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Keywords = Crassostrea ariakensis

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18 pages, 3067 KiB  
Article
LncRNA-Mediated Tissue-Specific Plastic Responses to Salinity Changes in Oysters
by Mengshi Zhang, Jinlong Zhao, Ao Li, Mingjie Zhao, Meitong Huo, Jinhe Deng, Luping Wang, Wei Wang, Guofan Zhang and Li Li
Int. J. Mol. Sci. 2025, 26(10), 4523; https://doi.org/10.3390/ijms26104523 - 9 May 2025
Viewed by 367
Abstract
Salinity is a key environmental factor influencing the survival of aquatic organisms, and transcriptional plasticity is a crucial emergency response to environmental changes. However, most transcriptomic studies on salinity responses have not explored the expression patterns and regulatory mechanisms across different tissues. The [...] Read more.
Salinity is a key environmental factor influencing the survival of aquatic organisms, and transcriptional plasticity is a crucial emergency response to environmental changes. However, most transcriptomic studies on salinity responses have not explored the expression patterns and regulatory mechanisms across different tissues. The Suminoe oyster (Crassostrea ariakensis), a sessile estuarine species that inhabits fluctuating salinity environments, provides an excellent model for studying the molecular basis of salinity response divergence. All eight tissues responded to acute salinity stresses and exhibited distinct tissue-specific expression patterns in both mRNA and long non-coding RNA (lncRNA) profiles across three salinity conditions. The hepatopancreas and striated muscle were identified as tissues specifically sensitive to hyper- and hypo-saline stress, respectively, based on the number, expression pattern, and plasticity of differentially expressed genes (DEGs). We established lncRNA-mRNA regulatory relationships that environmentally responsive lncRNAs enhanced DEGs’ expression and underpinning tissue-specific responses. Under moderate stress, the hepatopancreas and striated muscle initiated positive responses related to water transport and shell closure, respectively. Under severe stress, the hepatopancreas activated cellular resistance pathways, while the striated muscle experienced significant cell death. Our findings provide insights into lncRNA-mediated, tissue-specific environmental responses and lay the foundation for further research into the adaptive evolution of tissue-specific regulation. Full article
(This article belongs to the Section Molecular Biology)
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13 pages, 884 KiB  
Article
Thermal Tolerance of Crassostrea (Magallana) ariakensis to Nuclear Plant Warm Water Discharges
by Lei Li, Longyu Liu, Cong Yan, Liang Wang, Yuanlv Ye, Lu Chen, Xiong Zou, Haijing Zhang, Mengni Zeng and Mei Jiang
Biology 2025, 14(3), 311; https://doi.org/10.3390/biology14030311 - 19 Mar 2025
Viewed by 460
Abstract
Nuclear power plants utilize great quantities of seawater to cool down, resulting in substantial warm water discharges that may affect nearby fisheries and marine ecosystems. This study focused on Crassostrea (Magallana) ariakensis, a commercially farmed oyster species along the southern [...] Read more.
Nuclear power plants utilize great quantities of seawater to cool down, resulting in substantial warm water discharges that may affect nearby fisheries and marine ecosystems. This study focused on Crassostrea (Magallana) ariakensis, a commercially farmed oyster species along the southern coast of China. To evaluate the thermal impacts of warm water discharges from nuclear power plants, indoor simulations replicated seasonal water temperature conditions near coastal facilities (26 °C in spring and autumn, 16 °C in winter, and 30 °C in summer). We conducted thermal tolerance static and dynamic experiments, along with a 51-day long-term experiment on suitable growth under different acclimation temperatures. The thermal effects of warm water discharges on C. ariakensis were systematically assessed through survival, growth, digestibility, and nutritional quality. The results showed that the discomfort temperature range of C. ariakensis was (48.6 ± 1.2)~(58.9 ± 3.0) °C, the critical thermal maxima (CTM) value range of C. ariakensis was (51.6 ± 1.4)~(61.2 ± 2.2) °C, and the incipient lethal temperature (ILT50) of C. ariakensis was 45.61 °C, 53.71 °C, and 55.90 °C, respectively; all these values increased gradually with the rise of acclimation temperature. After the 51-day long-term experiment on suitable growth, the temperature increase of 1 °C, 2 °C and 4 °C did not affect the soft tissue wet weight, condition index, moisture content, and fat content of C. ariakensis, but the amylase activity in digestive gland tissue decreased in different temperature experimental groups. The experimental results show that the influence of temperature rise on the growth and physiological metabolism of C. ariakensis is limited. However, based on the normal habitat temperature in summer, the long-term effects of temperature rise caused by warm water discharges need to be paid attention to. Full article
(This article belongs to the Special Issue Global Fisheries Resources, Fisheries, and Carbon-Sink Fisheries)
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14 pages, 4634 KiB  
Article
Fouling Community Characteristics in Sea Cage Farms in Leizhou Bay, China
by Yanping Zhang, Jiali Zhou and Li Liu
Water 2025, 17(4), 495; https://doi.org/10.3390/w17040495 - 10 Feb 2025
Viewed by 664
Abstract
From January to December 2022, a study on biofouling was conducted in the southeast wharf of Leizhou Bay. Over a year, a total of 44 species were recorded, belonging to 10 phyla. The dominant species in the community were coastal warm-water organisms typical [...] Read more.
From January to December 2022, a study on biofouling was conducted in the southeast wharf of Leizhou Bay. Over a year, a total of 44 species were recorded, belonging to 10 phyla. The dominant species in the community were coastal warm-water organisms typical of subtropical inner bay environments. The peak settlement period occurred between April and September, with the highest adhesion strength observed in summer. Among the dominant and representative species, Perna viridis stood out, followed by Podocerus brasiliensis, Crassostrea ariakensis, Musculus senhousei, Dreissena polymorphia, Caprella equilibra, Gammaropsis digitata, Stenothoe gallensis, Parhyale hawaiensis, Amphibalanus reticulatus, EnteromorpHa prolifera, Gracilaria bailinae, and Pennaria disticha. Due to competition for settlement space and food, individuals in the biofouling community exhibited mutual dependence or restraint and displayed a specific spatiotemporal distribution pattern adapted to environmental factors. Temperature was the most crucial environmental factor determining the geographic distribution of biofouling species, reflecting the differences in community composition across various climate zones. The number of species, settlement stage, and settlement rate of biofouling organisms were closely tied to water temperature. Additionally, local natural conditions such as salinity, dissolved oxygen, and light, as well as human activities such as aquaculture production, played significant roles in the settlement of biofouling organisms. Full article
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21 pages, 10968 KiB  
Article
The Effect of Heat Stress on Sensory Properties of Fresh Oysters: A Comprehensive Study Using E-Nose, E-Tongue, Sensory Evaluation, HS–SPME–GC–MS, LC–MS, and Transcriptomics
by Bing Fu, Chang Fang, Zhongzhi Li, Zeqian Zeng, Yinglin He, Shijun Chen and Huirong Yang
Foods 2024, 13(13), 2004; https://doi.org/10.3390/foods13132004 - 25 Jun 2024
Cited by 2 | Viewed by 2287
Abstract
Heat stress has received growing concerns regarding the impact on seafood quality. However, the effects of heat stress on the sensory properties of seafood remain unknown. In this study, the sensory properties of fresh oyster (Crassostrea ariakensis) treated with chronic heat [...] Read more.
Heat stress has received growing concerns regarding the impact on seafood quality. However, the effects of heat stress on the sensory properties of seafood remain unknown. In this study, the sensory properties of fresh oyster (Crassostrea ariakensis) treated with chronic heat stress (30 °C) for 8 weeks were characterized using electronic nose, electronic tongue, sensory evaluation, HS–SPME–GC–MS, LC–MS and transcriptomics. Overall, chronic heat stress reduced the overall sensory properties of oysters. The metabolic network constructed. based on enrichment results of 423 differential metabolites and 166 differentially expressed genes, showed that the negative effects of chronic heat stress on the sensory properties of oysters were related to oxidative stress, protein degradation, lipid oxidation, and nucleotide metabolism. The results of the study provide valuable insights into the effects of heat stress on the sensory properties of oysters, which are important for ensuring a sustainable supply of high-quality seafood and maintaining food safety. Full article
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20 pages, 13287 KiB  
Article
Morphological and Molecular Analysis Identified a Subspecies of Crassostrea ariakensis (Fujita, 1913) along the Coast of Asia
by Ya Chen, Cui Li, Ruijing Lu and Haiyan Wang
Genes 2024, 15(5), 644; https://doi.org/10.3390/genes15050644 - 19 May 2024
Cited by 1 | Viewed by 1463
Abstract
Crassostrea ariakensis (Fujita, 1913) is one of the most important economic and ecological oysters that is naturally distributed along the coast of Asia, separated by the Yangtze River estuary. They are usually compared as different populations, while there is no consensus on whether [...] Read more.
Crassostrea ariakensis (Fujita, 1913) is one of the most important economic and ecological oysters that is naturally distributed along the coast of Asia, separated by the Yangtze River estuary. They are usually compared as different populations, while there is no consensus on whether C. ariakensis in northern and southern areas should be considered as two species or subspecies. Here, we analyzed morphological characteristics, COI, 16s rRNA, mitogenome sequences, and species delimitation analysis (ASAP and PTP) to resolve the intraspecific taxonomic status of the C. ariakensis. Phylogenetic and ASAP analysis highlight that C. ariakensis was divided into N-type and S-type. PTP was unable to differentiate between the two types of C. ariakensis. The divergence time of N-type and S-type C. ariakinsis is estimated to be 1.6 Mya, using the relaxed uncorrelated lognormal clock method. Additionally, significant morphological differences exist between the two groups in terms of the adductor muscle scar color. Despite these differences, the COI (0.6%) and 16S rRNA (0.6%) genetic distance differences between N-type and S-type C. ariakensis has not yet reached the interspecific level. These results suggest that N-type and S-type C. ariakensis should be treated as different subspecies and renamed as C. ariakensis ariakensis subsp. nov and C. ariakensis meridioyangtzensis subsp. nov. Full article
(This article belongs to the Special Issue Genetic Evolution of Marine Shellfish—2nd Edition)
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13 pages, 3000 KiB  
Article
Aminotransferase Class I and II Gene Family in the Jinjiang Oyster (Crassostrea ariakensis): Genomewide Identification, Phylogenetic Analysis and Expression Profiles after Salinity Stress
by Guangyu Ge, Zhihong Liu, Tao Yu, Liqing Zhou, Xiujun Sun, Zhuanzhuan Li and Yanxin Zheng
Fishes 2023, 8(9), 459; https://doi.org/10.3390/fishes8090459 - 14 Sep 2023
Cited by 5 | Viewed by 2351
Abstract
Aminotransferases are enzymes found in living organisms that catalyze transfer reactions between amino acids and keto acids, crucial for amino acid metabolism and synthesis. Aminotransferase classes I and II play a vital role in regulating osmolarity, protecting cells, and improving metabolic homeostasis and [...] Read more.
Aminotransferases are enzymes found in living organisms that catalyze transfer reactions between amino acids and keto acids, crucial for amino acid metabolism and synthesis. Aminotransferase classes I and II play a vital role in regulating osmolarity, protecting cells, and improving metabolic homeostasis and cellular fitness. To investigate the characteristics of the aminotransferase class I and II gene family and their roles in osmotic pressure regulation in the Jinjiang oyster (Crassostrea ariakensis), the gene structure, chromosomal localization, and phylogeny were characterized and the genes’ expression in the gill under high-salt stress was analyzed. In this study, eighteen Aminotransferase class I and II genes, including SPTLCa and SPTLCb, SPTa and SPTb, ALAT2a and ALAT2b, KAT3a and KAT3b, and ASTa, ASTb and ASTc, were identified. The physicochemical properties of 11 family members were stable, with their instability factors less than 40. Subcellular localization prediction showed that aminotransferase classes I and II were localized in the cytoplasm or mitochondria. Chromosomal localization results showed that the 18 aminotransferase class I and II genes were located on eight chromosomes. All members of this gene family had the Aminotran_1_2 structural domain which is associated with osmotic pressure regulation by adjusting the conversion reaction between amino acids and keto acids. Most gene expressions showed an initial increase followed by a decrease from 0 h to 12 h when the oysters were challenged by acute stress using artificial seawater with a salinity of 40. However, the expression of CarAGT2 and CarKAT3b genes showed an increased trend with increasing stress time. This study systematically investigated the bioinformatics characteristics of the aminotransferase class I and II gene family in C. ariakensis and their role in osmotic pressure regulation, which provides scientific data for understanding the potential functions of these genes in physiological adaptation, thereby expanding the research on osmoregulation in bivalves. Full article
(This article belongs to the Special Issue Mollusk Genetic Diversity and Breeding Technology)
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15 pages, 4234 KiB  
Article
Identification and Characterization of GYS and GSK3β Provides Insights into the Regulation of Glycogen Synthesis in Jinjiang Oyster Crassostrea ariakensis
by Yan Wang, Zhihong Liu, Xi Chen, Liqing Zhou, Xiujun Sun, Tao Yu, Xiaomei Wang, Yanxin Zheng and Biao Wu
Fishes 2023, 8(2), 65; https://doi.org/10.3390/fishes8020065 - 21 Jan 2023
Cited by 6 | Viewed by 2560
Abstract
Glycogen, a stored form of glucose, is an important form of energy for aquatic shellfish, contributing to the flavor and quality of the oyster. The glycogen synthase (GYS) and glycogen synthase kinase 3β (GSK3β) are two major enzymes in the glycogenesis. However, the [...] Read more.
Glycogen, a stored form of glucose, is an important form of energy for aquatic shellfish, contributing to the flavor and quality of the oyster. The glycogen synthase (GYS) and glycogen synthase kinase 3β (GSK3β) are two major enzymes in the glycogenesis. However, the information of the two genes in the Jinjiang oyster Crassostrea ariakensis remains limited. In this study, we identified the genes of GYS and GSK3β and further explored their function in the glycogen synthesis of C. ariakensis. The GYS and GSK3β were distributed in all tested tissues, and high expression of GYS and glycogen content were detected in the gonad, labial palp, hepatopancreas, and mantle, while the high expression of GSK3β was observed in the gill and adductor muscle. The expression of GYS was positively correlated with the glycogen content, while GSK3β was negatively correlated. Additionally, knockdown of GSK3β using RNAi decreased the GYS expression, revealing the negative regulatory effect of GSK3β on GYS. These findings enrich the research data of GSK3β and GYS involved in glycogen synthesis, providing valuable information for further research on the function of GSK3β and GYS in the glycogen synthesis process of oyster. Full article
(This article belongs to the Special Issue Mollusk Genetic Diversity and Breeding Technology)
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