acclimate effectively. It is also vital for plant development and productivity, affecting growth, yield, and seed quality, and enabling plants to “remember” environmental stimuli and adapt accordingly. Key epigenetic mechanisms that play significant roles include DNA methylation, histone modification, and ubiquitin ligase complex activity. These processes, which have been extensively studied in the last two decades, have led to a better understanding of the underlying mechanisms and expanded the potential for improving agriculturally and economically important plant traits. DNA methylation is a fundamental process that regulates gene expression by altering chromatin structure. The addition of methyl groups to cytosines by DNA methylases leads to gene suppression, whereas DNA demethylases reverse this effect. Histone modifications, on the other hand, collectively referred to as the “histone code”, influence chromatin structure and gene activity by promoting either gene transcription or gene silencing. These modifications are either recognized, added, or removed by a variety of enzymes that act practically as an environmental memory, having a significant impact on plant development and the responses of plants to environmental stimuli. Finally, ubiquitin ligase complexes, which tag specific histones or regulatory proteins with ubiquitin, are also crucial in plant epigenetic regulation. These complexes are involved in protein degradation and play important roles in regulating various cellular activities. The intricate interplay between DNA methylation, histone modifications, and ubiquitin ligases adds complexity to our understanding of epigenetic regulation. These mechanisms collectively control gene expression, generating a complex and branching network of interdependent regulatory pathways. A deeper understanding of this complex network that helps plants adapt to environmental changes and stressful conditions will provide valuable insights into the regulatory mechanisms involved. This knowledge could pave the way for new biotechnological approaches and plant breeding strategies aimed at enhancing crop resilience, productivity, and sustainable agriculture. Full article

Native plant species used for ecological restoration in urban and degraded areas are typically cultivated by ornamental and forestry nurseries. In the face of climate change, it is crucial to produce plants that can withstand transplant stress while promoting the use of sustainable materials, such as peat-free substrates. Replacing peat with locally sourced organic materials offers a promising strategy to enhance plant resilience to abiotic stress while improving sustainability. This study evaluated the effects of alternative growing media on the growth and post-transplant performance of Viburnum lantana L. under standard nursery conditions. Three substrate mixtures were tested: (i) peat:pumice 70:30 v:v (PP); (ii) coconut coir dust:pumice 70:30 v:v (CP); (iii) coconut coir dust:green compost 55:45 v:v (CGC). After one year in the nursery, half of the plants were sampled in late spring for biometric, eco-physiological, and nutrient analyses, while the remaining plants were transplanted into a degraded area providing only a single irrigation event during the trial. Approximately 100 days after transplant, biometric and eco-physiological parameters were assessed. Plants grown on CGC demonstrated the highest transplant success, while those grown on PP and CP exhibited greater leaf necrosis, with PP plants also showing significant defoliation. These findings highlight CGC as a viable and sustainable alternative to peat-based substrates, particularly for post-transplant survival in degraded areas prone to drought stress. Full article

The increasing global population and intensifying resource limitations present a formidable challenge for sustainable crop production, especially in developing regions. This review explores the pivotal role of microbial ecosystem services in alleviating environmental stresses that impede agricultural productivity. Soil microbiota, particularly plant growth-promoting microbes (PGPMs), are integral to soil health and fertility and plant resilience against both abiotic (drought, salinity, temperature extremes, heavy metals) and biotic (pathogen) stresses. These microorganisms employ a variety of direct and indirect mechanisms, including the modulation of phytohormones, nutrient solubilization, the production of stress-alleviating enzymes, and the synthesis of antimicrobial compounds, to enhance plant growth and mitigate adverse environmental impacts. Advances in microbial biotechnology have expanded the toolkit for harnessing beneficial microbes, enabling the development of microbial inoculants and consortia tailored for specific stress conditions. This review highlights the multifaceted contributions of soil microbes, such as improving nutrient uptake, promoting root development, facilitating pollutant degradation, and supporting carbon sequestration, all of which underpin ecosystem resilience and sustainable agricultural practices. Furthermore, the synergistic interactions between plant roots and rhizospheric microbes are emphasized as key drivers of soil structure enhancement and long-term productivity. By synthesizing current research on the mechanisms of microbe-mediated stress tolerance, this review underscores the potential of microbial interventions to bridge the gap between food security and environmental conservation. The integration of microbial solutions into agroecosystems offers a promising, eco-friendly strategy to revitalize soils, boost crop yields, and ensure agricultural sustainability in the face of mounting environmental challenges. Full article

This study presents a multi-analytical investigation of the wooden components from Khufu’s Second Solar Boat, one of the valuable archaeological discoveries in ancient Egypt. The research integrates advanced imaging and analytical techniques to identify wood species, assess deterioration patterns, and characterize the fungal and bacterial biodeteriogens. The initial visual examination documented the state of preservation at the time of discovery. Subsequently, the identification of the wood species was carried out. The deterioration status was assessed using a variety of tools, including scanning electron microscopy (SEM) and high-resolution synchrotron radiation computed microtomography (SR-μCT) for morphological alterations, X-ray diffraction (XRD) for crystallinity changes and Fourier-transform infrared spectroscopy (FTIR) to assess chemical degradation indexes of wood. Moreover, molecular techniques were used to identify and characterize the presence of biodeterioration agents. Results indicate that ancient craftsmen used cedar wood for the boat construction. The analysed samples exhibited advanced biotic and abiotic degradation, as evidenced by microbiological assessments, XRD measurements of cellulose crystallinity, FTIR indices, SEM micrographs and SR-μCT data. These results provide crucial insights into the long-term degradation processes of archaeological wood in arid environments, enhancing our understanding of ancient Egyptian woodworking practices and informing future conservation strategies for similar artifacts. Full article

Grafting is widely used as an effective strategy to enhance tolerance to biotic and abiotic stresses and improve fruit quality in horticultural crops. However, the molecular mechanisms of transcription and the regulatory functions in response to drought stress of mobile mRNAs remain poorly understood. In this study, we developed a grafting system based on the “one grafted plant—three samples” approach using the cultivated tomato/Solanum pennellii (Heinz 1706/LA 0716) heterografting system. A bioinformatics pipeline was developed based on RNA-seq to identify mobile mRNAs in the heterografting systems. A total of 61 upwardly and 990 downwardly mobile mRNAs were identified. Furthermore, we found that the mobility of mRNAs was not correlated with their abundance. The functional annotation and enrichment analysis indicated that mobile mRNAs were mainly involved in RNA binding, photosynthesis, photosystem, response to heat, and translation processes, and ultimately increased the drought tolerance of grafted plants. In addition, we also analyzed the RNA-binding proteins (RBPs) of downwardly mobile mRNAs and found that RBPs were conserved among species. Further, mobile mRNAs may be degraded during transportation. This study provides a pipeline for detecting mobile mRNAs in plant heterografting systems and offers new insights into future studies on long-distance mRNAs transport and regulatory mechanisms involved in drought stress responses. Full article

The quality and production of viticulture are profoundly shaped by climate and soil, which are vital for enhancing plant growth, maximizing productivity, and facilitating carbon sequestration and phytoremediation. Any degradation in soil quality resulting from production practices—such as salinization and increased acidity—jeopardizes the long-term sustainability of vineyard operations. It is crucial that we prioritize the health of our soil to ensure the future success of our vineyards. This study aims to (1) assess soil fungal diversity under various management practices, (2) compare the relative abundance of sequence reads for different taxa in response to these practices, and (3) analyze shifts in functional guild composition in relation to these management practices. In this investigation, the fungal community composition was analyzed using molecular tools across five locations with distinct land management practices on the same basaltic soil. The findings indicate that vineyard management practices had a substantial impact on fungal diversity, as evidenced by taxonomic alpha diversity metrics, with significant differences observed in comparison to natural pasture and open field conditions. A permutational analysis of variance (PERMANOVA) revealed a highly significant effect of management practices (p < 0.0001) on fungal community structure. The land management practices were found to induce significant (p < 0.05) differences in species diversity between organic sites (organic and conventional) and the natural control site. Furthermore, the composition and functionality of the fungal communities appear to be shaped by the distinct abiotic factors associated with different management strategies that increase the abundance of total soil microorganisms that are affecting the grape yield and its quality. Full article

Lonicera japonica Thunb has significant edible and medicinal value, possessing heat clearing, detoxification, antibacterial, and blood pressure reduction properties. Currently, its quality is constrained by factors such as climate, environment, flowering period, and germplasm degradation. The strategy of using bioreactors and abiotic inducers to produce bioactive metabolites has not yet been implemented. This study reports, for the first time, the induction of an embryogenic callus from L. japonica anthers, the identification of tissue morphological structures, and the effects of light induction on the callus morphology, metabolite accumulation, and antioxidant activity. The results showed that the MS medium, supplemented with 1.0 mg·L⁻¹ 6-BA, 1.5 mg·L⁻¹ NAA, 1.5 mg·L⁻¹ 2,4-D, and 0.2 mg·L⁻¹ KT, induced 89% embryogenic callus formation. Uniform callus lines were obtained using 2.0 mg·L⁻¹ 6-BA, 0.5 mg·L⁻¹ NAA, and 0.2 mg·L⁻¹ KT in each subcultivation. Embryogenic cells were observed to have closely arranged spherical protruding granules on their surface, along with visible nuclei and numerous starch grains. After 15 days of blue light induction, active metabolites and antioxidant activities peaked. This experimental system not only provides support for germplasm innovation but also indicates that abiotic inducers can be utilized as a means to achieve higher yields of metabolic products. Full article

The Populus euphratica desert riparian forest, predominantly distributed along the Tarim River in northwestern China, has experienced significant degradation due to climate change and anthropogenic activities. Despite its ecological importance, systematic assessments of P. euphratica stand structure across the entire Tarim River remain scarce. This study employed terrestrial laser scanning (TLS) to capture high-resolution 3D structural data from 2741 individual trees across 30 plots within six transects, covering the 1300 km mainstream of the Tarim River. ANOVA, PCA, and RDA were applied to examine tree structure variation and environmental influences. Results revealed a progressive decline in key structural parameters from the upper to lower reaches of the river, with the lower reaches showing pronounced degradation. Stand density decreased from 440 to 257 trees per hectare, mean stand height declined from 9.3 m to 5.6 m, mean crown diameter reduced from 4.1 m to 3.8 m, canopy cover dropped from 62% to 42%, and the leaf area index fell from 0.51 to 0.29. Age class distributions varied along the river, highlighting population structures indicative of growth in the upper reaches, stability in the middle reaches, and decline in the lower reaches. Abiotic factors, including groundwater depth, soil salinity, soil moisture, and precipitation, exhibited strong correlations with stand structural parameters (p < 0.05, R² ≥ 0.69). The findings highlight significant spatial variations in tree structure, with healthier growth in the upper reaches and degradation in the lower reaches, enhance our understanding of forest development processes, and emphasize the urgent need for targeted conservation strategies. This comprehensive quantification of P. euphratica stand structure and its environmental drivers offer valuable insights into the dynamics of desert riparian forest ecosystems. The findings contribute to understanding forest development processes and provide a scientific basis for formulating effective conservation strategies to sustain these vital desert ecosystems, as well as for the monitoring of regional environmental changes. Full article