Search Results (32)

Herbivorous protistan grazers are ubiquitous and abundant in marine and temperate freshwater environments. However, little is known about the algivorous ciliates and their feeding habits in outdoor mass algal cultures. In this study, we report on one hypotrich ciliate, identified as Sterkiella histriomuscorum, from the outdoor mass culture of Scenedesmus in Arizona, USA. A long-term field survey revealed that this species often occurs in Scenedesmus culture in spring and summer, and can graze very heavily on Scenedesmus cells. By isolating Sterkiella cells and then observing them via light microscopy and electron microscopy, detailed information about the morphology, ultrastructure, excystment process, and feeding characteristics of the ciliate was obtained. Specifically, it seems that S. histriomuscorum has a range of different strategies for excystment, and the sharp change in the ion concentration in the environment around the cyst results in osmotic shock, which likely facilitates the excystment. Feeding experiments revealed that S. histriomuscorum preferred to graze on chlorophytes as well as the diatom Phaeodactylum tricornutum and had no interaction with chrysophytes or cyanobacteria. Molecular phylogenetic analysis based on the SSU rRNA gene sequence indicated that both the genus Sterkiella and the species S. histriomuscorum are non-monophyletic. The information obtained from this study will help advance our understanding of the biodiversity and ecological function of S. histriomuscorum, and will also be very useful in the development of early warning systems and control measures for preventing or treating this contaminant in microalgal mass cultures. Full article

In comparison with traditional species identification techniques, environmental DNA (eDNA) metabarcoding technology markedly enhances the resolution and precision of species classification, while simultaneously facilitating the efficiency and accuracy of data collection. However, the majority of extant methods for assessing biological integrity concentrate on monitoring at a single trophic level, and there is a paucity of systematic studies that consider multi-trophic level biomes in an integrated manner. Accordingly, the aim of this study was to conduct a comprehensive assessment of the multi-trophic biotic communities in the downstream section of the Gezhou Dam in the Yangtze River mainstem, which formerly constituted Chinese sturgeon spawning grounds, utilizing eDNA metabarcoding technology. Furthermore, the objective was to establish a multi-trophic Index of Biotic Integrity (IBI) assessment system. In this study, we sampled 18 sampling sites in three time periods, and reference sites were selected based on a number of factors, including the distance between the sampling site and the outfall, the extent of vegetation cover, and the degree of anthropogenic disturbance. The biological integrity of the sampling sites was then compared over different time periods (before, during, and after spawning season). The eDNA analysis enabled the construction of comprehensive biological integrity indicators, which considered fish, benthic invertebrates, zooplankton, phytoplankton, fungi, and microbial communities (It should be noted that due to the overlap of information and the weak indication of integrity of the indicators, the final indicator system will not include all taxa, but only some of them). The results demonstrated that the Index of Biotic Integrity (IBI) scores of the reference and disturbance sites exhibited notable differences in both individual and whole time periods (p < 0.05), with an observed tendency for increased integrity with distance from the dam. Positive linear correlation was observed between IBI scores and sturgeon eDNA concentrations at all sampling sites. The assessment outcomes exhibited satisfactory indicative capacity and spatial and temporal consistency, providing a reliable foundation for an ecosystem health assessment. Furthermore, the successful application of this assessment method offers novel insights and tools for future ecosystem monitoring and assessment. Full article

The Chinese sturgeon (Acipenser sinensis) is an ancient, complex autooctoploid fish species that is currently facing conservation challenges throughout its distribution. To comprehensively characterize the expression profiles of genes and their associated biological functions across different tissues, we performed a transcriptome-scale gene expression analysis, focusing on housekeeping genes (HKGs), tissue-specific genes (TSGs), and co-expressed gene modules in various tissues. We collected eleven tissues to establish a transcriptomic repository, including data from Pacific Biosciences isoform sequencing (PacBio Iso-seq) and RNA sequencing (RNA-seq), and then obtained 25,434 full-length transcripts, with lengths from 307 to 9515 bp and an N50 of 3195 bp. Additionally, 20,887 transcripts were effectively identified and classified as known homologous genes. We also identified 787 HKGs, and the number of TSGs varied from 25 in the liver to 2073 in the brain. TSG functions were mainly enriched in certain signaling pathways involved in specific physiological processes, such as voltage-gated potassium channel activity, nervous system development, glial cell differentiation in the brain, and leukocyte transendothelial migration in the spleen and pronephros. Meanwhile, HKGs were highly enriched in some pathways involved in ribosome biogenesis, proteasome core complex, spliceosome activation, elongation factor activity, and translation initiation factor activity, which have been strongly implicated in fundamental biological tissue functions. We also predicted five modules, with eight hub genes in the brown module, most of which (such as rps3a, rps7, rps23, rpl11, rpl17, rpl27, and rpl28) were linked to ribosome biogenesis. Our results offer insights into ribosomal proteins that are indispensable in ribosome biogenesis and protein synthesis, which are crucial in various cell developmental processes and neural development of Chinese sturgeon. Overall, these findings will not only advance the understanding of fundamental biological functions in Chinese sturgeon but also supply a valuable genetic resource for characterizing this extremely important species. Full article

Some East Asian rivers experienced repeated rearrangements due to Indian–Asian Plates’ collisions and an uplift of the Tibetan Plateau. For the upper Changjiang (Yangtze/Jinsha River), its ancient south-flowing course and subsequent capture by the middle Changjiang at the First Bend (FB) remained controversial. The DNA of freshwater fishes possess novel evolutionary signals of these tectonic events. In this study, mtDNA Cyt b sequences of endemic Schizopygopsis fish belonging to a highly specialized grade of the Schizothoracinae from the eastern Tibetan Plateau were used to infer the palaeo-drainages connectivity history of the upper Changjiang system. Through phylogenetic reconstruction, a new clade D of Schizopygopsis with three genetic clusters and subclusters (DI, DII, DIIIa, and DIIIb) were identified from the upper Yalong, Changjiang, and Yellow Rivers; the Shuiluo River; the FB-upper Changjiang; and the Litang River; respectively. Ancient drainage connections and capture signals were indicated based on these cladogenesis events and ancestral origin inference: (1) the upper Yalong River likely acted as a dispersal origin of Schizopygopsis fish to the adjacent upper Yellow and Changjiang Rivers at ca. 0.34 Ma; (2) the Litang River seemed to have directly drained into the upper Changjiang/Yangtze/Jinsha River before its capture by the Yalong River at ca. 0.90 Ma; (3) the Shuiluo River likely flowed south along a course parallel to the upper Changjiang before their connection through Hutiao Gorge; (4) a palaeo-lake across the contemporary Shuiluo, Litang, and Yalong Rivers was inferred to have served as an ancestral origin of clade D of Schizopygopsis at 1.56 Ma. Therefore, this study sheds light on disentangling ambiguous palaeo-drainage history through integrating biological and geological evidence. Full article

The experiment was conducted to investigate the effects of feeding rates on growth performance, liver glycolysis, gluconeogenesis, glycogen synthesis, and glycogen decomposition in juvenile largemouth bronze gudgeon (Coreius guichenoti). A total number of 600 fish were randomly distributed into 12 cylindrical plastic tanks with 50 fish per tank and triplicate tanks per treatment. Fish were fed with 2%, 3%, 4%, and 5% feeding rates (body weight per day) three times day⁻¹ for 8 w. The results indicated that the feeding rates significantly increased the body weight, weight gain rate, and specific growth rate (p < 0.05), while showing no significant effects on the condition factor and survival rate (p > 0.05). The feed conversion ratio was significantly enhanced by the feeding rate (p < 0.05), although no significant differences were observed when the feeding rate exceeded 3% (p > 0.05). The plasma glucose levels in the 4% and 5% groups were significantly higher than those in the 2% and 3% groups. Compared with other groups, the 5% group significantly increased the crucial rate-limiting enzyme activities and mRNA levels of glycolysis (PFKL and PK) (p < 0.05), while showing no significant differences on enzyme activities (PC, PEPCK, and G6P) and mRNA (pepck and g6p) levels of gluconeogenesis (p > 0.05). In addition, the mRNA levels of hepatic glut2 and glut4 in the 5% group reached the highest levels (p < 0.05). When the feeding rate exceeded 3%, hepatic glycogen and lipid accumulation were significantly increased, leading to a fatty liver phenotype. Meanwhile, the mRNA level of liver glycogen synthetase (gysl) was significantly increased (p < 0.05), while no significant difference was observed in glycogen phosphorylase (pygl) (p > 0.05). In summary, under the conditions of this study, a feeding rate exceeding 3% significantly accelerated hepatic glycogen and lipid accumulation, which ultimately induced fatty liver formation. Full article

Elongases of very-long-chain fatty acids (Elovls) are critical rate-limiting enzymes that are involved in LC-PUFA biosynthesis through catalyzing the two-carbon elongation of a pre-existing fatty acyl chain. Thus far, several Elovls have been extensively studied in teleost. However, the functional and physiological roles of Elovls in chondrichthyans have rarely been reported. In this study, we identified and characterized elovl2 from the endangered Chinese sturgeon (Acipenser sinensis) by whole genome scanning. The results show that the coding sequence of elovl2 was 894 bp in length, for a putative protein of 297 amnio acids. Comparative genomic analyses indicated that Chinese sturgeon elovl2 was evolutionarily conserved. Functional characterization in yeast demonstrated that the Chinese sturgeon Elovl2 could efficiently elongate C₂₀ (ARA and EPA) and C₂₂ (22:4n-6 and 22:5n-3) substrates, confirming its critical roles in LC-PUFA biosynthesis. Spatial and temporal expression analyses showed high elovl2 mRNA levels were detected in the liver and brain and showed an increase trend both in embryonic and post-hatching stages. Interestingly, diets with vegetable oils as lipid sources could significantly induce the high expression of elovl2 in Chinese sturgeon, implying that the endogenous LC-PUFA biosynthesis pathway was stimulated by lack of LC-PUFA in their diets. Our findings will enhance our understanding about the evolutionary and functional roles of elovl2 and provide novel insights into the LC-PUFA biosynthesis mechanism in vertebrates. Full article

Chinese sturgeon (Acipenser sinensis) is an endangered species, and the Yangtze River Estuary is an important migration channel for this species. With the scale of Chinese sturgeon restocking along the Yangtze River gradually increasing, an increasing number of artificially bred Chinese sturgeon will come to the estuary. It is urgent to make the first insights about the distribution characteristics and migration strategy of the endangered Chinese sturgeon in the Yangtze River Estuary available. So, to balance the need for information about this endangered species and its conservation, a total of 14 Chinese sturgeons were released in the waters near Chongming Island on 9 April 2021 and 20 October 2022, and 50% of them have been successfully recovered. The data demonstrated that Chinese sturgeon had a good migration ability in the Yangtze River Estuary and its adjacent waters. One sturgeon returned to the freshwater area of the estuary after spending approximately 46 days in the sea at a maximum depth of 54.5 m, and two sturgeons returned to the Yangtze River mainstream within 3.5 days after release. We propose that the Northern Channel of the estuary may be the main passway for Chinese sturgeon to undertake the river–sea migration. The bycatch data of Chinese sturgeon showed that this species may prefer the southern area of the estuary. We hypothesize that the food resources and salinity regime are the main factors that promote Chinese sturgeon to enter the shoals around the coast of Chongming Island. The ocean currents, river runoff, salinity, and food resource may affect the distribution of Chinese sturgeon along the Chinese coast. Future work on the conservation of Chinese sturgeon should focus on the marine life history and continuously enrich the research data to improve conservation strategies. Full article

Activin is a dimeric growth factor with diverse biological activities in vertebrates. This study aimed to investigate the regulatory role of the activin signaling pathway in the ovary of the endangered, cultured sturgeon species Acipenser sinensis. One activinβA subunit was identified, with a full-length complementary DNA (cDNA) sequence of 1572 base pairs. Multiple sequence alignment suggested that ActivinβA shared high sequence identities with its counterparts in four other sturgeon species. Phylogenetic analysis indicated the conserved evolution of ActivinβA among vertebrates from mammals to fish species. Transcripts of activinβA were distributed ubiquitously in the liver, kidney, intestine, ovary, midbrain, hypothalamus, and pituitary, with the highest transcription found in the pituitary. In Chinese sturgeon ovarian cells, in vitro human recombinant Activin A incubation stimulated the activin system-related gene transcriptions of activinβA, follistatin, its receptors -activinRIIA and activinRIIB, and drosophila mothers against decapentaplegic proteins (smads) smad2, smad3, and smad4. Ovary development-related mRNA levels of cyp19a1a and aromatase receptors of erα and erβ were enhanced by Activin A or human chorionic gonadotropin (hCG) incubation. Furthermore, 15 IU/mL hCG treatment increased the transcription levels of activinβA, follistatin, activinRIIA, and smad2. This suggested that the activin system was functional for the regulation of ovary development in Chinese sturgeon, possibly under the regulation of gonadotropin, by recruiting activinβA, follistatin, activinRIIA, and smad2. These results were helpful for the molecular exploration of activin signaling in fish species, as well as the ovarian maturation regulation of A. sinensis. Full article

Ecological intensification of agriculture is crucial for sustainable food production, yet the complex soil-microbial interactions in integrated farming systems remain poorly understood. This five-year study compared a Rice-Loach-Shrimp (RLS) integrated system with conventional Rice Monoculture (RM) using advanced multivariate techniques, including correlation analysis, Principal Component Analysis, Random Forest modeling, and Structural Equation Modeling. The RLS system exhibited higher values for key soil health indicators compared to RM, although the overall correlation patterns were similar. Stronger correlations among soil organic matter, enzyme activities, and microbial populations were observed in RLS, suggesting a more tightly coupled soil ecosystem. Available phosphorus and soil organic matter were identified as primary drivers of microbial community structure. The RLS system showed a slightly higher mean pH and weaker correlations between pH and other indicators compared to RM, indicating potential altered biogeochemical processes. Complex cascading effects among soil properties, enzyme activities, and microbial populations were revealed in RLS. These soil health benefits persisted throughout the study period, demonstrating the potential of RLS as an effective ecological intensification strategy for sustainable rice production. Full article

The largemouth bronze gudgeon has experienced a sharp drop in its natural population and has been listed as a protected species in China. The frequent occurrence of ovarian development obstruction from stage III to IV has restricted artificial propagation. Due to lipids being a crucial factor for ovarian development, this study aimed to characterize the ovarian lipid profile at different development stages in largemouth bronze gudgeons. Using UPLC-MS/MS, 1353 lipids belonging to 46 subclasses were identified in ovaries from largemouth bronze gudgeons. The results showed that glycerolipids and glycerophospholipids were the dominant lipids during ovarian development. Lysophosphatidyl choline (LPC), phosphatidyl choline (PC), and phosphatidylserine (PS), as the crucial phospholipids for ovarian development, were significantly reduced from stage III to IV. This may be the main cause of ovarian development obstruction for largemouth bronze gudgeons. Meanwhile, the enrichment analysis revealed that lipid metabolites are present at different ovarian development stages. Glycerophospholipid, linoleic acid, and linolenic acid metabolism were significantly enriched at stage IV. This study shows the complete picture of the ovarian lipid composition profile, and also discovers that phospholipids may be the limiting factor for ovarian development; these findings offer a theoretical basis for the artificial propagation and release of the largemouth bronze gudgeon. Full article

The Chinese sturgeon (Acipenser sinensis), a critically endangered migratory fish native to the Yangtze River estuary, is experiencing alarming population declines. Understanding the physiological and biochemical profiles of this species is paramount for its conservation. However, due to limited sample availability, blood biochemical parameters have remained understudied. In this study, we examined blood chemistry in artificially cultured Chinese sturgeon ranging from 2 to 15 years of age. Our results revealed age-related trends: total protein (TP), albumin (ALB), globulin (GLO), total cholesterol (CHOL), high-density lipoprotein (HDL), low-density lipoprotein (LDL), estrogen (E₂), testosterone (T), testosterone undecanoate (11-KT), and red blood cell count (RBC) increased with age, while glucose (GLU), uric acid (UA), and serum creatinine (CREA) decreased. Levels of C-reactive protein (CRP) declined from 3 to 7 years but rose from 8 to 15 years. Blood parameters showed stabilization with age, indicating enhanced resilience and immunity. Significant alterations in parameters at ages 2–3 and 14–15 suggest critical developmental stages. These findings are crucial for understanding sturgeon growth, development, migration, and reproduction, underscoring the necessity for targeted conservation efforts during pivotal life stages. Full article

Estimation of primary production in Qinghai Lake is crucial for the aquatic ecosystem management in the northeastern Qinghai–Tibet Plateau. This study used the Vertically Generalized Production Model (VGPM) with ocean color satellite data to estimate phytoplankton primary productivity (PP) in Qinghai Lake during the non-freezing period from 2002 to 2023. Field data from 2018 and 2023 were used to calibrate and verify the model. The results showed a seasonal trend in chlorophyll-a and PP, with the lowest values in May and peaks from June to September. Qinghai Lake was identified as oligotrophic, with annual mean chlorophyl-a of 0.24–0.40 µg/L and PP of 40–369 mg C/m²/day. The spatial distribution of PP was low in the center of the lake and high near the shores and estuaries. An interesting periodic increasing trend in PP every 2 to 4 years was observed from 2002 to 2023. This study established a remote sensing method for PP assessment in Qinghai Lake, revealing seasonal and interannual variations and providing a useful example for monitoring large saline mountain lakes. Full article

This article proposes a mechanism that triggers first maturation and spawning in coral reef (bony) fish, which allows for predicting their length at first maturity. Thus, mean lengths at first maturity (L_m) and the corresponding maximum lengths (L_max) in 207 populations of 131 species of coral reef fish were assembled and used to test the hypotheses that (a) there is, in coral reef fish, a single value of a size-related parameter acting as a trigger for their maturation and eventual spawning, and (b) that this single value is statistically the same as that published previously for other bony fish. The results, based on the assembled L_m and L_max data and on estimates of the parameter D, which link the length of fish with the relative surface of their gills, covered 44 families and L_max values ranging from 1.8 to 181.6 cm and confirmed that the threshold in (a) exists. Also, we assessed (in b) that this threshold value, i.e., L_max^D/L_m^D = 1.35 (±0.02), is not statistically different from similar estimates for other groups of teleosts, notably semelparous salmonids, cichlids, sturgeons and Chinese and Turkish freshwater and marine fish. One implication is that given ocean warming and deoxygenation, coral reef fish will not only be smaller than they currently are, but also mature and spawn at smaller sizes, and thus produce fewer, smaller eggs. Full article

As an ancient and endangered species unique to the Yangtze River in China, the wild population of the Dabry’s sturgeon has become scarce. Due to the long time till the first sexual maturity of Dabry’s sturgeon, the population of artificially bred Dabry’s sturgeon recovered slowly. As a member of the tachykinin family, TAC1 has been reported to have a variety of functions in mammals such as pain control, smooth muscle contraction and reproductive cycle regulation, but the function of Tac1 in fish has been rarely reported. In this study, we synthesized two tac1 gene products, Substance P (SP) and neurokinin A (NKA), and further verified the effect of two tac1 gene products on the secretion of related hormones in the pituitary of Dabry’s Sturgeon by intraperitoneal injection and co-culture of primary cells. Expression studies revealed that the newly cloned tac1 were mainly distributed in the hypothalamus and pituitary tissue of the brain. In prepubertal Dabry’s sturgeon, this study showed that the two gonadotropins’ mRNA levels in pituitary tissue can be significantly increased by SP and NKA through intraperitoneal injection, and the LH protein level in serum was also increased. Further study showed that both NKA and SP could promote the two gonadotropins’ mRNA expression in pituitary cells of Dabry’s sturgeon. In addition, we explored the optimal dose and time of SP and NKA on pituitary cells is 24 h and over 10 nM. These results, as a whole, suggested that tac1 gene products play an important role in gonadotropin release and gonadal development in prepubertal Dabry’s sturgeon. Full article

Since the construction of the Gezhouba Dam, Chinese sturgeon (Acipenser sinensis) numbers have gradually declined, rendering this species critically endangered according to the International Union for the Conservation of Nature. Environmental DNA (eDNA) technology plays an important role in monitoring the abundance of aquatic organisms. Species density and biomass have been proven to be estimable by researchers, but the level of accuracy depends on the specific species and ecosystem. In this study, juvenile A. sinensis, an endangered fish, were selected as the research target. Under controlled laboratory conditions in an aquarium, one, two, four, six, and eight juvenile A. sinensis were cultured in five fish tanks, respectively. Water samples were filtered at eight different time points for eDNA content analysis. Additionally, eDNA yield was tested at six different time points after a 0.114 ind./L density of A. sinensis was removed, and the employed degradation model was screened using the Akaike information criterion (AIC) and the Bayesian information criterion (BIC). The results showed that eDNA content remained stable after 3 days and exhibited a significant positive linear correlation with the density of A. sinensis (R² = 0.768~0.986). Furthermore, eDNA content was negatively correlated with the 3-day period after the removal of A. sinensis. The power function had the smallest AIC and BIC values, indicating better fitting performance. This study lays a momentous foundation for the application of eDNA for monitoring juvenile A. sinensis in the Yangtze Estuary and reveals the applicability of eDNA as a useful tool for assessing fish density/biomass in natural environments. Full article