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Keywords = Siberian wildrye

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27 pages, 6313 KiB  
Article
Genome-Wide Exploration and Characterization of the TCP Gene Family’s Expression Patterns in Response to Abiotic Stresses in Siberian Wildrye (Elymus sibiricus L.)
by Tianqi Liu, Jinghan Peng, Zhixiao Dong, Yingjie Liu, Jiqiang Wu, Yanli Xiong, Changbing Zhang, Lijun Yan, Qingqing Yu, Minghong You, Xiao Ma and Xiong Lei
Int. J. Mol. Sci. 2025, 26(5), 1925; https://doi.org/10.3390/ijms26051925 - 23 Feb 2025
Viewed by 892
Abstract
Siberian wildrye (Elymus sibiricus L.), a model Elymus Gramineae plant, has high eco-economic value but limited seed and forage yield. TCP transcription factors are widely regarded as influencing yield and quality and being crucial for growth and development; still, this gene family [...] Read more.
Siberian wildrye (Elymus sibiricus L.), a model Elymus Gramineae plant, has high eco-economic value but limited seed and forage yield. TCP transcription factors are widely regarded as influencing yield and quality and being crucial for growth and development; still, this gene family in Siberian wildrye remains unexplored. Therefore, this study looked at the Siberian wildrye TCP gene family’s reaction to several abiotic stresses, its expression pattern, and its potential evolutionary path. Fifty-four members of the EsTCP gene family were discovered. There are two major subfamilies based on the phylogenetic tree: 27 of Class I (PCF) and 27 of Class II (12 CIN-type and 15 TB1/CYC-type). Gene structure, conserved motif, and sequence alignment analyses further validated this classification. Cis-elements found in the promoter region of EsTCPs are associated with lots of plant hormones and stress-related reactions, covering drought induction and cold tolerance. EsCYC5, EsCYC6, and EsCYC7 may regulate tillering and lateral branch development. EsPCF10’s relative expression was significant under five stresses. Additionally, eight EsTCP genes are potential miR319 targets. These findings highlight the critical significance of the TCP gene family in Siberian wildrye, laying the groundwork for understanding the function of the EsTCP protein in abiotic stress studies and high-yield breeding. Full article
(This article belongs to the Special Issue Genetic Engineering of Plants for Stress Tolerance, Second Edition)
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21 pages, 1867 KiB  
Article
Siberian Wildrye (Elymus sibiricus) Seed Vigor Estimation for the Prediction of Emergence Performance under Diverse Environmental Conditions
by Qibo Tao, Jiayi Xing, Fansheng Meng, Yaqi Zhang, Xinyu Liu, Shuo Guo, Ye Shan, Shangzhi Zhong, Juan Sun and Yanhua Zhao
Agronomy 2024, 14(1), 173; https://doi.org/10.3390/agronomy14010173 - 12 Jan 2024
Cited by 1 | Viewed by 1600
Abstract
Seed vigor is an important aspect of seed quality. It is critical to predict seed vigor and plant seedling emergence under diverse environmental conditions using the laboratory vigor test. Accordingly, laboratory experiments were conducted to determine the standard germination (SG), early individual counts [...] Read more.
Seed vigor is an important aspect of seed quality. It is critical to predict seed vigor and plant seedling emergence under diverse environmental conditions using the laboratory vigor test. Accordingly, laboratory experiments were conducted to determine the standard germination (SG), early individual counts of radicle emergence (RE), mean germination time (MGT), and vigor index (VI) for 16 commercially available seed lots of Siberian wildrye (Elymus sibiricus), an economically and ecological important grass species. The field emergence (FE) for seed lots was explored using a three-year field trial from 2021 to 2023. Meanwhile, pot experiments were carried out to determine the seedling emergence performance under different environmental conditions, including control, drought, and salinity stress. The correlation and regression analysis were done to investigate the links between laboratory vigor test with emergence performance under both field and pot conditions. The results showed that the SG of 16 seed lots were high, similar, and did not differ significantly between seed lots. However, the seedling emergence performance (emergence percentage, seedling dry weight, and simplified vigor index) differed significantly between seed lots under both field and pot conditions. The SG was not significantly correlated with seedling emergence performance under either the field or pot conditions. The counts of RE at selected timing, MGT, and VI showed a significant relationship with seed vigor as reflected by seedling emergence performance under diverse environmental conditions, and we found that RE at 108 h was highly predictive of seed vigor and seedling emergence. The RE at 108 h and VI were positively related to seed vigor, while MGT was negatively related. The seed lots with low vigor had lower RE at 108 h and VI but longer MGT. Overall, both RE at 108 h, MGT, and VI can be used to estimate seed vigor and predict seedling emergence under different environmental conditions, and we highly recommend RE at 108 h as a quick, precise, and convenient vigor test and early warning sign for seed storage of E. sibiricus. These results will enable seed researchers, plant breeders, farmers, and government program directors to target higher seed vigor more effectively for E. sibiricus and similar grass species. Full article
(This article belongs to the Section Grassland and Pasture Science)
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15 pages, 24041 KiB  
Article
Evaluation and Screening of Wild Elymus sibiricus L. Germplasm Resources under Salt Stress
by Shuming Chen, Junjie Feng, Yi Xiong, Yanli Xiong, Yingjie Liu, Junming Zhao, Zhixiao Dong, Xiao Ma and Lijun Yan
Agronomy 2023, 13(11), 2675; https://doi.org/10.3390/agronomy13112675 - 25 Oct 2023
Cited by 4 | Viewed by 1571
Abstract
Soil salinization is a significant obstacle to improving natural grasslands, also affecting farmland productivity. The main distribution area of high salinity soils is primarily located in western China, with a significant presence in the Qinghai–Tibet Plateau (QTP). Siberian wildrye (Elymus sibiricus L.) [...] Read more.
Soil salinization is a significant obstacle to improving natural grasslands, also affecting farmland productivity. The main distribution area of high salinity soils is primarily located in western China, with a significant presence in the Qinghai–Tibet Plateau (QTP). Siberian wildrye (Elymus sibiricus L.) has been widely used in ecological restoration and reseeding in the QTP, due to its strong salt and alkali resistance. To comprehensively evaluate its salt tolerance and to screen salt-tolerant and salt-sensitive germplasm resources, 50 wild E. sibiricus accessions were assessed through the measurement of several physiological parameters. These included the relative water content (RWC); relative electrical conductivity (REC); malondialdehyde content (MDA); proline content (Pro); and Na+/K+ ratio after 14 days of salt stress treatment (200 mmol L−1 NaCl). Through principal component analysis (PCA) based on both material sources and physiological indexing, it was found that the salt damage score (SDS) and RWC had a strong positive correlation (p < 0.05), in opposition to other indices. The positive indicators were REC, Pro, Na+/K+, and MDA, and the negative indicators were RWC and SDS. Ultimately, by combining the results of the conventional membership function analysis and the weighted membership function analysis based on major components, three salt-tolerant accessions—including XJ013-28, NM021-13 and XJ012-17—and four salt-sensitive accessions, including XZ008-20, QH013-8, XZ009-20, and QH005-35, were screened out. These results could be effectively used to assess the effects of salt stress on Siberian wildrye and its related species. This study provides a reference for the discovery and breeding of salt-tolerant cultivars among the Elymus species. Full article
(This article belongs to the Section Grassland and Pasture Science)
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21 pages, 8480 KiB  
Article
Integrating Full-Length Transcriptome and RNA Sequencing of Siberian Wildrye (Elymus sibiricus) to Reveal Molecular Mechanisms in Response to Drought Stress
by Qingqing Yu, Yi Xiong, Xiaoli Su, Yanli Xiong, Zhixiao Dong, Junming Zhao, Xin Shu, Shiqie Bai, Xiong Lei, Lijun Yan and Xiao Ma
Plants 2023, 12(14), 2719; https://doi.org/10.3390/plants12142719 - 21 Jul 2023
Cited by 3 | Viewed by 2173
Abstract
Drought is one of the most significant limiting factors affecting plant growth and development on the Qinghai–Tibet Plateau (QTP). Mining the drought-tolerant genes of the endemic perennial grass of the QTP, Siberian wildrye (Elymus sibiricus), is of great significance to creating [...] Read more.
Drought is one of the most significant limiting factors affecting plant growth and development on the Qinghai–Tibet Plateau (QTP). Mining the drought-tolerant genes of the endemic perennial grass of the QTP, Siberian wildrye (Elymus sibiricus), is of great significance to creating new drought-resistant varieties which can be used in the development of grassland livestock and restoring natural grassland projects in the QTP. To investigate the transcriptomic responsiveness of E. sibiricus to drought stress, PEG-induced short- and long-term drought stress was applied to two Siberian wildrye genotypes (drought-tolerant and drought-sensitive accessions), followed by third- and second-generation transcriptome sequencing analysis. A total of 40,708 isoforms were detected, of which 10,659 differentially expressed genes (DEGs) were common to both genotypes. There were 2107 and 2498 unique DEGs in the drought-tolerant and drought-sensitive genotypes, respectively. Additionally, 2798 and 1850 DEGs were identified in the drought-tolerant genotype only under short- and long-term conditions, respectively. DEGs numbering 1641 and 1330 were identified in the drought-sensitive genotype only under short- and long-term conditions, respectively. Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis revealed that all the DEGs responding to drought stress in E. sibiricus were mainly associated with the mitogen-activated protein kinase (MAKP) signaling pathway, plant hormone signal transduction, the linoleic acid metabolism pathway, the ribosome pathway, and plant circadian rhythms. In addition, Nitrate transporter 1/Peptide transporter family protein 3.1 (NPF3.1) and Auxin/Indole-3-Acetic Acid (Aux/IAA) family protein 31(IAA31) also played an important role in helping E. sibiricus resist drought. This study used transcriptomics to investigate how E. sibiricus responds to drought stress, and may provide genetic resources and references for research into the molecular mechanisms of drought resistance in native perennial grasses and for breeding drought-tolerant varieties. Full article
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17 pages, 3659 KiB  
Article
Comparative Metabolomic Studies of Siberian Wildrye (Elymus sibiricus L.): A New Look at the Mechanism of Plant Drought Resistance
by Qingqing Yu, Yi Xiong, Xiaoli Su, Yanli Xiong, Zhixiao Dong, Junming Zhao, Xin Shu, Shiqie Bai, Xiong Lei, Lijun Yan and Xiao Ma
Int. J. Mol. Sci. 2023, 24(1), 452; https://doi.org/10.3390/ijms24010452 - 27 Dec 2022
Cited by 14 | Viewed by 2520
Abstract
Drought is one of the most important factors affecting plant growth and production due to ongoing global climate change. Elymus sibiricus has been widely applied for ecological restoration and reseeding of degraded grassland in the Qinghai–Tibetan Plateau (QTP) because of its strong adaptability [...] Read more.
Drought is one of the most important factors affecting plant growth and production due to ongoing global climate change. Elymus sibiricus has been widely applied for ecological restoration and reseeding of degraded grassland in the Qinghai–Tibetan Plateau (QTP) because of its strong adaptability to barren, salted, and drought soils. To explore the mechanism of drought resistance in E. sibiricus, drought-tolerant and drought-sensitive genotypes of E. sibiricus were used in metabolomic studies under simulated long-term and short-term drought stress. A total of 1091 metabolites were detected, among which, 27 DMs were considered to be the key metabolites for drought resistance of E. sibiricus in weighted gene co-expression network analysis (WGCNA). Ten metabolites, including 3-amino-2-methylpropanoic acid, coniferin, R-aminobutyrate, and so on, and 12 metabolites, including L-Proline, L-histidine, N-acetylglycine, and so on, showed differential accumulation patterns under short-term and long-term drought stress, respectively, and thus, could be used as biomarkers for drought-tolerant and drought-sensitive E. sibiricus. In addition, different metabolic accumulation patterns and different drought response mechanisms were also found in drought-tolerant and drought-sensitive genotypes of E. sibiricus. Finally, we constructed metabolic pathways and metabolic patterns for the two genotypes. This metabolomic study on the drought stress response of E. sibiricus can provide resources and a reference for the breeding of new drought-tolerant cultivars of E. sibiricus. Full article
(This article belongs to the Special Issue Biotic and Abiotic Stressors in Plant Metabolism)
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16 pages, 3706 KiB  
Article
Contribution of Awns to Seed Yield and Seed Shattering in Siberian Wildrye Grown under Irrigated and Rainfed Environments
by Fabrice Ntakirutimana, Yiyang Wan, Wenhui Liu and Wengang Xie
Agronomy 2021, 11(11), 2219; https://doi.org/10.3390/agronomy11112219 - 2 Nov 2021
Cited by 5 | Viewed by 2097
Abstract
The seed yield of grass species is greatly dependent on inflorescence morphological traits, starting with spikelets per inflorescence and seeds per spikelet, to kernel size, and then to awns. Previous studies have attempted to estimate the contribution of these traits on the harvested [...] Read more.
The seed yield of grass species is greatly dependent on inflorescence morphological traits, starting with spikelets per inflorescence and seeds per spikelet, to kernel size, and then to awns. Previous studies have attempted to estimate the contribution of these traits on the harvested yield of major cereal crops, but little information can be accessed on the influence of awns on seed yield of forage grass species. Siberian wildrye (Elymus sibiricus L.) is a widely important perennial forage grass used to increase forage production in arid and semi-arid grasslands. The grass has long inflorescences with long awns developed at the tip end of the lemmas in the florets. In order to evaluate the effect of awns on Siberian wildrye seed production, awn excision analyses from 10 accessions were performed at flowering stage under irrigated and rainfed regimes. Overall, awn excision reduced thousand-seed weight and seed size under both irrigated and rainfed regimes, which decreased final seed yield per plant. De-awned plants produced significantly more seeds per inflorescence, but spikelets per inflorescence was not influenced by awn excision in either condition. Moreover, histological analyses showed a high degradation of the abscission layer in the awned plants than de-awned ones, and awn excision evidently improved average seed breaking tensile strength (BTS), and thus decreased the degree of seed shattering. In conclusion, the observed significant impact of awn excision on different yield-related traits mirrored the impact of awns on the performance of Siberian wildrye under diverse growing conditions. These results provide useful information for plant breeders, seed producers, and researchers to efficiently improve seed production in Siberian wildrye. Full article
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15 pages, 22119 KiB  
Article
Siberian Wildrye (Elymus sibiricus L.) Abscisic Acid-Insensitive 5 Gene Is Involved in Abscisic Acid-Dependent Salt Response
by Ying De, Fengling Shi, Fengqin Gao, Huaibin Mu and Weihong Yan
Plants 2021, 10(7), 1351; https://doi.org/10.3390/plants10071351 - 2 Jul 2021
Cited by 9 | Viewed by 3227
Abstract
Siberian wildrye (Elymus sibiricus L.) is a salt-tolerant, high-quality forage grass that plays an important role in forage production and ecological restoration. Abscisic acid (ABA)-insensitive 5 (ABI5) is essential for the normal functioning of the ABA signal pathway. However, the [...] Read more.
Siberian wildrye (Elymus sibiricus L.) is a salt-tolerant, high-quality forage grass that plays an important role in forage production and ecological restoration. Abscisic acid (ABA)-insensitive 5 (ABI5) is essential for the normal functioning of the ABA signal pathway. However, the role of ABI5 from Siberian wildrye under salt stress remains unclear. Here, we evaluated the role of Elymus sibiricus L. abscisic acid-insensitive 5 (EsABI5) in the ABA-dependent regulation of the response of Siberian wildrye to salt stress. The open reading frame length of EsABI5 isolated from Siberian wildrye was 1170 bp, and it encoded a 389 amino acid protein, which was localized to the nucleus, with obvious coiled coil areas. EsABI5 had high homology, with ABI5 proteins from Hordeum vulgare, Triticum monococcum, Triticum aestivum, and Aegilops tauschii. The conserved domains of EsABI5 belonged to the basic leucine zipper domain superfamily. EsABI5 had 10 functional interaction proteins with credibility greater than 0.7. EsABI5 expression was upregulated in roots and leaves under NaCl stress and was upregulated in leaves and downregulated in roots under ABA treatment. Notably, tobacco plants overexpressing the EsABI5 were more sensitive to salt stress, as confirmed by the determining of related physiological indicators. EsABI5 expression affected the ABA and mitogen-activated protein kinase pathways. Therefore, EsABI5 is involved in antisalt responses in these pathways and plays a negative regulatory role during salt stress. Full article
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20 pages, 2343 KiB  
Article
Comparative Physiological and Proteomic Analysis Reveals Different Involvement of Proteins during Artificial Aging of Siberian Wildrye Seeds
by Xiong Lei, Wenhui Liu, Junming Zhao, Minghong You, Chaohui Xiong, Yi Xiong, Yanli Xiong, Qingqing Yu, Shiqie Bai and Xiao Ma
Plants 2020, 9(10), 1370; https://doi.org/10.3390/plants9101370 - 15 Oct 2020
Cited by 17 | Viewed by 2999
Abstract
Seed aging has an important effect on the germplasm preservation and industrialized production of Siberian wildrye (Elymus sibiricus) in the Qinghai-Tibet Plateau. However, so far its underlying molecular mechanisms still largely remain unknown. To shed light on this topic, one-year stored [...] Read more.
Seed aging has an important effect on the germplasm preservation and industrialized production of Siberian wildrye (Elymus sibiricus) in the Qinghai-Tibet Plateau. However, so far its underlying molecular mechanisms still largely remain unknown. To shed light on this topic, one-year stored seeds of E. sibiricus were exposed to artificial aging treatments (AAT), followed by seed vigor characteristics and physiological status monitoring. Then global proteomics analysis was undertaken by the tandem mass tags (TMT) technique, and the proteins were quantified with liquid chromatography-tandem mass spectrometry on three aging time points (0 h, 36 h and 72 h). Finally, we verified the expression of related proteins by parallel reaction monitoring (PRM). Our results demonstrated that the seed vigor decreased remarkably in response to artificial aging, but the relative ion-leakage and malondialdehyde content, superoxide anion and hydrogen peroxide showed the opposite situation. Proteomic results showed that a total of 4169 proteins were identified and quantified. Gene Ontology (GO) analysis and Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis indicated that a series of key pathways including carbohydrate metabolism, lipid metabolism, and antioxidant activity were severely damaged by aging treatments. Numerous key proteins such as glyceraldehyde triphosphate glyceraldehyde dehydrogenase, succinate dehydrogenase, lipoxygenase, peroxidase, glutathione-s-transferase and late embryogenesis abundant proteins were significantly down-regulated. However, the up-regulation of the heat shock protein family has made a positive contribution to oxidative stress resistance in seeds. This study provides a useful catalog of the E. sibiricus proteomes with insights into the future genetic improvement of seed storability. Full article
(This article belongs to the Special Issue Responses of Plants to Environmental Stresses)
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18 pages, 968 KiB  
Article
Potential Effects of Awn Length Variation on Seed Yield and Components, Seed Dispersal and Germination Performance in Siberian Wildrye (Elymus sibiricus L.)
by Fabrice Ntakirutimana, Bowen Xiao, Wengang Xie, Junchao Zhang, Zongyu Zhang, Na Wang and Jiajun Yan
Plants 2019, 8(12), 561; https://doi.org/10.3390/plants8120561 - 1 Dec 2019
Cited by 23 | Viewed by 3577
Abstract
Awns, needle-like structures formed on the distal of the lemmas in the florets, are of interest because of their essential roles in seed dispersal, germination and photosynthesis. Previous research has reported the potential benefits of awns in major cereal grasses, yet reports on [...] Read more.
Awns, needle-like structures formed on the distal of the lemmas in the florets, are of interest because of their essential roles in seed dispersal, germination and photosynthesis. Previous research has reported the potential benefits of awns in major cereal grasses, yet reports on the agronomic and economic implications of awn length variation in forage grasses remain scarce. This study investigated the variation of awn length among 20 Siberian wildrye populations and the effect of awn length on seed yield and yield components. This work then studied the impact of awn length on seed dispersal and germination. The analyses indicated a high level of awn length variation among populations. Awn length showed a significant influence on harvested seed yield per plant (p < 0.05) mostly driven by interactions between awn length and the majority of seed yield components. Principal component analysis clearly revealed that the final impact of awn length on seed yield depends on the balance of its positive and negative effects on traits determining seed yield. Furthermore, awn length tended to increase seed dispersal distance, although little diversity in the nature of this progression was observed in some populations. Awn length exhibited a significant relationship (p < 0.05) with germination percentage. It also tended to shorten germination duration, although this interaction was not statistically significant. Collectively, these results provide vital information for breeding and agronomic programs aiming to maintain yield in grasses. This is the first report to demonstrate in Siberian wildrye the agronomic impacts of awn length variation. Full article
(This article belongs to the Section Plant Ecology)
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