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Keywords = Phytophthora xcambivora

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31 pages, 15699 KiB  
Article
Preliminary Machine Learning-Based Classification of Ink Disease in Chestnut Orchards Using High-Resolution Multispectral Imagery from Unmanned Aerial Vehicles: A Comparison of Vegetation Indices and Classifiers
by Lorenzo Arcidiaco, Roberto Danti, Manuela Corongiu, Giovanni Emiliani, Arcangela Frascella, Antonietta Mello, Laura Bonora, Sara Barberini, David Pellegrini, Nicola Sabatini and Gianni Della Rocca
Forests 2025, 16(5), 754; https://doi.org/10.3390/f16050754 - 28 Apr 2025
Cited by 1 | Viewed by 480
Abstract
Ink disease, primarily caused by the pathogen Phytophthora xcambivora, significantly threatens the health and productivity of sweet chestnut (Castanea sativa Mill.) orchards, highlighting the need for accurate detection methods. This study investigates the efficacy of machine learning (ML) classifiers combined with high-resolution [...] Read more.
Ink disease, primarily caused by the pathogen Phytophthora xcambivora, significantly threatens the health and productivity of sweet chestnut (Castanea sativa Mill.) orchards, highlighting the need for accurate detection methods. This study investigates the efficacy of machine learning (ML) classifiers combined with high-resolution multispectral imagery acquired via unmanned aerial vehicles (UAVs) to assess chestnut tree health at a site in Tuscany, Italy. Three machine learning algorithms—support vector machines (SVMs), Gaussian Naive Bayes (GNB), and logistic regression (Log)—were evaluated against eight vegetation indices (VIs), including NDVI, GnDVI, and RdNDVI, to classify chestnut tree crowns as either symptomatic or asymptomatic. High-resolution multispectral images were processed to derive vegetation indices that effectively captured subtle spectral variations indicative of disease presence. Ground-truthing involved visual tree health assessments performed by expert forest pathologists, subsequently validated through leaf area index (LAI) measurements. Correlation analysis confirmed significant associations between LAI and most VIs, supporting LAI as a robust physiological metric for validating visual health assessments. GnDVI and RdNDVI combined with SVM and GNB classifiers achieved the highest classification accuracy (95.2%), demonstrating their superior sensitivity in discriminating symptomatic from asymptomatic trees. Indices such as MCARI and SAVI showed limited discriminative power, underscoring the importance of selecting appropriate VIs that are tailored to specific disease symptoms. This study highlights the potential of integrating UAV-derived multispectral imagery and machine learning techniques, validated by LAI, as an effective approach for the detection of ink disease, enabling precision forestry practices and informed orchard management strategies. Full article
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21 pages, 2752 KiB  
Article
Biocontrol of Phytophthora xcambivora on Castanea sativa: Selection of Local Trichoderma spp. Isolates for the Management of Ink Disease
by Arcangela Frascella, Sabrina Sarrocco, Antonietta Mello, Francesco Venice, Cristina Salvatici, Roberto Danti, Giovanni Emiliani, Sara Barberini and Gianni Della Rocca
Forests 2022, 13(7), 1065; https://doi.org/10.3390/f13071065 - 6 Jul 2022
Cited by 13 | Viewed by 5864
Abstract
Ink disease is a devastating disease of chestnut (Castanea sativa) worldwide, caused by Phytophthora species. The only management measures of this disease are chemical and agronomic interventions. This work focuses on the evaluation of the in vitro antagonistic capacity of 20 [...] Read more.
Ink disease is a devastating disease of chestnut (Castanea sativa) worldwide, caused by Phytophthora species. The only management measures of this disease are chemical and agronomic interventions. This work focuses on the evaluation of the in vitro antagonistic capacity of 20 isolates of Trichoderma spp. selected in a diseased chestnut orchard in Tuscan Apennines (San Godenzo, Italy) for the biocontrol of Phytophthora xcambivora. Each Trichoderma isolate was tested to investigate pathogen inhibition capability by antagonism in dual cultures and antibiosis by secondary metabolites production (diffusible and Volatile Organic Compounds). The six most performing isolates of Trichoderma spp. were further assessed for their aptitude to synthesize chitinase, glucanase and cellulase, and to act as mycoparasite. All six selected isolates displayed the capability to control the pathogen in vitro by synergistically coupling antibiosis and mycoparasitism at different levels regardless of the species they belong to, but rather, in relation to specific features of the single genotypes. In particular, T. hamatum SG18 and T. koningiopsis SG6 displayed the most promising results in pathogen inhibition, thus further investigations are needed to confirm their in vivo efficacy. Full article
(This article belongs to the Special Issue Biological Control in Forests Protection)
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13 pages, 1192 KiB  
Article
Co-Infections by Fusarium circinatum and Phytophthora spp. on Pinus radiata: Complex Phenotypic and Molecular Interactions
by Francesco Aloi, Cristina Zamora-Ballesteros, Jorge Martín-García, Julio J. Diez and Santa Olga Cacciola
Plants 2021, 10(10), 1976; https://doi.org/10.3390/plants10101976 - 22 Sep 2021
Cited by 16 | Viewed by 3455
Abstract
This study investigated the complex phenotypic and genetic response of Monterey pine (Pinus radiata) seedlings to co-infections by F. circinatum, the causal agent of pine pitch canker disease, and the oomycetes Phytophthora xcambivora and P. parvispora. Monterey pine seedlings [...] Read more.
This study investigated the complex phenotypic and genetic response of Monterey pine (Pinus radiata) seedlings to co-infections by F. circinatum, the causal agent of pine pitch canker disease, and the oomycetes Phytophthora xcambivora and P. parvispora. Monterey pine seedlings were wound-inoculated with each single pathogen and with the combinations F. circinatum/P. xcambivora and F. circinatum/P. parvispora. Initially, seedlings inoculated only with F. circinatum showed less severe symptoms than seedlings co-inoculated or inoculated only with P. xcambivora or P. parvispora. However, 30 days post-inoculation (dpi), all inoculated seedlings, including those inoculated only with F. circinatum, showed severe symptoms with no significant differences among treatments. The transcriptomic profiles of three genes encoding pathogenesis-related proteins, i.e., chitinase (PR3), thaumatin-like protein (PR5), phenylalanine ammonia-lyase (PAL), and the pyruvate decarboxylase (PDC)-encoding gene were analyzed at various time intervals after inoculation. In seedlings inoculated with single pathogens, F. circinatum stimulated the up-regulation of all genes, while between the two oomycetes, only P. xcambivora induced significant up-regulations. In seedlings co-inoculated with F. circinatum and P.xcambivora or P. parvispora none of the genes showed a significant over-expression 4 dpi. In contrast, at 11 dpi, significant up-regulation was observed for PR5 in the combination F. circinatum/P.xcambivora and PDC in the combination F. circinatum/P. parvispora, thus suggesting a possible synergism of multiple infections in triggering this plant defense mechanism. Full article
(This article belongs to the Special Issue Molecular Plant-Fungal and Plant-Oomycete Interactions)
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