Search Results (89)

Tubastraea coccinea and T. tagusensis, commonly known as sun corals, are two species of stony corals (Scleractinia, Dendrophylliidae) native to the Indo-Pacific region (T. coccinea) and the Galapagos Islands (T. tagusensis), respectively. They are considered highly invasive species, particularly in the Western Atlantic Ocean, due to high adaptability to various ecological conditions and notable resilience. Given their demonstrated invasiveness, it is important to delve into their physiology and the molecular bases supporting their resilience. However, to date, only a few molecular tools are available for the study of these organisms. The primary objective of the present study was the development of an efficient RNA extraction protocol for Tubastraea coccinea and T.a tagusensis samples collected off Ilha Grande Bay, Rio de Janeiro (Brazil). The quantity of isolated RNA was evaluated using NanoDrop, while its purity and quality were determined by evaluating the A260/A280 and A260/230 ratios. Subsequently, based on genes known for T. coccinea, two housekeeping genes and seven stress response-related genes were isolated and characterized, for the first time for both species, using a molecular approach. An interactomic analysis was also conducted, which revealed functional interactions among these genes. This study represents the first report on gene networks in Tubastraea spp., opening new perspectives for understanding the chemical ecology and the cellular mechanisms underlying the invasiveness of these species. The results obtained will be useful for ecological conservation purposes, contributing to the formulation of strategies to limit their further expansion. Full article

Giant clams are ecologically important coral reef animals, with many species facing imminent local extinction. While many regions have undertaken recent assessments of their biodiversity assets, persistent gaps remain even in otherwise well-surveyed areas. This study sought to understand the geographic distribution of smaller-bodied and morphologically similar giant clams, specifically Tridacna maxima and T. noae, in the eastern Indian Ocean. Due to the difficulties in reliably identifying these species using morphological characters, we confirmed species identity and investigated intraspecific variation using sequence data from the mitochondrial cytochrome C oxidase subunit I gene (COI). Seventy whole animal vouchers were newly sampled from a 1500 km span of remote northwestern Australian coastline over a decade, as part of an ongoing coral reef survey expedition of the Western Australian Museum and partners. Tridacna maxima had a limited distribution and was only genotyped from offshore oceanic reefs in the Rowley Shoals and Cocos Keeling Islands. In contrast, T. noae was well established beyond Ningaloo Reef, and was abundant at inshore sites throughout the Pilbara and Kimberley, and even offshore to Ashmore Reef. Phylogeographically, T. maxima did not group with conspecifics from the Western Pacific Ocean, including the east coast of Australia, but instead clustered with individuals from Malaysia, China, Taiwan, and Indonesia; T. noae exhibited a similar pattern. The affinity of Western Australian individuals with representatives from the Indo-Malay region and not eastern Australia will be an important consideration for these commercially important species. Novel haplotypes in both tested species occur in Western Australia. Continued sampling of eastern and central Indian Ocean giant clams, especially to continue to document the range of T. noae, is encouraged to understand connectivity in this basin. Together, these findings contribute to an improved baseline for conservation initiatives of these iconic coral reef animals in Western Australia. Full article

The Northwestern Pacific Subtropical High (NPSH), usually enhanced by the basin-scale warming of the Indian Ocean (IOBW), plays a major role in controlling the summertime East Asian climate. To assess factors contributing to the decadal modulation of the NPSH and IOBW relationship in recent years, we conducted sensitivity experiments using an atmospheric general circulation model. We particularly focused on decadal-scale differences between the periods of 1982–2001 and 2002–2021, with the contribution of the climatological sea surface temperature (SST) as the background, in combination with the tropical Pacific SST anomaly in relation to the rapid or slow decay of the El Niño Southern Oscillation (ENSO). The results indicate that the IOBW-related SST anomalies in the Indian and tropical Pacific Oceans—which, overall, represent the well-known characteristics of the so-called Indo-western Pacific Ocean Capacitor effects—cooperatively enhanced the NPSH in the earlier period (1982–2001). On the other hand, the suppressed and westward-shifted SST anomalies in the tropical Pacific Ocean and the resultant changes in the diabatic heating of cumulus convection suppressed the NPSH enhancement in recent years (2002–2021). These results indicate that the modulation in the NPSH responses linked to the IOBW is primarily due to the so-called ENSO diversity rather than climatology. Full article

Understanding population genetic connectivity is crucial for the sustainability and persistence of marine biodiversity. As a fundamental reef-building macroalga of the coastal ecosystem, Halimeda macroloba Decaisne is one of the dominant intertidal seaweeds in the Indo-Pacific region. However, its genetic structure and population connectivity have been poorly recognized. Here, we explored the population genetic structure and genetic connectivity of H. macroloba using chloroplast tufA, rps3-rpl14, and rbcL. Our results indicated low genetic diversity and shallow population genetic structure at the intraspecific level, uncovering five genetic groups with six subdivided lineages in tufA and two genetic clusters in rps3-rpl14. We detected demographic expansion in the last glacial period of the Pleistocene and significantly asymmetric gene flow among different geographical units. We suggest that the southwestward ocean currents under the influence of northeast monsoon in the Indo-Pacific region are the main factor in shaping the present genetic structure, and the asexual reproduction of H. macroloba also plays an important role of the low genetic diversity pattern; in addition, the divergence between genetic clusters might be related to the historical isolation led by the paleoclimate oscillation in the Pleistocene. The Xisha Islands in the northern South China Sea might serve as a potential refugium of H. macroloba, which needs extra attention to conservation management. Given the limitation of sample size, we need to conduct more field work and carry out further research at a larger scale in the future. Our study provided new insights into the theory of population connectivity in the Indo-Pacific region and provided scientific basis for tropical costal seaweed conservation. Full article

Sea surface temperature (SST) is considered a strong indicator of climate change, being an essential parameter for long-range weather and climate forecasting. Another important indicator of climate change is sea level (SL), which has a longer history of systematic instrumental observations. This paper aims to examine the relationships between low-latitude variations in ocean characteristics (SST and SL) and surface air temperature (SAT) anomalies in the Arctic and mid-latitudes, and discuss the possibility of using SST and SL as predictors to forecast seasonal SAT anomalies. Archives of meteorological observations, atmospheric and oceanic reanalyses, and long-term series of tide gauge data on SL were used in this study. An analysis of relationships between seasonal SAT in different mid-to-high latitude regions and SST made it possible to identify areas in the ocean that have the greatest influence on SAT patterns. The most commonly identified area is located in the tropical North Atlantic. Another area was found in the Indo-Pacific warm pool. The predictive potential of the relationships identified between ocean characteristics (SST and SL) and SAT will be used to build deep learning models aimed at predicting climate variability in mid-to-high latitudes. Full article

Moisture transports play a key role in maintaining the hydrometeorological cycle and forming its climate variability over the Tibetan Plateau (TP), also known as the “Asian water tower”. This study focuses on understanding the interannual variability mode characteristics of moisture transport in the TP in boreal summer, using satellite-based analysis and reanalysis data from 1983 to 2022 with a combined empirical orthogonal function (EOF) analysis. We identified the first two primary interannual modes of TP summer water vapor fluxes, which are primarily characterized by zonal and meridional dipole patterns, respectively. The zonal pattern of the TP water vapor flux dominates the TP and East Asian summer rainfall variability, while the meridional pattern of the TP water vapor flux tends to be a result of the South Asian summer rainfall and its circulation anomalies. The tropical Indo-Pacific sea surface temperature (SST) variations, such as El Niño and Indian Ocean SST modes, have significantly delayed relationships with the interannual variability modes of the summer water vapor fluxes over the TP, indicating a significant modulation effect of the low-latitude oceanic variability on the interannual variations in TP summer moisture transport. These results deepen our understanding of the relationship between TP moisture transport and summer monsoonal rainfall variability, as well as the influence of the tropical oceans. Full article

Sthenoteuthis oualaniensis is one of the most commercially important marine cephalopod species distributed throughout tropical and subtropical waters of the Indo-Pacific Seas. The Indian Ocean is a main fishing ground for S. oualaniensis with a high population density. To explore the distribution of S. oualaniensis in the east equatorial Indian Ocean, four surveys were carried out using light-lift-net fishing vessels. Meanwhile, marine environmental data were also collected, including the sea surface temperature, sea temperature at 100 m depth, mixed layer depth, sea surface chlorophyll-a concentration, sea surface height, and eddy kinetic energy. Generalized Additive Models were used to analyze the relationship between the catch per unit effort (CPUE) for S. oualaniensis and environmental factors. The results showed that the average CPUE of S. oualaniensis was 14.55 kg/h in the four surveys, which was considerably lower than in the South China Sea and Northwest Indian Ocean. In terms of seasonal distribution, the high-CPUE stations were closer to the continental shelf in spring, while they shifted towards the deeper and offshore water in autumn, demonstrating a seasonal migration trend. Pearson correlation analysis showed that CPUE reflected a significant negative correlation with both sea temperature at 100 m depth and eddy kinetic energy (p < 0.001). The Generalized Additive Models revealed that sea surface height was the most significant factor affecting CPUE with a variance explanation of 30.1%. Furthermore, the optimal CPUE prediction model was established by stepwise regression, which contains two factors, sea surface height and eddy kinetic energy, with a variance explanation of 34.9%. This study provides insights into the environmental factors influencing the distribution of S. oualaniensis, which is essential for the sustainable utilization and management of this species. Full article

As important components of the equatorial current system in the Indian Ocean, Wyrtki jets (WJs) play a significant role in distributing heat and matter in the East and West Indian Oceans. By dividing the El Niño-Southern Oscillation (ENSO) and Indian Ocean Dipole (IOD) events into several phases, we find that the spring branch exhibits positive (negative) anomalies during the El Niño (La Niña) decaying phase, while the fall branch exhibits negative (positive) anomalies during the El Niño (La Niña) developing phase. The spring and fall branches are characterized by negative (positive) anomalies under the influence of positive (negative) dipole events, and these anomalies are particularly pronounced during fall. This study systematically analyzes the characteristics of WJs under the interactions between the Indo-Pacific ocean and the atmosphere, based on the phase-locking characteristics of ENSO, and reveals the regulatory mechanisms underlying their different response patterns. Full article

Background: The Merulinidae family belonging to the order Scleractinia is mainly distributed in the Indo-Pacific and Caribbean regions and often constitute the most dominant species of coral reefs. Mitochondrial genome is a key tool for studying the phylogeny and adaptation. Only a few studies have conducted the characteristics analyses of mitochondrial genome in the Merulinidae family. Methods: Therefore, we used high-throughput sequencing technology to describe the mitochondrial genome of Platygyra daedalea, a member of this family. Bioinformatics was used to analyze the composition characteristics of the mitochondrial genome of 10 Merulinidae species. Results: The mitochondrial genome of P. daedalea had a total length of 16,462 bp and a GC content of 33.0%. Thirteen unique protein-coding genes (PCGs), two transfer RNA (tRNA) genes, and two ribosomal RNA (rRNA) genes were annotated. Each species of Merulinidae had 13 unique PCGs in the mitochondrial genome. In contrast, the number of tRNAs and rRNAs significantly varied in Merulinidae species. Collinearity and gene rearrangement analyses indicated that the mitochondrial evolution of species in the Merulinidae family was relatively conserved. Divergence time analysis indicated that Merulinidae originated in the Oligocene, whereas the Platygyra genus originated in the Miocene. The formation and intraspecific divergence of coral species were consistent with geological changes in the ocean. Conclusions: The results of this study help better understand the characteristics of the mitochondrial genome in the Merulinidae family and provide insights into the utility of mitochondrial genes as molecular markers of phylogeny. Full article

The marine dinoflagellate genera Coolia Meunier and Ostreopsis Schmidt have been reported in the Western Indian Ocean and include potentially harmful species. However, no comprehensive observations have been reported in Mauritian waters. The primary aim of this study was to isolate, identify and characterize potentially toxic epiphytic Coolia and Ostreopsis species from the coastal waters of Mauritius. Morphological characteristics were examined using light/fluorescence microscopy and scanning electron microscopy. The morphologies of the Coolia and Ostreopsis strains were similar to those of Coolia canariensis and Ostreopsis ovata. The phylogenetic analyses (large subunit ribosomal [LSU] rDNA D1/D2) revealed that the Mauritian strains of Coolia canariensis and Ostreopsis ovata clustered within the clades of these species complexes with other isolates from different areas. This represents the first record of Coolia canariensis in Mauritius, ascribed to C. canariensis phylogroups I and V, with the latter representing a new lineage of this species complex. The findings broaden the current body of knowledge of Coolia canariensis lineages, while the additional information of Ostreopsis ovata further supports the presence of an Indo-Pacific lineage. Full article

The larger benthic foraminifera is a group of marine protists harbouring symbiotic algae, that are geographically confined to shallow tropical and subtropical waters, often associated with coral reefs. The resulting controls on availability of habitat and rates of dispersion make these foraminifers, particularly the genus Amphistegina, useful proxies in the study of invasive marine biota, transported through hull fouling and ballast water contamination in modern commercial shipping. However, there is limited information on the importance of these dispersal mechanisms for foraminifers in the Pre-Industrial Era (pre-1850) for the Atlantic and Caribbean region. This paper examines possible constraints and vectors controlling the invasion of warm-water taxa from the Indo-Pacific region to the Atlantic and Caribbean region. Heterostegina depressa, first described from St. Helena, a remote island in the South Atlantic, provides a test case. The paper postulates that invasions through natural range expansion or ocean currents were unlikely along the possible available routes and hypothesises that anthropogenic vectors, particularly sailing ships, were the most likely means of transport. It concludes that the invasion of the Atlantic by H. depressa was accomplished within the Little Ice Age (1350–1850 C.E.), during the period between the start of Portuguese marine trade with east Africa in 1497 and the first description of H. depressa in 1826. This hypothesis is likely applicable to other foraminifers and other biota currently resident in the Atlantic and Caribbean region. The model presented provides well-defined parameters that can be tested using methods such as isotopic dating of foraminiferal assemblages in cores and genetic indices of similarity of geographic populations. Full article

Some predatory fishes may exhibit opportunistic feeding behaviour by exploiting potential prey that is distracted, displaced, or exposed by the activities of a third party that acts as a ‘nuclear’ species. Other fishes mostly perform the role of ‘nuclear’ species, but benthic invertebrates, such as octopuses, have also been reported. Crabs are rarely observed in this role, with only a few records from the tropical Atlantic Ocean. Here, we report the temporary association between two specimens of the flowery flounder, Bothus mancus (family Bothidae), and a box crab, Calappa hepatica (family Calappidae), from the Philippines, representing the first record of a crab–fish feeding association in the Indo-Pacific region. Full article

Drought poses a serious threat to Sudan, causing water shortages, crop failures, hunger, and conflict. The relationships between Indo-Pacific teleconnections and drought events in Sudan are examined based on the Standardized Precipitation Index (SPI), anomalies, Empirical Orthogonal Function (EOF), correlation, composite analysis, sequential Mann–Kendall test, and MK-trend test during the period of 1993–2022. The results of the SPI-1 values indicate that the extreme drought in Sudan in 2004 was an exceptional case that affected the entire region, with an SPI-1 value of −2 indicating extremely dry conditions. In addition, Sudan experienced moderate to severe drought conditions for several years (1993, 2002, 2008, 2009 and 2015). The Empirical Orthogonal Function showed that the first EOF mode (42.2%) was the dominant variability mode and had positive loading over most of the country, indicating consistent rainfall variation in the central, eastern, and western regions. Correlation analysis showed a strong significant relationship between June–September rainfall and Indian Ocean sea surface temperature (SST) (r ≤ 0.5). Furthermore, a weak positive influence of the Indian Ocean Dipole (IOD) on JJAS precipitation was observed (r ≤ 0.14). Various time lags in the range of ±12 months were examined, with the highest correlation (0.6) found at 9 month among the time lags of ±12 months. This study contributes to a better understanding of drought dynamics and provides essential information for effective drought management in Sudan. Further research is needed to explore the specific mechanisms driving these interactions and to develop tailored strategies to mitigate the impacts of drought events in the future. Full article

The evolutionary history of emperors, particularly in the Atlantic and Indo-West Pacific Oceans, remains largely unmapped. This study explores the maternal lineage evolution of Lethrinids by examining the complete mitogenome of Lethrinus atlanticus, which is endemic to the Eastern Atlantic Ocean. Utilizing advanced next-generation sequencing, we found that the mitogenome spans 16,789 base pairs and encompasses 37 genes, including 13 protein-coding genes (PCGs), two ribosomal RNAs, 22 transfer RNAs, and an AT-rich control region (CR). Our analysis indicates a preference for AT base pairs in the L. atlanticus mitogenome (53.10%). Most PCGs begin with the ATG codon, except for COI, which starts with GTG. Relative synonymous codon usage reveals high frequencies for alanine, leucine, proline, serine, and threonine. The ratio of nonsynonymous to synonymous substitutions suggests strong negative selection across all PCGs in Lethrinus species. Most transfer RNAs exhibit typical cloverleaf structures, with the exception of tRNA-serine (GCT), which lacks a dihydrouracil stem. Comparative analysis of conserved sequence blocks across the CRs of three Lethrinus species shows notable differences in length and nucleotide composition. Phylogenetic analysis using concatenated PCGs clearly distinguishes all Lethrinus species, including L. atlanticus, and sheds light on the evolutionary relationships among Spariformes species. The estimated divergence time of approximately 20.67 million years between L. atlanticus and its Indo-West Pacific relatives provides insights into their historical separation and colonization during the late Oligocene. The distribution of Lethrinids may be influenced by ocean currents and ecological factors, potentially leading to their speciation across the Eastern Atlantic and Indo-West Pacific. This study enhances our understanding of the genetic diversity and phylogenetic relationships within Lethrinus species. Further exploration of other emperor fish mitogenomes and comprehensive genomic data could provide vital insights into their genetic makeup, evolutionary history, and environmental adaptability in marine ecosystems globally. Full article

The Indonesian Throughflow (ITF) is significantly modulated by Indo-Pacific climate forcing, especially the El Niño–Southern Oscillation (ENSO) and the Indian Ocean Dipole (IOD). However, when ENSO and IOD occur concurrently, they tend to play different roles in the ITF volume transport. By employing an improved Constructed Circulation Analogue (CCA) method, the relative contributions of these climate events to the ITF inflow and outflow transport in the upper and lower layers were quantified. The results indicate that during co-occurring El Niño and positive IOD events, ENSO is the dominant influence, with ratio values of 5.5:1 (3.5:1) in the upper layer and 1.7:1 (1.6:1) in the lower layer of the inflow (outflow). Conversely, during co-occurring La Niña and negative IOD events, the IOD predominates, with ratio values of 1:6 (1:6.5) in the upper layer and 1:4 (1:3) in the lower layer of the inflow (outflow). The mechanisms underlying these variations in the upper and lower layers can be explained by the differences in sea level anomaly (SLA) and wave propagation, respectively. This study provides a new insight into distinct roles of climate forcing on the ITF volume transport during the simultaneous occurrence of multiple climate modes. Full article