Search Results (93)

Captive reptiles bred for economic and medicinal purposes are often susceptible to intestinal parasites that undermine their health and overall farm productivity. In many regions, their economic value largely derives from medicinal use; accordingly, they are described as reptiles with medicinally driven economic value. In this study, we applied high-throughput sequencing to characterize gut eukaryotic communities and assess parasite prevalence in tokay geckos (Gekko gecko) and Chinese blue-tailed skinks (Plestiodon chinensis). Across both host species, six pathogenic genera were identified: Cryptosporidium (P. chinensis: 57.1%, 12/21; G. gecko: 0%), Eimeria (P. chinensis: 14.3%, 3/21; G. gecko: 0%), Oswaldofilaria (P. chinensis: 0%, G. gecko: 4.8%, 1/21), Strongyloides (P. chinensis: 14.3%, 3/21; G. gecko: 19.1%, 4/21), Spironucleus (P. chinensis: 14.3%, 3/21; G. gecko: 9.5%, 2/21), Spauligodon (P. chinensis: 0%, G. gecko: 14.3%, 3/21). Among these, Cryptosporidium exhibited a striking host-specific pattern, occurring exclusively in Chinese blue-tailed skinks (Fisher’s exact test, p = 5.32 × 10⁻⁵). Principal component analysis (PCA) demonstrated clear host-associated segregation along PC1, which accounted for 58.2% of total variance. Furthermore, co-occurrence network analysis revealed significant positive associations (all p < 0.01) between parasites and other eukaryotes, particularly fungi and protozoa. Collectively, these findings underscore the value of high-throughput sequencing for parasite surveillance in reptile farming and point to the importance of integrated diagnostic approaches and enhanced biosecurity measures for maintaining animal health. Full article

Coccidiosis represents a major constraint to sheep productivity worldwide, with increasing concerns regarding anticoccidial resistance and growing interest in reducing dependency on conventional synthetic anticoccidials. This investigation evaluated the anticoccidial properties of faveira pods (Parkia platycephala pod—PpP) and their influence on productive performance in naturally infected lambs. Eighteen uncastrated Dorper × Santa Inês crossbred males (20.0 ± 2.5 kg, 5 months) were randomly allocated to three groups: G1 (0% PpP; n = 6), G2 (100% PpP replacing roughage, 30.0% of total diet; n = 6), and the control group (0% PpP plus 20 mg/kg toltrazuril; n = 5). Parasitological assessments, productive performance, and behavioral parameters were monitored over 45 days using oocyst counts, morphometric analysis, digestibility trials, and biometric measurements. Nine Eimeria species were identified, with E. crandallis, E. parva, and E. bakuensis representing 53.5% of total oocyst shedding. Group G2 demonstrated a numerical 8.5% reduction in parasite load compared to G1 (p = 0.42), while toltrazuril achieved 36.6% efficacy (p < 0.05). Species-specific effects were significant for E. crandallis, E. parva, and E. ovinoidalis (p < 0.01). A robust correlation emerged between parasite load and water consumption (r = 0.652, p = 0.0045), establishing a novel behavioral biomarker for coccidiosis monitoring. Environmental oocyst elimination decreased by 43.4% in the P. platycephala group. These findings demonstrate that PpPs possess moderate anticoccidial properties, offering a sustainable complementary strategy for integrated coccidiosis management while contributing to environmental sustainability. Full article

Chicken coccidiosis is a major parasitic disease in poultry that causes substantial economic losses worldwide. The accurate and simultaneous diagnosis of mixed infections with multiple Eimeria species remains challenging using conventional methods. In this study, we developed a multiplex TaqMan-MGB qPCR assay targeting the ITS1 region for simultaneous detection and quantification of four major pathogenic species: E. acervulina, E. necatrix, E. maxima, and E. tenella. The assay exhibited high specificity without cross-reactivity and achieved a sensitivity 100-fold greater than conventional PCR, with detection limits ranging from 10¹ to 10² copies/μL. Standard curves demonstrated strong linearity (R² ≥ 0.95) and amplification efficiency (95–113%). Repeatability was robust, with intra- and inter-assay CVs below 2%. Applied to 165 clinical samples collected from poultry farms in Fujian Province, China (2022–2024), the assay detected an overall Eimeria infection rate of 93.3%, higher than conventional PCR (89.7%). Epidemiological analysis revealed E. tenella (78.8%, [130/165]) and E. necatrix (78.8%, [130/165]) were dominant, while mixed infections were frequent (83.3%, [136/154]), including dual (45.5%, [70/154]), triple (31.2%, [48/154]), and quadruple (11.7%, [18/154]) infections. This multiplex TaqMan-MGB qPCR provides a rapid, sensitive, and quantitative tool for detecting multiple Eimeria species, greatly improving diagnostic efficiency and supporting clinical diagnosis, surveillance, and control strategies. Full article

Tan sheep, a valuable indigenous breed in China, are vulnerable to coccidiosis caused by Eimeria ovinoidalis. In this case-control study, four 8-month-old Tan sheep raised under identical conditions were enrolled, including two with confirmed E. ovinoidalis infection (the Eo group) and two healthy controls (the HC group). Integrated metagenomic and untargeted metabolomic analyses were performed to assess gut microbiota and metabolic alterations. Results showed reduced alpha diversity and a distinct microbial composition in the Eo group. LEfSe identified 38 differentially abundant bacterial species, with Prevotella sp. and Fusobacterium necrophorum enriched in the Eo group and Faecalibacterium sp. and Lachnospira sp. enriched in the HC group. KEGG and VFDB analyses revealed significant differences in microbial functional pathways and virulence factor profiles. A total of 543 metabolites were differentially expressed, involving pathways related to inflammation, stress response, and amino acid metabolism. Microbiome–metabolome correlation analysis showed that Eo-associated bacteria were positively linked to pro-inflammatory metabolites, while HC-associated taxa correlated with markers of metabolic homeostasis. These findings provide new insights into the pathogenesis of ovine coccidiosis and may inform targeted interventions. Full article

Vaccines play a crucial role in the prevention and control of chicken coccidiosis, effectively reducing economic losses in the poultry industry and significantly improving animal welfare. To ensure the production quality and immune effect of vaccines, accurate detection of chicken Coccidia oocysts in vaccine is essential. However, this task remains challenging due to the minute size of oocysts, variable spatial orientation, and morphological similarity among species. Therefore, we propose YOLO-Cocci, a chicken coccidia detection model based on YOLOv8n, designed to improve the detection accuracy of chicken coccidia oocysts in vaccine environments. Firstly, an efficient multi-scale attention (EMA) module was added to the backbone to enhance feature extraction and enable more precise focus on oocyst regions. Secondly, we developed the inception-style multi-scale fusion pyramid network (IMFPN) as an efficient neck. By integrating richer low-level features and applying convolutional kernels of varying sizes, IMFPN effectively preserves the features of small objects and enhances feature representation, thereby improving detection accuracy. Finally, we designed a lightweight feature-reconstructed and partially decoupled detection head (LFPD-Head), which enhances detection accuracy while reducing both model parameters and computational cost. The experimental results show that YOLO-Cocci achieves an mAP@0.5 of 89.6%, an increase of 6.5% over the baseline model, while reducing the number of parameters and computation by 14% and 12%, respectively. Notably, in the detection of Eimeria necatrix, mAP@0.5 increased by 14%. In order to verify the application effect of the improved detection algorithm, we developed client software that can realize automatic detection and visualize the detection results. This study will help improve the level of automated assessment of vaccine quality and thus promote the improvement of animal welfare. Full article

Hares (Lepus europaeus and Lepus timidus) play important ecological and economic roles in Kazakhstan; however, data on their parasitic fauna are scarce. This study aimed to assess the diversity, prevalence, and genetic characteristics of endoparasites in wild hare populations from central and northern Kazakhstan. From November 2022 to February 2025, 107 hares (L. europaeus, n = 46; L. timidus, n = 61) were collected in the Akmola and Karaganda regions. Parasitological and coprological analyses were conducted. Genetic and phylogenetic analyses were performed using partial sequences of the mitochondrial cox1 and nad1 genes and a partial 28S rDNA region to assess the genetic diversity and evolutionary relationships of selected parasite genera. Seven parasite taxa were identified: Mosgovoyia pectinata (6.5% in L. europaeus, 11.5% in L. timidus), Cysticercus pisiformis (4.3% in Le, 3.3% in Lt), Coenurus serialis (3.3%, only in Lt), Passalurus ambiguus (6.5% in Le, 4.9% in Lt), Nematodirus leporis (36.6% in Le, 13.4% in Lt), Eimeria spp. (9.1% in Le, 3.8% in Lt), and Trichuris leporis (1.9%, only in Lt). Genetic methods confirmed species identity and revealed phylogenetic relationships. This is the first genetically confirmed survey of endoparasites in hares in Kazakhstan. The results contribute valuable data to regional parasitology and support the need for continued wildlife health monitoring. Full article

Gastrointestinal (GI) parasites not only significantly impact goat health and productivity but can also affect human health due to the zoonotic potential of some species. This study investigates the prevalence of internal parasites within the tropical monsoon ecosystem of southern Thailand, focusing on both phenotypic and molecular characteristics of the parasites and identifying associated risk factors in caprine farming systems. A total of 276 meat goats from Nakhon Si Thammarat province were examined, indicating an overall GI parasite prevalence of 88.8% (245/276), with strongyles and Eimeria spp. identified as the dominant parasites. In addition, mixed parasitic infections were observed in 72.2% of cases, whereas single infections comprised 27.8%. Strongyle-positive fecal samples were cultured and genetically sequenced, revealing the presence of Haemonchus contortus, Trichostrongylus colubriformis, and Oesophagostomum asperum. For associated risk factors, gender and grazing with other herds significantly impacted overall GI parasitic infections, while the gender, breed, and packed cell volume (PCV) affected the strongyle infection. A correlation analysis revealed a substantial relationship between strongyle egg per gram (EPG) counts and clinical parameters, indicating that monitoring animals with low body condition scores (BCS) and high Faffa Malan Chart (FAMACHA) scores could be an effective strategy for controlling strongyle infections. These findings highlight the importance of continued research and effective farm management practices to address strongyle infections in meat goats, improving their health and agricultural productivity in tropical regions. Moreover, the detection of four zoonotic parasites (Giardia spp., H. contortus, T. colubriformis, and Fasciola spp.) indicates the necessity for the routine surveillance and monitoring of zoonotic parasites in goats to mitigate potential human health risks. Full article

Serious enteric disease caused by seven species of Eimeira continues to cause significant economic damage to the poultry industry. E. acervulina is one of the most widespread strains in farms and has a significant impact on chicken weight loss. Currently, the use of anticoccidial agents to suppress the occurrence of coccidiosis in farms is considerably restricted due to public health and environmental pollution issues. It is important to understand the protective immunity of the host against Eimeria infections with regard to natural products that could be used as alternatives to anticoccidial agents. Berberine chloride is known for its various biological functions, including its anti-parasite activity. However, its impact on intestinal morphology and immune-related activity in broilers infected with Eimeria still remains unclear. The aim of this study is to evaluate the anticoccidial effects of a berberine-based diet in broilers infected with E. acervulina and to monitor the host immune phenomenon using transcriptomic analysis. Administration of berberine to chickens infected with E. acervulina significantly reduced fecal oocyst production and intestinal lesion scores, and increased duodenal villus height, indicating anticoccidial activity and positive effects on intestinal morphology. Transcriptomic analysis of chickens infected with E. acervulina generally observed the down-regulation of metabolism-related genes and the up-regulation of cell integrity-related genes at day 4 post-infection. At day 6 post-infection, an increase in immune-related genes and cellular-homeostasis-related genes was generally observed. Berberine-treated and E. acervulina-infected chickens showed cytokine-cytokine receptor interaction in the second term in a Kyoto Encyclopedia of Genes and Genomes pathway analysis at day 4 post-infection, but not in chickens infected with E. acervulina alone, suggesting host immune changes induced by berberine. These results suggest that berberine, which exhibits anticoccidial effects, may have therapeutic and/or prophylactic potential in protecting the host from infectious and economic-loss-causing diseases, such as Eimeria infection. Full article

Background/Objectives: Poultry meat is a popular and nutritious food, valued for its high protein content and healthy fat profile. However, like other animal products, it can contain pharmaceutical residues, including coccidiostats, antimicrobials commonly used to prevent parasitic infections caused by Eimeria species. While most monitoring focuses on raw meat, it is important to understand how these compounds behave during cooking to assess potential health risks better and ensure food safety. Methods: This study examined how five different cooking methods (roasting, grilling, and microwaving, beer and wine marinating) affect the levels of eight coccidiostat residues in 45 samples of poultry muscle collected from a supermarket located in the center of mainland Portugal from May to July 2024. After applying different cooking procedures, ionophore and synthetic coccidiostat residue levels were measured using solid–liquid extraction followed by ultrahigh-performance liquid chromatography with tandem mass spectrometry (UHPLC-MS/MS). Results are expressed as percentages of the original concentrations: 100% indicates stability, values above 100% suggest a relative increase (often due to moisture loss), and values below 100% reflect a decrease, likely from heat degradation. Results: Roasting, grilling, and microwaving all increased residue concentrations—up to 198.5%, 180.1%, and 158.4%, respectively. In contrast, marinating meat in wine or beer before cooking reduced residues to 73.1% and 72.0%, suggesting a mitigating effect. The initial concentration also influenced the outcome: samples fortified at the maximum residue limit (MRL) had an overall higher mean concentration after cooking (148.3%,) than those fortified at twice the MRL (2 MRL), which averaged 124.5%. Conclusions: These results show that cooking can significantly alter coccidiostat residue levels depending on the cooking procedures and initial concentration. Ongoing monitoring and further research are essential to better understand how cooking affects these residues and their by-products. This knowledge is key to improving food safety practices and refining consumer health risk assessments. Full article

Gastrointestinal parasites impact the health and productivity of domestic birds and may even be more common in production systems with lower biosafety conditions. In this context, backyard poultry production systems (BPPS), defined as small-scale family production systems, could be more affected. However, information about its epidemiology is limited in the Central Zone of Chile. This study aimed to determine the risk factors and spatial distribution of gastrointestinal parasites in BPPS in Central Chile. Thus, feces samples were collected from 51 backyards and analyzed using copro–parasitological techniques. In parallel, an epidemiological survey was conducted on the farmers, and the data were analyzed by multivariable logistic regression to identify risk factors. Spatial analysis was performed with the detected parasite species to determine high-risk clusters. Eimeria spp. was the most frequently detected parasite (72.5%), followed by Capillaria spp. (50.9%) and Ascaridia galli (49%). Regarding parasitic burden, nearly 90% of BPPS showed low parasitic burden for Eimeria spp. and helminths. In turn, the availability of potable drinking water (95% CI: 0.054–0.905; p = 0.036) and proper ventilation of the pens (95% CI: 0.003–0.429; p = 0.009) reduced the presence of parasites. Spatial high-risk clusters were detected for Eimeria spp. (RR = 2.60; p-value < 0.0001), A. galli (RR = 2.93; p-value = 0.021), and Trichostrongylus spp. (RR = 5.85; p-value = 0.050). Full article

Coccidiosis caused by Eimeria spp. is a parasitic disease with high morbidity that affects various animal species, including rabbits. In rabbits, eleven Eimeria species have been primarily identified through microscopic examination of oocysts; however, this technique has certain limitations that make it challenging to differentiate between Eimeria species. The main objective of this study was to morphologically identify Eimeria species infecting rabbits in Romania, as well as to confirm these identifications using molecular biology techniques, specifically through the ITS-1 rRNA gene. A total of 236 samples were collected from different regions of Romania, of which 77.56% (183/236) tested positive for at least one Eimeria species. The samples were collected from rabbits raised in individual household settings, under various management systems—both in individual cages and in common ground-based enclosures. The areas of origin were chosen randomly, without applying restrictive criteria, specifically to ensure broad representativeness of the farming conditions encountered in practice, regardless of the production system or geographic specificity. The microscopic examination of morphological characteristics identified ten Eimeria species, whereas PCR results confirmed the presence of four species. It was not always possible to identify all the species present in a given sample, likely due to the predominant parasitic load and the DNA quantity of each species. The results of this study confirm that ITS-1 is a useful molecular marker for identifying Eimeria species in domestic rabbits. Full article

Family poultry production systems (FPPSs) in Chile and Argentina produce high-quality and nutritious food. However, little is known about chicken coccidiosis in these production systems. This work aimed to determine the Eimeria sp. positivity rate, circulating species, general farm management, and knowledge of the disease in FPPSs by gaining access to peri-urban markets in these two countries. The overall Eimeria sp. positivity rate, determined in 88 fecal samples, was 85.1%. Oocysts per gram in Argentinean meat-producing FPPSs were significantly higher than in Argentinean and Chilean egg-producing FPPSs. Multiplex-PCR based on seven Eimeria spp. Sequence-Characterized Amplified Region (SCAR) markers showed a great diversity of circulating species, with E. mitis (70.3%), E. acervulina (62.2%), and E. tenella (59.5%), followed by E. maxima (43.2%), E. praecox (32.4%), E. necatrix (18.9%), and E. brunetti (5.4%). Low awareness among family producers and low implementation of control measures were found. Importantly, pathogenic species were found even in asymptomatic chickens, which represents a potential chicken health threat. Furthermore, the administration of sulfonamides to broilers with clinical signs poses a risk of environmental contamination. This is the first comprehensive cross-sectional study showing that Eimeria sp. is a persistent parasite in peri-urban FPPSs in Argentina and Chile. Full article

Coccidiosis in chickens is a parasitic disease caused by Eimeria species, resulting in significant economic losses to the poultry industry. Among these species, Eimeria tenella is considered the most virulent pathogen, with its infection strongly associated with the apoptotic response of host cells. Eimeria tenella modulates host cell apoptosis in a stage-specific manner, suppressing apoptosis in the early phase to promote its intracellular development and triggering apoptosis in later stages to facilitate parasite egress and disease progression. This study established an in vitro infection model using 60 fifteen-day-old chick embryo cecal epithelial cells and infecting the cells with Eimeria tenella sporozoites at a 1:1 ratio of host cells to sporozoites. The aim was to examine the relationship between parasitic infection and the apoptotic response of host cells in the chick embryo cecal epithelial cells infected with E. tenella. The roles of the mitochondrial permeability transition pore (MPTP) and cytochrome c in intrinsic apoptosis were examined through the application of cyclosporine A (CsA), N, N, N’, N’-tetramethyl-1,4-phenylenediamine (TMPD), and ascorbate (Asc). TUNEL staining, ELISA, and flow cytometry were performed to evaluate apoptotic rates. CsA, TMPD, and Asc significantly (p < 0.01) decreased cytochrome c release, caspase-9 activation, and apoptotic rates from 24 to 120 h post-E. tenella infection. These findings highlight the significance of cytochrome c-mediated, mitochondria-dependent apoptotic pathways in parasitized chick embryo cecal epithelial cells. Full article

The growing popularity of reptiles has contributed to their reproduction in captivity. When subjected to stressful environments, such as the presence of a higher number of humans and animals, reptiles may become more susceptible to parasites. Endoparasites in captive animals may cause several clinical signs ranging from mild to severe: lethargy, anorexia, diarrhea, cloacal/penile prolapse, infertility, intestinal malabsorption syndrome, and weight loss, among others. This study aimed to assess the presence of gastrointestinal parasites in fecal samples of reptiles from a Portuguese zoo through two techniques: a fecal flotation test (using a saturated sodium chloride solution) and Mini-FLOTAC. Ninety-nine samples belonging to 22 different animal species were collected and analyzed. Parasites were identified in 53.5% of the samples. Chelonians had a higher frequency (100%), followed by lizards (56.8%) and snakes (47.4%). The eggs/oocysts found were oxyurids (36.4%), strongylids/Kalicephalus sp. (8.1%), Eimeria sp. (5.1%), Hymenolepis spp. (5.1%), ascarids (4.0%), and Isospora sp. (2.0%). Both techniques presented the same results for each sample. The high prevalence of oxyurids, as well as of other parasites, can be explained by possible environmental contamination as these reptiles are kept in captivity. This study indicated the importance of assessing parasitic infections in reptiles in zoos, where routine coprological examinations should always be considered, as well as adequate prophylaxis. Full article

The phylum Apicomplexa includes endoparasites of fish worldwide, which cause parasitic infections that can adversely affect productivity in aquaculture. They are considered bioindicators of water pollution. Piscine apicomplexan parasites can be divided into two major groups: the intracellular blood parasites (Adeleorina) and the coccidians (Eimeriorina), which can infect the gastrointestinal tract and several organs. This work aims to compile, as completely as possible and for the first time, the available information concerning the species of coccidia (Apicomplexa: Conoidasida), which has been reported from freshwater fish. A comprehensive bibliographic search was performed using all available databases and fields, including Scopus, PubMed, and Google Scholar. In the freshwater fish found, there were 173 described species. This review demonstrates that freshwater fish’s eimeriid coccidia are better studied than adeleid coccidia. Studies of coccidian freshwater fish fauna indicate a high infection with Eimeria and Goussia species. The wealthiest coccidia fauna were found in the Cypriniformes, Perciformes, Siluriformes and Cichliformes fishes. Full article