Hydrobiology doi: 10.3390/hydrobiology5020011

Authors: Matthew E. Gruwell Amanda Welsbacher

Fast, reliable detection methods are paramount in the fight against the spread of aquatic invasive species (AIS), and eDNA techniques provide many benefits over traditional sampling methods. AIS are spreading rapidly around the world, reshaping ecosystems, outcompeting native species, and experiencing explosive population growth. Some sources cite the Laurentian Great Lakes as the most heavily invaded freshwater system in the world. The advantages of using eDNA technology for AIS detection include: (1) it is often more sensitive, (2) it can cover much more area, (3) it is less destructive, (4) it does not require trapping of threatened species, and (5) it can be done with considerably less taxonomic training. This study was implemented to test the utility of a commercially available metabarcoding assay against a targeted, qPCR approach for the detection of four AIS in Lake Erie. We sampled eight localities monthly throughout the summer of 2024 using both techniques. Our target AIS were the bloody red shrimp Hemimysis anomala, the fishhook waterflea Cercopagis pengoi, the water flea Daphnia lumholtzi, and the gammarid scud Echinogammarus ishnus. We found that the targeted, qPCR approach was more successful at AIS detection for our four target organisms than the specific, commercially available metabarcoding assay that was used.

Hydrobiology doi: 10.3390/hydrobiology5020010

Authors: Ingo B. Miller Mark V. Erdmann Kevin Lay Simon J. Pierce Richard Fitzpatrick Adam Barnett

Whale sharks (Rhincodon typus) predominantly inhabit the epipelagic layer, yet dives to at least 1928 m have been reported. Even so, current understanding of the species’ true maximum dive depth is constrained by the technological limitations of depth sensors of commercially available satellite tags, which are generally rated to a maximum depth of 2000 m. Here, we report a new maximum depth range of 1978–2527 m inferred from a Wildlife Computers custom-calibrated SPLASH10-346C finmount tag (2500 m capability), deployed on a 7 m juvenile male whale shark in the Coral Sea, Australia. This extends the currently accepted depth limit by 50–599 m.

Hydrobiology doi: 10.3390/hydrobiology5020009

Authors: Nelli Barseghyan Tigran Vardanyan Marine Dallakyan Liana Poghosyan Satenik Galstyan Roza Barseghyan Vardan Asatryan

Given the low efficiency of current actions regarding the restoration of a critically endangered species, the Sevan trout, there is an urgent need for the evaluation of ongoing strategies and prioritization of the most efficient ones. Thus, the aim of this study was the scientific justification of the effectiveness of various restoration strategies for Sevan trout wild stocks. For this, we developed an experimental design to estimate the efficiency of stocking the main spawning rivers with fingerlings. Sevan trout subspecies were released and re-captured to measure their growth rates and biological features. Also, we conducted assessments of the abiotic conditions and ecological status of rivers. Because Sevan trout fingerlings have also been used to directly stock Lake Sevan by the Foundation for “Restoration of Sevan trout stocks and development of aquaculture” in recent years, we set gill nets to capture and study Sevan trout from the lake. The results showed that releasing summer trout less than 1 g in weight into the inlets of Lake Sevan is ineffective. Although larger gegharkuni had higher survival rates, the current state of the rivers will hardly ensure the sustainability of stocks. Current investigations have also shown the viability of stocking into the lake, as supported by both 2+- and 3+-year-old specimens being reported. However, further studies of the spatial dispersion and survival of stocked juvenile trout and the state of spawning grounds in the lake would help improve restoration strategies.

Hydrobiology doi: 10.3390/hydrobiology5010008

Authors: Valery M. Dembitsky Alexander O. Terent’ev

Monoenoic fatty acids (MUFAs), defined by the presence of a single carbon–carbon double bond within a long aliphatic chain, constitute a structurally diverse and ecologically significant class of lipids widely distributed in aquatic organisms. In marine and freshwater environments, MUFAs are fundamental components of membrane phospholipids and storage lipids, where mono-unsaturation modulates melting point, lipid packing, and bilayer dynamics, enabling homeoviscous adaptation to fluctuations in temperature, pressure, salinity, and oxygen availability. Positional and geometric isomerism (e.g., cis-Δ5, Δ7, Δ9, Δ11, Δ13, and trans forms) further enhances biochemical diversity, providing sensitive chemotaxonomic markers and indicators of trophic transfer across food webs. In addition to common straight-chain monoenes, rare methyl-branched, cyclopropane-containing, and acetylenic derivatives occur in specialized aquatic taxa, reflecting evolutionary adaptation and ecological niche differentiation. Computational QSAR analyses suggest that monoenoic fatty acids and their unusual analogues occupy bioactivity spaces associated with lipid metabolism regulation, vascular and inflammatory modulation, antimicrobial defense, and membrane stabilization. This review integrates structural chemistry, biosynthesis, ecological distribution, trophic dynamics, and predicted biological activity of monoenoic fatty acids in aquatic systems, highlighting their dual role as adaptive membrane constituents and as biologically active mediators linking molecular lipid architecture to hydrobiological function and environmental change.

Hydrobiology doi: 10.3390/hydrobiology5010007

Authors: Abdulmaula Hamza Sarah Ben Zeglam Rehab Albarki Atef Limam Abdalla Elmgawshi Abdalla Karmous Bassam A. Elgamoudi Antonella Schiavo Caterina Longo

This study presents the first comprehensive checklist of Porifera along the Libyan coast, integrating historical data from grey and published literature with new records obtained from recent field surveys. Despite the historical relevance of sponge fisheries in Libya, knowledge of sponge diversity in the region remains remarkably fragmented. To address this gap, underwater surveys were conducted at the Gara and Bsis Marine Protected Areas (MPAs), where sponge specimens were collected and identified through morphological analyses. Previous studies documented 44 sponge species in Libya, with Demospongiae as the dominant class. The recent field surveys at the Gara and Bsis Island MPAs documented a total of nine species, including two new records for Libyan waters, Chalinula renieroides and Ircinia variabilis, both identified from the Gara MPA. These new records expand the known distribution of Mediterranean demosponges and contribute to a better understanding of their biogeographic patterns in an understudied region. Overall, the updated checklist comprises 46 species and represents an essential baseline for the Libyan coast. This study underscores the importance of future monitoring, emphasizing the expansion of systematic surveys, the investigation of diverse habitats, and the integration of molecular approaches to ensure a comprehensive understanding and effective conservation of Libya’s marine sponge heritage.

Hydrobiology doi: 10.3390/hydrobiology5010006

Authors: Viktor W. Schwinger Andreas M. Zipperle Parvaneh Latifi Kevin D. Heucher Michael Schubert Volker Lüderitz

This study addresses a long-term failure to achieve the good ecological status for fish fauna required by the European Water Framework Directive (WFD) in the salmonid–rhithral zone in Bavaria, Germany. To identify the causes, we compared extensive fish population data from the Eger River with data from its twin river, the Röslau. The proportion of autochthonous cold, oligo-stenothermic fish species is significantly lower in the Eger (4.97% vs. 37.31%). In addition, continuous water temperature measurements were taken at five locations from spring to early autumn in 2023. The Eger showed significantly higher water temperatures throughout the measurement period. In midsummer, differences in daily maximum temperatures exceeded 10 °C at the same altitude. The proportion of cold-water fish in the population appeared to be negatively related to the mean of summer water temperature peaks (MWTP) (R = 0.95, p < 0.01). Accordingly, restoration measures in the Eger would need to reduce the MWTP from the current 19.1–20.5 °C to at least 16–16.5 °C, which requires more detailed data on the thermal footprint of individual hydraulic structures. The anthropogenic thermal impact on the Eger was overlooked as the root cause of the problem for many years, which largely explains the ineffectiveness of previous restoration measures. At least within the salmonid–rhithral zone, we consider the ability of the standardized fish-based assessment tool (fiBS) to detect thermal deterioration to be sufficient, provided it is applied with due care.

Hydrobiology doi: 10.3390/hydrobiology5010005

Authors: Tran Duc Dien Ekaterina V. Ganzha Efim D. Pavlov

In the past decade, non-native suckermouth armored catfish, Pterygoplichthys spp., have spread throughout the highland rivers of Lam Dong province, Vietnam. We examined spatial and temporal variation in endocrine and biochemical profiles across different river reaches, river systems, and between two sampling years (2020 and 2022). Seven blood parameters related to metabolism and energy balance were measured: total and free triiodothyronine, cholesterol, triglycerides, total protein, creatinine, and direct bilirubin. Concentrations of thyroid hormones and cholesterol did not differ significantly across sites or years. Multivariate analyses indicated that thyroid-related pathways were only weakly influenced by the environmental variation, suggesting preserved thyroid homeostasis. In contrast, triglycerides, total protein, creatinine, and direct bilirubin varied among rivers and between years at the same site, likely reflecting differences in food availability and energy balance. These results suggest that biochemical variation in non-native armored catfish is primarily expressed through lipid metabolism and protein turnover, while thyroid function remains comparatively conserved across invaded river habitats.

Hydrobiology doi: 10.3390/hydrobiology5010004

Authors: Dimitra Petrocheilou Olga Petriki Martha Kaloyianni Dimitra C. Bobori

The Water Framework Directive 2000/60/EC requires the assessment of the ecological quality in all surface waters using biological indices, yet the effective application of these indices often demands extensive and long-term monitoring data. Oxidative stress biomarkers offer a promising complementary approach, as they can detect early biochemical responses of organisms to environmental degradation. In this study, we evaluated the suitability of two oxidative stress biomarkers—malondialdehyde (MDA) levels and DNA damage—in the gonads of a freshwater fish species, the Prussian carp Carassius gibelio (Bloch, 1782) as indicators of ecological condition in lakes of differing environmental quality. Fish were sampled from four lakes (Doirani, Vegoritida, Volvi, Petron; Northern Greece) representing a gradient of physicochemical and ecological quality. Both MDA concentrations and DNA damage showed significant (p < 0.05) differences among lakes. However, only DNA damage in the gonads was significantly (p < 0.05) associated with lake ecological quality as determined by the Greek Lake Fish Index (GLFI), with higher biomarker responses observed in lakes of poorer status. These findings demonstrate that oxidative stress biomarkers in C. gibelio reflect variations in lake ecological quality and may serve as sensitive, early-warning tools for biomonitoring and pollution assessment in freshwater ecosystems.

Hydrobiology doi: 10.3390/hydrobiology5010003

Authors: Ángel Urzúa Fabián Guzmán-Rivas Ana Aguilera-Macías

Small pelagic fish, including sardines, are essential to global fisheries and aquaculture feed production. However, these species are increasingly exposed to intense exploitation. In Chile, the common sardine (Strangomera bentincki), endemic to the Humboldt Current System, supports major industrial and artisanal fisheries. Landings are expected to reach 300,000 tons by 2025, mostly for fishmeal production. As a keystone species, S. bentincki is highly sensitive to environmental variability during early development, which can reduce recruitment and threaten long-term population sustainability. This interdisciplinary approach integrates ecological and biotechnological perspectives to assess the feasibility of controlled juvenile sardine production in land-based Ecological Aquaculture (EA) systems, including Recirculating Aquaculture Systems (RAS) and Integrated Multi-Trophic Aquaculture (IMTA), which are designed to reduce environmental impacts. These systems enable precise control of temperature, feeding regimes, and water quality, facilitating investigations into larval and juvenile survival, growth performance, and physiological responses under variable thermal and nutritional conditions. Emphasis is placed on fatty acid metabolism during ontogeny, particularly docosahexaenoic acid (DHA) and eicosapentaenoic acid (EPA), which are essential for somatic growth, reproductive development, and thermal tolerance. Developing standardized protocols for juvenile S. bentincki culture addresses key gaps in husbandry and physiology (temperature threshold, nutrient density, larval growth rate, etc.) while introducing a novel ecological–aquaculture integration framework. This approach links early-life ecology with applied rearing techniques to support stock enhancement, strengthen artisanal fisheries, and promote sustainable aquaculture diversification under increasing environmental variability.

Hydrobiology doi: 10.3390/hydrobiology5010002

Authors: Alan Cottingham Jake Daviot James R. Tweedley Stephen Beatty

Understanding the behavioral strategies that allow freshwater mussels to persist under environmental stress is essential for their conservation, yet burrowing behavior remains poorly quantified. We tested whether valve movement data could be used to detect and characterize burrowing in the endangered Westralunio carteri; a species endemic to a region undergoing severe climatic drying. Mussels from multiple populations were monitored individually under laboratory conditions using Hall effect sensors, and valve movement patterns were analyzed to distinguish between burrowing and non-burrowing behaviors. Burrowing was associated with rapid, high-amplitude valve movements that lengthened as burial progressed, while non-burrowing behaviors showed distinct, slower patterns. These differences indicate that valvometry can reliably identify burrowing behavior, providing a non-invasive method for monitoring mussel activity. This approach has broad applications for ecological research, conservation assessment, and early-warning biomonitoring of imperiled freshwater mussel populations.

Hydrobiology doi: 10.3390/hydrobiology5010001

Authors: Lucas Maia Garcês Fernanda Victoria Nery Dias Paulo Henrique Rocha Aride Adriano Teixeira de Oliveira

The Austro-American Side-necked Turtles originated in Gondwana and are found only in South America and Australasia. This paper aimed to review the reproductive aspects of the Chelidae family systematically. The searches were conducted in several databases, resulting in 86 studies, of which only 21 were considered adequate. The research was mainly conducted in Australia and Brazil, in both natural and laboratory settings, across different ontogenetic stages among the sixteen species studied. The analyzed publications focused on different aspects of the reproductive biology of the Chelidae family, including ecology, anatomy, morphology, behavior, and other perspectives. Thus, this study aimed to answer questions related to reproduction and the factors that can affect the preparation, mating, sexual activity, and oviposition phases, highlighting the most researched areas and those that still require attention for the conservation of these species.

Hydrobiology doi: 10.3390/hydrobiology4040034

Authors: Benito Gómez-Silva Luis Cáceres Milton Urrutia Alexandra Galetović

The Chiuchiu Pond (CCP) is an inland brackish water body in a pre-Andean scenery in the Atacama Desert, northern Chile. Presently unprotected, the CCP is attractive for tourism and a notable geosite for wildlife characterized by maintaining a fixed water level and chemical composition without surface inlets/outlets. This paper aims to characterize factors accounting for its perennial character by gathering climatic, hydrogeochemical, and morphometric information and microbiological and functional characterization. The CCP is an isolated U-shaped doline with a maximum depth of 17.5 m and vertical walls with more than 80% of soluble salts (halite and calcite) under arid conditions characterized by constant seasonal variation patterns. This is a unique case in that no similar conditions among reported wetlands or ponds have been found in the world. From our studies, it was characterized as an oligotrophic, lentic oligomictic, well-mixed water body, without thermal stratification, stable water level and hydrochemical composition, with water balance conditions from underground flows. Analysis of the microbial community revealed a core composition dominated by Proteobacteria (43.1%), Bacteroidetes (23.5%), and Cyanobacteria (10%). We provide a multidisciplinary contribution to justify urgent actions for the CCP’s conservation, representing a model for other unprotected coastal and inland wetlands in northern Chile and drylands elsewhere.

Hydrobiology doi: 10.3390/hydrobiology4040033

Authors: Gorm Rasmussen Birgit M. Therkildsen Michael I. Pedersen

Yellow eels were sampled by electrofishing in 1979, 1980, and 1981 in Vester Vedsted Stream, Denmark, which has as its outlet to the North Sea. Yellow eels were aged by burning the otoliths. The gender of the eels was not specified, and they varied from 6.5 to 48.5 cm in length. The ages varied from 0+ to 10+ years. The annual growth rate Δ varied from 3.4 cm for the youngest eels to 2.2 cm for eels over 10 years old, with a mean of 3.1 cm. Body mass wet weight was correlated to energy content (kcal), with an annual mean growth rate Δ of 5.33 kcal. In contrast to body length, the annual growth rate Δ of energy content (kcal) increased with age. Von Bertalanffy growth trajectory (cm) of length-at-age was calculated, and L∞ = 118.4 cm. Annual natural mortality M was calculated, and M was significantly dependent on body mass, i.e., high M at low body mass vs. low M at high body mass. The biological production was calculated to be 13.5 g wet weight m−2 per year. A total of 780 eel stomachs were analyzed, 287 (37%) of which were empty. Mass (wet weight, g) of food content increased more than proportionally with eel body mass. Chironomid larvae, Ephemeroptera nymphs, Simulium larvae, and Gammarus pulex were the dominant food taxa, followed by Trichoptera larvae. The size of Chironomid larvae, Ephemeroptera nymphs, and Simulium larvae prey was independent of the length of the eel, whereas the size of Gammarus pulex increased with increased eel length.

Hydrobiology doi: 10.3390/hydrobiology4040032

Authors: Tânia Vieira Madureira Maria João Rocha Eduardo Rocha Maja Jordanova

The Ohrid trout (Salmo letnica) is a species endemic to Lake Ohrid (shared by Albania and North Macedonia), which is internationally recognized for its geological longevity and unique natural features. Given that the species has distinctive biological, ecological, and evolutionary characteristics, as well as significant economic value, the decline in this trout’s population is a serious and urgent problem, deserving continuous, scientifically based management. Yet, although it is considered a “Fossil Trout”, research on this species remains limited in relation to science and conservation. To understand the current state of the art, we conducted a systematic review in Web of Science, analyzing 31 indexed articles about the Ohrid trout. These studies primarily focused on the seasonal morphological characteristics of specific organs, phylogenetics, and, to a lesser extent, the impacts of environmental contamination. However, notable gaps exist in understanding sex- and stage-specific physiology, morphotype diversity, and pollutant bioaccumulation. To address these limitations, integrative strategies that combine multi-omics biomarker development, genetic screening of broodstock, and systematic monitoring of pollution and climate-related stressors are crucial. Regional authorities should work with international organizations to establish long-term monitoring of S. letnica. This review aims to provide a critical foundation for overcoming the “Living Fossil Left Behind by Science” paradigm and to foster global initiatives to preserve the long-term survival and evolutionary legacy of this endangered species.

Hydrobiology doi: 10.3390/hydrobiology4040031

Authors: Víctor Aramayo

Meiofaunal assemblages are crucial components of benthic ecosystems, significantly contributing to organic matter cycling and energy transfer. However, baseline quantitative data from some upwelling systems remain limited. This study characterizes the abundance, vertical distribution, and secondary production of meiofauna at a coastal upwelling station off southern Peru (14°16′ S) for July 2006 (Neutral conditions) and May 2007 (moderate La Niña, LN), using four-replicated sediment cores sectioned into 0–1, 1–2, 2–5, and 5–10 cm layers. While Nematoda (families Desmodoridae, Chromadoridae, Monhysteridae, Oxystominidae, Comesomatidae) dominated the community (>79% in all layers, both years), the total taxonomic richness did not differ substantially between study periods nor across the sediment column for 2006 or for 2007. Total density (0–10 cm) fluctuated between 3916 ± 2202 Ind 10 cm−2 in 2006 and 4203 ± 2274 Ind 10 cm−2 in 2007, with non-significant changes. Biomass (µgC 10 cm−2) in 2006 ranged from 80 ± 24 in the 5–10 cm section to 455 ± 134 in the 2–5 cm section. The uppermost 0–1 cm layer showed 238 ± 155, while the 1–2 cm section reached 302 ± 69. In 2007, biomass was consistently higher in the surface layers, with maximum values in the 1–2 cm section (500 ± 534), followed by the 0–1 cm section (376 ± 34). Hierarchical clustering produced depth-ordered groups with high within-depth similarity (>80–90%). SIMPER results identified Desmodora, Comesomatidae, and Chromadoridae among the top contributors to within-depth similarity and to the dissimilarity observed between surface and subsurface assemblages. A depth-related gradient of community composition was detected, suggesting vertical habitat heterogeneity modulated by several environmental factors; however, PERMANOVA analysis residuals (96.73%) indicate a high variation not explained by ENSO phase, sediment section, or their interaction, suggesting other unmeasured factors explaining meiofaunal community structure. Meiofauna’s production ranged from 2.836 ± 0.049 gC m−2 y−1 in 2006 to 3.106 ± 1.566 gC m−2 y−1 in 2007. These findings expand the limited knowledge on meiofaunal abundance and metabolic demands in this ocean region, fostering future efforts for comparative analyses across latitudes, depth gradients, and oceanographic regimes.

Hydrobiology doi: 10.3390/hydrobiology4040030

Authors: Pedro Alves de Oliveira Filho João Paulo Ferreira Rufino Paula Ribeiro dos Santos Ariany Rabello da Silva Liebl Harison Santos de Oliveira Diany Bastos Bezerra Manoel Pio Nonato Neto Ana Paula Nunes de Sena Pedro de Queiroz Costa Neto Jesaías Ismael da Costa Jackson Pantoja-Lima Thyssia Bonfim Araújo da Silva Adriano Teixeira de Oliveira

Aquaculture faces challenges in reducing feed costs while promoting sustainable use of by-products. This study aimed to evaluate the effects of totally replacing soybean oil (SBO) with fish by-product oil (FBO) in the diet of Colossoma macropomum, focusing on growth performance, physiological and hepatic responses, meat composition, and economic viability. A total of 360 juveniles (9.1 ± 0.59) were distributed in a randomized design with six treatments (0–100% SBO replacement) and six replicates each, and fed to apparent satiation for 91 days. Growth performance did not differ significantly among treatments (p > 0.05), although fish receiving 40% FBO achieved the best feed conversion ratio among treatments. Hematological and biochemical analyses indicated that higher FBO levels (particularly 100%) indicating subtle yet adaptive physiological adjustments, such as moderate modulations in lipid metabolism and erythropoietic activity. Liver weight and hepatosomatic index decreased linearly with increasing FBO levels. In meat composition, FBO inclusion enhanced protein and reduced lipid contents. Although economic indicators were not statistically different (p > 0.05), offered the most favorable trade-off between biological performance and economic efficiency. These findings demonstrate that partial replacement of SBO with FBO, particularly at 40%, represents a sustainable and economically viable alternative for C. macropomum farming.

Hydrobiology doi: 10.3390/hydrobiology4040029

Authors: Juan Francisco Arzola-González Jesús Audomar Landeros-Armenta José Adán Félix-Ortiz Yecenia Gutiérrez-Rubio Martín Ignacio Borrego Raúl Pérez-González Jorge Payán-Alejo Eugenio Alberto Aragón-Noriega

A mark–recapture experiment was conducted off Mazatlán in the entrance of the Gulf of California to evaluate the growth of juvenile spiny lobsters (Panulirus inflatus). A total of 40 post larvae of spiny lobster were captured, marked, and maintained in plastic cages for 180 days in seawater off Mazatlán, Sinaloa, Mexico (23°12′32.4″ N 106°25′33.2″ W). Carapace length (CL in mm) was measured. Growth was estimated using the Schnute model, which encompasses four primary cases. In this study, two additional variants equivalent to the von Bertalanffy and Logistic models were also incorporated. These six models were parametrized using normal and log-normal distributions of errors. The selection of the best distribution and best model was based on the Akaike information criterion (AIC). The AIC selected the normal distribution of error and sigmoid-shaped curve as best representative of the growth pattern of juvenile spiny lobster P. inflatus. By identifying the asymptotic sigmoidal curve as the best descriptor of juvenile growth, this study offers a reliable foundation for subsequent assessments of population dynamics, resource management, and aquaculture development of P. inflatus.

Hydrobiology doi: 10.3390/hydrobiology4040028

Authors: María Cristina Guamán-Burneo Nory González-Romero Alex Santillán-Sarmiento

The Ecuadorian Tropical Andes serve as vital biodiversity hotspots, crucial for hosting and preserving unique endemic species. While numerous taxonomic groups within these hotspots have been extensively studied, microalgae remain relatively unknown. This study aimed to document the microalgal diversity of Tropical Andean lakes in Ecuador and its relationship with abiotic environmental factors. Water samples were collected from 28 lakes throughout 10 conservation areas, spanning different altitudes in the Ecuadorian Tropical Andes, along with water physical/chemical data. A total of 92 microalgal genera were identified, spanning Bacillariophyta, Chlorophyta, Glaucophyta, Ocrophyta, Cyanophyta, and Euglenophyta. Lakes such as Rodeococha, Anteojos, Chinchillas, Toreadora, Magdalena, and La Mica exhibited the highest richness of microalgal genera. A positive association between temperature and the majority of microalgal phyla, except Glaucophyta, was observed. On the other hand, negative correlations were observed between total dissolved solids and water conductivity with microalgal biodiversity. Additionally, all groups displayed negative associations with pH, except Glaucophyta. The Jaccard similarity index was low among lake communities in agreement with the uniqueness of genera found in some lakes. This study represents a fundamental baseline for future investigations into Ecuador’s microalgal diversity and its relationship with abiotic environmental factors in the delicate freshwater ecosystems of Tropical Andean lakes.

Hydrobiology doi: 10.3390/hydrobiology4040027

Authors: Joyanta Bir Prianka Paul Wasim Sabbir Khirujjaman Sumon Rimu Das

Varuna litterata is an estuarine crab species widely distributed across the Indo-Pacific region, commonly dwelling in brackish waters, mangrove forests, and tidal estuaries. In Bangladesh, while four Scylla species dominate the commercial crab market, the locally consumed V. litterata remains a biologically overlooked gem of the coastal waters. These crabs are frequently captured as a byproduct during shrimp fry collection from coastal estuaries. In this context, the current study investigates the reproductive biology, morphometric dynamics, and market potential of V. litterata collected from the Pasur River, a coastal mangrove forest-adjacent estuary of southern Bangladesh. A total of 75 individuals were collected from March to April 2023, comprising 35 males and 40 females, resulting in a sex ratio of 1:1.14 (♂:♀), with a predominance of females. A visual observation of ovary development revealed four distinct maturation stages, with Stage IV (fully mature) being the most prevalent (43%), indicating peak reproductive activity during the sampling period. Morphometric analysis revealed that the average carapace width (CW) was 31.2 ± 5.7 mm and 31.9 ± 5.8 mm and the mean carapace length (CL) was 29.3 ± 4.7 mm and 30.1 ± 4.9 mm in males and females, respectively. However, the mean body weight (BW) was 13.1 ± 4.3 g in males and 12.7 ± 3.8 g in female crabs. The dominant CW class ranges from 33 to 33.99 mm (males) and 28.99–29.99 mm (females), appear to be the most vulnerable to fishing pressure. BW-CW and CL-CW relationships demonstrated negative allometric growth, with high correlations in both sexes. Significant sexual dimorphism was observed, with males having larger cheliped dimensions, while females had broader abdomens, likely supporting reproductive functions that are essential to their conservation. The marketing of this crab remains largely informal, yet rising local demand and prices highlight its emerging commercial potential. Therefore, incorporation into aquaculture and coastal fishery development of this crab species could enhance food security, support livelihoods, and contribute to sustainable blue economy initiatives in Bangladesh.

Hydrobiology doi: 10.3390/hydrobiology4040026

Authors: Larry L. Bowman Amy L. Rodriguez Hannah Fontenot Margi Flood

Environmental DNA (eDNA) detection has emerged as a powerful, non-invasive tool for identifying aquatic organisms, particularly those that are rare, elusive, or invasive. Dreissena polymorpha (zebra mussel) is an invasive bivalve posing ecological and economic threats to North American freshwater systems. In April 2021, zebra mussels were discovered attached to a boat destined for Lake Sidney Lanier in North Georgia—a high-use recreational reservoir with no prior reports of infestation. To determine whether D. polymorpha had been introduced, we implemented a biomonitoring protocol leveraging eDNA collection and PCR-based detection. Sampling was conducted during summer 2022 across high-risk marina sites and potential habitats. Positive controls from the Tennessee River yielded expected results, while Lake Lanier samples showed no evidence of zebra mussel DNA. Our results validate using eDNA methodology for proactive biomonitoring and highlight the importance of molecular surveillance and community outreach to prevent the establishment of invasive species in vulnerable aquatic systems. This study demonstrates the utility of a scalable, replicable early detection framework that can be adopted by educational institutions, natural resource agencies, and community groups to mitigate the risk of biological invasions.

Hydrobiology doi: 10.3390/hydrobiology4040025

Authors: Abigail Archi Jaclyn M. H. Cockburn Paul V. Villard

Conventional fish population sampling methods such as electrofishing and netting, pose risks to fish and are often restricted to small, shallow headwater streams—especially where endangered species may be present. Additionally, non-capture surveying (e.g., snorkelling) can disturb fish and make observation more challenging. This study evaluates the effectiveness and reproducibility of remote underwater video (RUV) surveys in a shallow (<0.5 m deep), freshwater stream. Additionally, fish response to disturbances (e.g., shadows, noise, surface disruptions) were characterized. Fish abundance was estimated by maxN (maximum number of individuals observed in a single frame) and used multiple cameras placed in the same habitat (pool). Findings indicated a high consistency in maxN when fish numbers were low (<5 individuals), with increasing variability at higher numbers (>15 individuals). This suggests that single camera setups can reliably detect minimum abundance. Fish responses to four disturbances (e.g., shadows, noise, surface disruptions, mink) were noted throughout. Typically, these responses were short-lived, with fish returning to pre-disturbance maxN values within minutes, with the most significant response to researcher-induced disturbance occurring immediately after RUV deployment. Overall, RUVs proved effective for passive, non-capture fish monitoring in shallow, sensitive habitats, producing replicable data with minimal impact caused by researcher disturbance. This technique can be added to our toolboxes for studying small-bodied fishes in challenging environments.

Hydrobiology doi: 10.3390/hydrobiology4030024

Authors: Dong In Kim

Metabolism is fundamental to many biological processes that govern the flow of energy and materials within organisms. Recently, several interspecific studies have suggested that ontogenetic phase shifts in the metabolism of teleost fish coincide with body mass increases during early development. The morphological and behavioral changes that accompany these metabolic shifts could explain differences in intraspecific size scaling metabolism, but it remains unclear whether these shifts are widespread in a variety of aquatic organisms, including non-teleost fish. Here, a metabolic study in sterlet sturgeon (Acipenser ruthenus) was conducted to examine whether the ontogenetic phase shifts in metabolism coincide with growth in a non-teleost fish. The results were also compared with previously published metabolic scaling data for the Japanese flounder (Paralichthys olivaceus) to explore differences in intraspecific scaling patterns. The present study revealed that ontogenetic phase shifts in metabolism do occur in sterlet sturgeon. These findings indicate that non-teleost fish likely undergo scaling mechanisms in metabolism similar to those of teleost fish.

Hydrobiology doi: 10.3390/hydrobiology4030023

Authors: Yana Ermolaeva Maria Maslennikova Dmitry Golubets Arina Lavnikova Natalia Kulbachnaya Sofya Biritskaya Anastasia Solodkova Ivan Kodatenko Artem Guliguev Diana Rechile Kirill Salovarov Anastasia Olimova Darya Kondratieva Anna Solomka Alyona Slepchenko Alexandr Bashkirtsev Dmitry Karnaukhov Eugene Silow

Light pollution is becoming more widespread every year, accompanied by the active use of LED lighting. Currently, the ability of organisms to adapt to this pollution and the potential impact of LED lighting of different color temperatures and intensities on organisms remains poorly understood. In this study, we aimed to find out how long-term light pollution affects the behavior of amphipods Gammarus lacustris, and to compare their locomotor activity under different lighting conditions, taking into account the factor of shelter from light. The response of individuals was compared in group and individual experiments under daylight, without light, warm and cold LED light up to 30 lx. The individuals were from two populations: the first is not exposed to light pollution (lake No. 14), while the second is affected (the Angara River within the city of Irkutsk). The locomotor activity of amphipods was assessed in daylight, without light, warm and cold light of 2–2.5 lx and 10–11 lx in the presence and absence of shelters from light. As a result of the experiments, adaptive changes in the reaction of G. lacustris to warm light were identified in individuals from the Angara River. The importance of LED light color temperature and warm light intensity in determining amphipod response to light was also confirmed. It was found that warm and cold light have different effects on the behavior of G. lacustris, and the presence of shelters from light can reduce the negative impact of light pollution in natural conditions.

Hydrobiology doi: 10.3390/hydrobiology4030022

Authors: Matthew E. Gruwell Amanda Welsbacher Noel Moore Allegra Cangelosi Abigail Melendez Ryan Sheehan Ivor Knight

Reliable, timely and economical target organism detection in harbors and ballast water is urgently needed to prevent the spread of aquatic invasive species (AIS) by commercial ships in the North American Great Lakes (NAGL). Inter-Great Lake ships (Lakers) transport large volumes (ca. 52 million metric tons. annually) of untreated lake water between lakes, with over 50% transported against the natural flow from the lower lakes to Western Lake Superior ports. The transport of ballast water is the number one threat of AIS spread throughout the NAGL. A relatively new tool to fight the spread of AIS is the use of eDNA for rapid detection and identification of target organisms. This technology opens doors for advancing control of ballast-mediated AIS through rapid detection. To that end, we have developed species-specific, reliable eDNA primers to target specific detection of four AIS in water samples along with qPCR protocols. Target organisms were selected based on the following criteria: (1) they are known to be invasive in the lower NAGL, (2) they are established in the lower NAGL but not in Superior, (3) they are biodegradable, and (4) they are obtainable, morphologically distinct and have existing DNA sequence information. Working primers, qPCR protocols and detection limits are provided for three invertebrate species and one alga species. These species are Daphnia lumholtzi (a water flea), Cercopagis pengoi (the fishhook water flea), Echinogammarus ishnus (a scud) and Nitellopsis obtusa (Starry Stonewort).

Hydrobiology doi: 10.3390/hydrobiology4030021

Authors: Lucas E. Bernacki

Myriophyllum heterophyllum is an aquatic macrophyte that is invasive to the northeastern United States and several western European countries. Spreading by vegetative clonal propagation, especially fragmentation, extensive resources are devoted to limiting its growth and spread; however, genetic assessments are not typically included in management strategies. Reduction in genetic (clonal) diversity should accompany biomass reduction, yet without genetic assessment, the efficacy of plant removal remains unclear. This paper is the first to describe a microsatellite marker library and its use in the characterization of Myriophyllum heterophyllum. Eighty-seven tissue samples were collected across the invasive distribution of Myriophyllum heterophyllum in Maine, USA. DNA was extracted, and PCR amplification was employed to screen 13 published microsatellites. Sequencing of the amplified loci was performed to characterize repeat motifs and confirm primer binding sites. Fragment sizing of PCR amplicons was employed to determine microsatellite lengths across the 87 samples. A total of 7 of the 13 tested markers were amplified, with six of those seven found to be variable. Polyploidy was evident from allelic diversity within individuals, although precise ploidy could not be determined. Observed heterozygosity ranged from 0.16 to 1.00 across variable markers. This seven-marker library was effective in characterizing the genetic diversity of both newly discovered (<5 years) and older (>50 years) infestations and is expected to be suitable for assessment of genetic diversity in populations within the native range of M. heterophyllum. The marker library also shows potential for use in several other Myriophyllum species.

Hydrobiology doi: 10.3390/hydrobiology4030020

Authors: Ekaterina V. Nadtochii Anna S. Genelt-Yanovskaya Evgeny A. Genelt-Yanovskiy Mikhail V. Ivanov Dmitry L. Lajus

Fish coloration plays an important role in reproduction and camouflage, yet capturing color variation under field conditions remains challenging. We present a standardized, semi-automated protocol for measuring body coloration in the popular model fish threespine stickleback (Gasterosteus aculeatus). Individuals are photographed in a controlled light box within minutes of capture, and color is sampled from eight anatomically defined standard sites in human-perception-based CIELAB space. Analyses combine univariate color metrics, multivariate statistics, and the ΔE* perceptual difference index to detect subtle shifts in hue and brightness. Validation on pre-spawning fish shows the method reliably distinguishes males and females well before full breeding colors develop. Although it currently omits ultraviolet signals and fine-scale patterning, the approach scales efficiently to large sample sizes and varying lighting conditions, making it well suited for population-level surveys of camouflage dynamics, sexual dimorphism, and environmental influences on coloration in sticklebacks.

Hydrobiology doi: 10.3390/hydrobiology4030019

Authors: Su-Ok Hwang Byeong-Hun Han Hyo-Gyeom Kim Baik-Ho Kim

Freshwater ecosystems face escalating degradation, demanding real-time, scalable, and biodiversity-aware monitoring solutions. This review proposes an integrated framework combining artificial intelligence (AI), geographic information systems (GISs), and environmental DNA (eDNA) to overcome these limitations and support next-generation river health assessment. The AI-GIS-eDNA system was applied to four representative river basins—the Mississippi, Amazon, Yangtze, and Danube—demonstrating enhanced predictive accuracy (up to 94%), spatial pollution mapping precision (85–95%), and species detection sensitivity (+18–30%) compared to conventional methods. Furthermore, the framework reduces operational costs by up to 40%, highlighting its potential for cost-effective deployment in low-resource regions. Despite its strengths, challenges persist in the areas of regulatory acceptance, data standardization, and digital infrastructure. We recommend legal recognition of AI and eDNA indicators, investment in explainable AI (XAI), and global data harmonization initiatives. The integrated AI-GIS-eDNA framework offers a scalable and policy-relevant tool for adaptive freshwater governance in the Anthropocene.

Hydrobiology doi: 10.3390/hydrobiology4030018

Authors: António Tovar Faro Gonçalo Duarte Tamara Leite Maria Teresa Ferreira Paulo Branco

The deterioration of European freshwater ecosystems, driven by habitat fragmentation and connectivity loss, seriously threatens biodiversity and ecosystem integrity. While restoration efforts often focus on reconnecting river networks, ecological assessments tend to overlook the broader concept of connectivity. This study highlights the need to incorporate ecological quality into connectivity assessments, ensuring more effective restoration that is aligned with European Union (EU) conservation policies. Using the dendritic connectivity index for potamodromous (DCIp) species, we analysed seven connectivity scenarios, integrating natural and artificial barriers to assess both structural connectivity and quality-weighted connectivity. These scenarios included: (1) structural connectivity considering only natural barriers (S_NB) and (2) all barriers (S_AB); (3) quality-weighted connectivity considering natural barriers (W_NB), and (4) all barriers (W_AB); three enhanced scenarios considering all barriers with (5) improved quality (W_AB_IQ), (6) improved probability of connectivity (W_AB_IC), and (7) improved quality and probability of connectivity (W_AB_IQC). Connectivity values varied across scenarios, with the natural baseline (S_NB) showing the highest connectivity values (mean = 0.98). When the natural baseline was weighted by the GES probability (W_NB), connectivity values dropped considerably (mean = 0.30). Incorporating all barriers (W_AB) further reduced the connectivity values (mean = 0.26). The improved scenario W_AB_IQC showed notable connectivity improvements (mean = 0.40). This study underscores the importance of integrating ecological quality into river connectivity assessments. It demonstrates that restoring habitat quality alongside connectivity restoration can substantially enhance river ecosystems. Prioritising restoration in high-quality areas maximises ecological and social benefits, supports sustainable river management, improves connectivity, and promotes biodiversity conservation.

Hydrobiology doi: 10.3390/hydrobiology4020017

Authors: Aphra M. Sutherland Frederick J. Wrona David C. Barrett

Municipal wastewater effluent (MWWE) is a common source of nutrient enrichment and provides a route for emerging substances of concern (ESOCs) to enter aquatic systems. Community composition and abundance metrics of benthic macroinvertebrates are commonly utilized to assess ecological impacts associated with nutrient enrichment; however, the responses of these metrics in systems with diverse chemical mixtures from MWWE, are not well understood. This study specifically addresses the effects of cumulative loading of tertiary-treated MWWE through responses in benthic macroinvertebrate communities in experimental control and treatment streams. Treatment streams used source river water previously exposed to upstream wastewater treatment plants but with an additional 5% by volume tertiarily treated MWWE, while control streams used only source river water. Surbers and artificial substrate rock baskets were used to examine impacts on both established and colonizing benthic communities, respectively. No significant differences were observed between the control and treatment streams in any of the community metrics of well-established benthic communities. In contrast, significant decreases in colonizing taxon diversity and evenness were found between treatment and control streams. The dominant taxa (most abundant family, by percentage of sample) in the community, often filter feeders, significantly increased in percentage of the total community in treatment streams. This response was consistent with a nutrient enrichment effect, with no evidence of ESOC related toxicity. This study highlights the need for bioassessment programs to utilize approaches involving varied in-situ sampling methods and controlled exposure systems to gain a better understanding of how various stages of community-level development are impacted by urban pollutants such as MWWE.

Hydrobiology doi: 10.3390/hydrobiology4020016

Authors: Anais Rivas-Torres Manuel A. S. Graça Andrea Landeira-Dabarca Maruxa Álvarez Leandro Juen Adolfo Cordero-Rivera

Intensive forestry, particularly the establishment of monospecific plantations with exotic species, can deeply impact the ecological functioning of forest streams, where riparian leaf litter is the primary source of energy. In this study, we investigated the effects of Eucalyptus globulus afforestation on macroinvertebrate communities in 20 streams in Galicia (NW Spain) with varying levels of accumulated eucalypt leaf litter. Sampling was done in autumn 2020 and spring 2021. In autumn, six streams had leaf litter composed of >50% of eucalypt leaves, a proportion that increased to 12 streams in spring. A total of 24,705 individuals were found in autumn and 12,529 in spring, belonging to 125 taxa. Although some taxa decreased their abundance with an increase in the proportion of eucalypt litter, variability in overall macroinvertebrate abundance was mainly explained by season, stream flow, and water temperature. However, species richness and diversity were significantly lower in streams mainly subsided by Eucalyptus litter compared to those dominated by native riparian vegetation. Macroinvertebrate abundance, richness, and diversity peaked in autumn, coinciding with the influx of deciduous litterfall and lower proportion of eucalypt litter. The lower quality, low-nutrient content, and presence of feeding deterrents in Eucalyptus leaf litter compared to native deciduous tree species likely drive these observed patterns, underscoring the importance of preserving native riparian forests to sustain stream biodiversity, even in managed landscapes dominated by Eucalyptus plantations.

Hydrobiology doi: 10.3390/hydrobiology4020015

Authors: Jacob M. Hutton Robin W. Warne

Understanding the factors influencing amphibian populations is essential for effective freshwater conservation, particularly for species with biphasic life histories. This study examined how pond- and landscape-level characteristics shape larval amphibian occupancy, abundance, and detection in a remnant Tupelo-Cypress wetland in southeastern Illinois. Given the small number of available ponds (n = 4), we standardized survey effort across sites and incorporated robust hierarchical Bayesian models to evaluate environmental effects at both community and species levels. Occupancy probabilities were generally high across species, with canopy cover significantly increasing both community and species occupancy, particularly for salamanders (up to 6.4-fold). Predatory backswimmers and fish substantially reduced occupancy (by 21.7-fold and 6.0-fold, respectively). Anurans, especially Pseudacris spp., were more abundant than salamanders, with abundance positively associated with canopy cover, leaf litter, and pond perimeter. Detection probabilities were generally low and varied by species, with predatory invertebrates reducing detection up to 83.3-fold. These findings underscore the importance of maintaining canopy cover while mitigating predation risks to support amphibian populations. The application of multi-species hierarchical models provides a nuanced understanding of species-specific responses, offering valuable insights for conservation strategies in regions affected by habitat loss and climate change. However, given the limited spatial replication, these findings should be interpreted cautiously and validated through additional studies across broader temporal and spatial scales.

Hydrobiology doi: 10.3390/hydrobiology4020014

Authors: Layla Al-Shaer Brandon Baumann Murray Itzkowitz

A field study on the biparental convict cichlids (Amatitlania siquia) in Lake Xiloá, Nicaragua was conducted to understand how the loss of a parent’s parental care affects the antipredator behavior of both parents and offspring during intruder events. We hypothesized that the combined efforts of two parents would result in increased intruder aggression and decreased offspring dispersion compared to single-parents of either sex, and that single-females and males would differ in their ability to deter predators and manage offspring dispersion. Both parents in a pair chased half the intruders that single-females did and the same number as single-males, suggesting that the presence of a partner deters intruders from encroaching and affords parents more time to engage in other parental care duties. Compared to single-parents, offspring accompanied by both parents were seldom left alone and showed greater shoal cohesion—both of which would presumably lower their risk of predation. Although there were sex differences between single-parents in terms of how often they left their offspring unattended and called to them using pelvic fin-flicks, neither sex was found to be more effective at managing the distribution of their offspring. This field study provides empirical evidence to support the need for biparental care in this species and gives insight into the selection pressures shaping parental investment.

Hydrobiology doi: 10.3390/hydrobiology4020013

Authors: Anatoliy Lyutikov Alexander Korolev Artem Trifonov Anastasia Zubareva Artem Nedoluzhko

Freshwater fish species play an important role in global aquaculture. Currently, sturgeon, carp, and tilapia are at the forefront of this industry. However, as human populations continue to grow, the demand for new sources of animal protein increases, making the use of other freshwater species in aquaculture essential. The pikeperch (Sander lucioperca) is one of the most promising fish species for European aquaculture, but its usage has been hindered by a lack of effective larval-rearing protocols. Most studies focus on using cultured or nutrient-rich zooplankton for larval cultivation, while natural zooplankton from the local environment are rarely used. In this study, we aim to investigate the nutritional requirements of pikeperch larvae by describing the taxonomic diversity and biochemical composition of zooplankton collected from a natural oligotrophic lake in Northwest Russia. The chemical composition of zooplankton is characterized by a high protein content (up to 70% of dry matter), a moderate lipid content (up to 25%), and a deficiency of certain fatty acids and amino acids. Specifically, there is a low concentration of docosahexaenoic acid and methionine. The dry matter content in the zooplankton averages 10%, with nitrogen-free extracts accounting for 4% and ash making up 4%. These biochemical parameters meet the nutritional requirements of freshwater pikeperch larvae, with the notable exception of the lower levels of DHA and methionine, which are typically characteristic of freshwater zooplankton. This information sheds light on the nutritional requirements of pikeperch larvae and the development of more efficient rearing methods.

Hydrobiology doi: 10.3390/hydrobiology4020012

Authors: Daichi Nakano

Dive fisheries are widely practiced in coastal areas worldwide owing to their minimal equipment requirements and extensive historical background. Female divers in Korea and Japan have extensive knowledge of the local coastal environment and engage in sustainable fishing practices. However, the number of divers and their catches has been declining. In this study, long-term catch and effort data were collected to investigate the reasons for the decline in the catch of the sea urchin, Hemicentrotus pulcherrimus, in Mikuni, Sakai City, Fukui Prefecture, Japan. A significant correlation was observed between catch and effort, and the main reason for the decline in catch was a reduction in fishing effort. Fishermen have voluntarily limited their fishing efforts to prevent the depletion of natural stocks, and a decrease in the number of fishermen has contributed to this reduction. In addition, regulations on catchable size and fishing season were implemented. However, natural stocks appear to have declined. Although sea urchin fisheries have been sustainably practiced for a long time, current fishery management and regulations appear inadequate. Therefore, sustainable fishing requires identifying the factors that affect stock fluctuations and updating management practices.

Hydrobiology doi: 10.3390/hydrobiology4020011

Authors: Elizabeth C. Long Erika V. Iyengar

Because animals threatened by visually oriented predators may respond in sun-lit daytime but not at night, invertebrate responses to predatory challenges may yield varying results based on the time period within the 24 h daily cycle. We predicted that in laboratory experiments aquatic isopods exposed to kairomones from predatory fish would spend more time immobilized in daylight to avoid detection than those not exposed to kairomones but that this difference would disappear under the cover of nighttime darkness. We further predicted that isopods in the absence of kairomones would move at elevated rates in the daytime compared with night, seeking a precautionary proximity to shelters. However, contrary to our predictions, Caecidotea communis isopods exhibited consistent activity (movement rate and proportion of time spent moving) when exposed to kairomones or in the absence of such cues, at all of the three diurnal cycle periods examined. Thus, Caecidotea communis displayed cathemerality (sometimes called metaturnality), the first documented case of this behavior in crustaceans.

Hydrobiology doi: 10.3390/hydrobiology4020010

Authors: Arne N. Linløkken Aslak B. Grimsgaard Antti P. Eloranta

Cold-water lakes in high-latitude regions are experiencing rapid changes in community structure and functioning associated with local and global stressors (e.g., climate change, hydropower and invasive species). However, the long-term ecological responses of cold-adapted top predators are relatively poorly monitored despite their high importance for structuring ecological communities and for the provisioning of ecosystem services. We studied long-term changes (2010–2021) in the population structure and trophic niche of two cold-adapted coregonid fishes in oligotrophic Lake Osensjøen, southeastern Norway. Our gillnet surveys indicated that the whitefish (Coregonus lavaretus) population declines simultaneously with the increasing population density of roach (Rutilus rutilus), whereas vendace (Coregonus albula) showed more stable densities. Both whitefish and vendace became increasingly dominated by small-sized individuals following the increase in coexisting roach and perch (Perca fluviatilis) populations. Our stomach content and stable isotope data indicated a marked overlap in the trophic niches of whitefish and roach, with both species showing high among-individual variation in δ13C and δ15N values as compared to the more specialized zooplanktivorous vendace. Our study provides further evidence that the ongoing environmental changes in high-latitude lakes may induce rapid changes in community structures and lead to the population declines of cold-adapted fishes, likely associated with strong resource competition with warm-adapted cyprinid and percid fishes. Such shifts in fish community structure may, in turn, affect the benthic and pelagic food-web compartments and reduce valuable ecosystem services such as local fisheries targeting salmonids.

Hydrobiology doi: 10.3390/hydrobiology4020009

Authors: Alan T. Bond Wesley L. Gerrin Sarah F. McNair Martin J. Hamel

Trace elemental water chemistry in aquatic systems is primarily derived from the underlying geology of surrounding watersheds. Trace elements can be absorbed from the environment and become permanently incorporated into certain calcified structures of fish. Comparison of the trace elemental chemistry of these structures with the chemical signature of water from the watershed in which a fish was captured can help identify movement patterns. The goal of this study was to create a relatively fine scale baseline for the trace elemental water chemistry of the Chattahoochee, Ocmulgee, Oconee, and Savannah rivers within the Piedmont ecoregion of Georgia, U.S., and to distinguish any trace elements that may be useful in delineating different reaches. Principal component analysis was used to analyze ratios of Ba:Ca, Mg:Ca, Mn:Ca, Na:Ca, and Sr:Ca from samples in each river. Results suggest that Ba:Ca and Sr:Ca ratios may be useful in delimiting river reaches in each system. In addition, Na:Ca and Mn:Ca ratios may have some utility in further differentiating reaches in the Chattahoochee and Savannah rivers, respectively. The ability of these elements to differentiate reaches within these rivers lends support for their utility in fish microchemistry studies to help better understand and manage fish in these systems.

Hydrobiology doi: 10.3390/hydrobiology4010008

Authors: Rachel Collin Bert G. Drake J. Patrick Megonigal

Roots and rhizomes play diverse roles in the response of coastal wetland ecosystems to climate change through hydrobiogeomorphic and biogeochemical processes. The accumulation of living and dead belowground biomass contributes significantly to surface elevation gain, redox status through root oxygen loss and exudates, and plant transport of greenhouse gases to the atmosphere. Yet, responses of belowground biomass to global climate stressors are difficult to measure and remain poorly understood. Here, we report on the response of individual components of belowground biomass to 12 years of CO2 enrichment in a temperate tidal marsh. In both a community initially dominated by the C3 species Schoenoplectus americanus and another initially dominated by the C4 species Spartina patens, elevated CO2 increased total belowground biomass and subtly altered depth distributions of some components. In the Spartina community, this effect was the result of the direct effects of CO2 on plant biomass allocation, while any direct response in the Schoenoplectus community was difficult to detect because of changes in the relative abundance of C3 versus C4 species. In the Schoenoplectus community, belowground biomass was positively related to S. americanus stem density. Compared to the C4 community, the Schoenoplectus community had higher root and rhizome biomass and deeper rhizomes. These results highlight the importance of community composition and plant functional traits in understanding ecosystem- and community-scale responses to elevated CO2 and their potential impacts on marsh elevation.

Hydrobiology doi: 10.3390/hydrobiology4010007

Authors: Andrew Johnson Nate Taylor Amy Welsh

Muskellunge (Esox masquinongy) are a recreationally and ecologically important apex predator found throughout North America. In West Virginia, the genetic structuring and diversity of native muskellunge is poorly understood. The supplementary stocking of non-native muskellunge has further complicated the issue, as the introgression of non-native alleles and prevalence of non-native muskellunge post stocking remains unclear as well. Using ddRAD sequencing, several datasets were generated to investigate the population structure and genomic diversity of muskellunge in West Virginia. Populations stocked with New York-strain muskellunge exhibited significant introgression, with genetic composition diverging from unstocked native West Virginia populations. However, one population showed greater genetic similarity to native and unstocked populations despite New York-strain prevalence, suggesting resilience against genetic alteration. Fixed SNPs between the New York and West Virginia strains were identified that can be used for broodstock screening and the enhancement of native populations. A genetically distinct population was identified in the Little Kanawha River system, with this population having the highest levels of genomic diversity among native populations as well as a high number of private alleles. However, elevated inbreeding coefficients highlight potential conservation concerns for this unique population. This study establishes a genomic baseline for muskellunge in West Virginia and underscores the importance of preserving native genomic diversity while balancing the demands of recreational fishing programs.

Hydrobiology doi: 10.3390/hydrobiology4010006

Authors: Sara Rumbelow Marsha Williams Lance Williams

Systemic habitat destruction over the last 100 years combined with major anthropogenic stressors such as aquatic contaminants, exotic species, and economic endeavors is driving the decline in freshwater unionid species diversity. Global temperatures continue to increase, with January 2024 being the warmest on record according to the latest report by the World Meteorological Organization. Freshwater mussels play a crucial role in aquatic ecosystems, contributing significantly to benthic processes in rivers and streams, yet they remain highly sensitive to environmental changes. This study specifically investigates the thermal tolerance of the Texas pigtoe (Fusconaia askewi) under elevated temperature conditions and explores the implications for developing effective conservation strategies in freshwater ecosystems. Eighty-four individual adult Texas pigtoe mussels were collected from the upper Sabine River near Hawkins, Texas, and taken to the University of Texas at Tyler to evaluate the effects of elevated temperature, a likely factor impacting mussels in East Texas. In the thermal tolerance study presented here, 100% survival occurred at both the control (20 °C) and the 25 °C test points. The 30 °C treatment group had an overall mortality of 14% and the 35 °C treatment group showed a mortality rate of 43% by the end of the trial, suggesting the typical summer temperatures in Texas streams will result in the loss of a portion of an otherwise healthy population.

Hydrobiology doi: 10.3390/hydrobiology4010005

Authors: Jacob D. Kunsman Maya C. Schlesinger Elizabeth R. McCain

Bisphenol A, BPA, is a small molecule frequently used in large-scale plastic production. The chemical has garnered a reputation for its association with harmful human health effects, and numerous animal studies have contributed to its classification as an endocrine disruptor. Prior research has investigated the impact of the chemical on echinoderms, including seven species of sea urchin. Our project investigated the toxic effects of this chemical on two uninvestigated species: Lytechinus variegatus and Arbacia punctulata. We exposed embryos to a range of environmentally relevant BPA concentrations (1 µg/L, 10 µg/L, 100 µg/L, and 1000 µg/L) for 48 h, until the pluteus stage. Larvae were classified according to the type of abnormality they exhibited, using a light microscope, and the EC50 was determined through probit analysis and dose–response curves. We also examined isolated plutei skeletons under a scanning electron microscope to assess changes to the skeletal structure under increasing concentrations of BPA. Our results suggest BPA induces embryotoxicity and soft tissue abnormalities more severely in L. variegatus, whereas A. punctulata exhibits more resistance to these effects. The EC50 values, over 1000 µg/L for A. punctulata and approximately 260 µg/L for L. variegatus, support this. These relative values also agree with our hypothesis that sea urchin embryos in a single genus have a similar level of BPA embryotoxicity. Interestingly, under SEM examination, the A. punctulata skeletal microstructure appears to be altered as a result of BPA exposure. While the EC50s are below what has been documented in many, but not all, marine environments, longer and consistent exposure may have a more deleterious impact. These findings suggest BPA’s effects on echinoderms should be further explored with multiple forms of analysis and over the long term.

Hydrobiology doi: 10.3390/hydrobiology4010004

Authors: Paula Moura Paulo Vasconcelos Fábio Pereira André N. Carvalho Miguel B. Gaspar

The present study aimed to describe the reproductive cycle of the black-footed limpet (Patella depressa Pennant, 1777) from an intertidal rocky shore on the Algarve coast (southern Portugal). Samples were collected monthly between January 2017 and December 2018, with the species’ gametogenic cycle being described based on gonad histology and the mean gonadal index. The presence of both transitional and mosaic hermaphrodites indicates that some individuals are able to change sex (sequential hermaphroditism). Despite the occurrence of hermaphroditism, sex proportions were approximately equal, suggesting the absence of protandric sex change in this species. The population exhibited an extensive occurrence of ripe and spawning gonads throughout almost the whole study period, probably related to consecutive processes of gonadal re-ripening and partial spawning events. The reproductive dynamics of P. depressa displayed clear inter-annual differences, with a short resting period recorded in 2017 (June–August) and the absence of resting gonads in 2018. The continued monitoring of this population and collection of environmental data are required to further improve knowledge of the reproductive dynamics of this species. Such information is crucial for proposing additional management measures for the sustainable harvesting of limpets in southern Portugal.

Hydrobiology doi: 10.3390/hydrobiology4010003

Authors: Zach Klein Matt Zeigler

Biologists commonly use standard sampling protocols to ensure that data are comparable spatiotemporally. Data also need to be precise to allow for statistically meaningful comparisons. However, the effort needed to precisely sample desert fishes is unclear. We used a resampling approach to evaluate the effort requirements needed to precisely sample fishes among six wadeable rivers in the Gila River basin, New Mexico. We evaluated the number of samples that are necessary to obtain relative density estimates that had 25% relative standard error 80% of the time. We also estimated the effort needed to precisely characterize species richness. Our results indicate that precisely sampling fish in the Gila River basin is difficult. Sonora Sucker Catostomus insignis, Desert Sucker C. clarkii, Longfin Dace Agosia chrysogaster, and Speckled Dace Rhinicthyes osculus were generally the only species that could be precisely sampled. Characterizing the native species assemblage in the Gila River basin required between two and seven reaches, whereas the entire species assemblage could only be characterized in 50% of the study systems. The challenge of precisely sampling fish in the Gila River basin suggests that alternative sampling methods may be required to characterize changes in density or species distribution in desert Southwest systems.

Hydrobiology doi: 10.3390/hydrobiology4010002

Authors: Julia E. Earl Joseph F. Aubert Emma O. Michael Daniel J. Edwards

Tannins are plant secondary compounds that leach into soil and water. Tannin concentrations can be higher in lentic freshwater than in other aquatic ecosystems, which can result in toxicity to freshwater organisms. While the amount of plant material and the plant tissue concentrations affect aqueous tannin concentrations, little is known about which environmental conditions alter the removal and breakdown of tannins in freshwater, altering the exposure of freshwater organisms. We investigated the effects of soil, light, and temperature on aqueous tannin concentrations. Tannins degraded faster in the presence of and/or sorbed to wetland soils, silt, and clay but not sand. It is unclear whether finer soil particles or the chemical makeup of soils facilitated sorption and/or degradation. Contrary to previous work, we found no effect of ambient light over a 14-day period or sunlight over a 7-day period on tannin degradation, but tannins degraded faster in warmer water. Warmer freshwater ecosystems with greater silt or clay sediments are likely to have lower aqueous tannin concentrations with lower toxicity to aquatic organisms. This research used tannic acid, which contains gallotannins. Further research is needed to determine if similar patterns are found with other tannin types and the complex mixtures of different tannins found in most plants.

Hydrobiology doi: 10.3390/hydrobiology4010001

Authors: Sebastian Theis Jesse Shirton Michael Barbeau Jonathan L. W. Ruppert Mark S. Poesch

An important top-down predator, the northern pike (Esox lucius), faces harsh environmental conditions in the northern boreal ecoregion. They are often managed for recreational fishing and, more recently, to create environmental offsets; strategies aimed at balancing ecological impacts by enhancing or restoring habitats. Our study examines northern pike populations in two remote boreal lakes in northern Alberta: Steepbank and Wappau. The lakes differ in size, vegetation cover, and trophic status, providing a natural experiment for investigating northern pike growth, condition, diet, and population density. Over three years (2018–2020), northern pike were sampled using gill nets. Population metrics, including growth, condition, and stomach contents, were compared between the lakes. Steepbank, a smaller, oligotrophic lake with low vegetation cover, showed lower prey fish densities compared to the larger, eutrophic Wappau, but it did not differ in northern pike catch per unit effort. Growth rates and body condition varied significantly between the lakes, with the northern pike in Wappau exhibiting faster growth and a better condition in the older age groups, while the younger northern pike in Steepbank had higher relative weights. A diet analysis revealed significant differences in prey consumption: Steepbank northern pike displayed higher rates of conspecific predation and invertebrate consumption, particularly in the younger age classes. These findings highlight how lake characteristics and prey availability shape northern pike population dynamics, offering valuable insights for lake management approaches in northern Alberta.

Hydrobiology doi: 10.3390/hydrobiology3040024

Authors: Christopher P. Cutler Tolulope Ojo

The previously available coding region for the spiny dogfish (Squalus acanthias) AQP3-2 gene was amplified from cDNAs using PCR. Agarose gel electrophoresis gave a band of the AQP3-2 coding region, as well as multiple smaller splice variant bands. The main AQP3-2 band and the largest and most fluorescently intense pair of these splice variant bands were cloned and sequenced. Amplifications were performed on a range of tissue cDNAs, but AQP3-2 was only expressed in the kidney and brain. Quantitative PCR amplifications using pre-existing kidney cDNA from an environmental salinity acclimation experiment showed that the abundance of mRNA from both the main AQP3-2 transcript and the largest splice variant (Splice Variant 1) was lower in 120% seawater (SW) acclimated fish, although only the values for Splice Variant 1 were statistically significant. A custom-made affinity-purified rabbit polyclonal AQP3-2 antibody was produced, and this gave four bands of around the correct sizes (which were 27 and 32 kDa) for the complete AQP3-2 and Splice Variant 1 proteins. Two of the bands may have been N-glycosylated forms of these proteins. Other bands were also present on the Western blot. No bands were present when the antibody was pre-blocked by the peptide antigen. In tissue sections of the dogfish kidney, immunohistochemical localization experiments showed that AQP3-2 was expressed in the early distal tubule (EDT) and late distal tubule (LDT) nephron segments. The results suggest that AQP3-2 may be involved in cell volume regulation in the EDT and water and urea absorption in the LDT nephron segment.

Hydrobiology doi: 10.3390/hydrobiology3040023

Authors: Vasiliki Nikiforidou Aikaterini Anastasopoulou Vasileios Xenikakis Chryssi Mytilineou

S. sphyraena is a widely distributed species with low commercial value and no sufficient scientific knowledge of its biology. In the present study, the age, growth, weight–length relationship, otolith morphometry, and reproduction of the species were investigated in the Eastern Ionian Sea for the first time. The von Bertalanffy growth function parameters were L∞ = 63.65 cm, k = 0.14 year−1 and t0 = −2.01 years and Φ′ = 2.75. The negative allometric growth in weight was found. Slope b of the weight–length relationship was 2.634. For the otolith moprhometry, the variables radius, length, width, area, perimeter, roundness, circularity, form factor, rectangularity, and ellipticity were examined, which showed that the otolith shape is elongated with an elliptical and rectangular form. Six otolith variables (radius, length, width, area, perimeter, and ellipticity) showed a significant relationship with size. The sex ratio (females/males) was 1:0.74 (no statistically significant difference from 1:1), and the spawning season extended from April to June with peak values of GSI in May for females and April for males. The results of this work improve our knowledge of the species life cycle and provide basic information for species stock identification and fisheries management.

Hydrobiology doi: 10.3390/hydrobiology3040022

Authors: Yoshiaki Kitaya Yasunori Iba Toshio Shibuya Atsunori Masuda

The sea bivalve clam Tridacna crocea inhabiting the shallow sea of tropical and subtropical zones lives with the symbiotic alga zooxanthella in its mantle. Zooxanthellae algae perform photosynthesis and supply nutrients to T. crocea. Recently, the abundance of T. crocea has decreased rapidly due to overfishing in coastal areas in Okinawa, Japan. T. crocea culture systems for mass production will contribute to the conservation of T. crocea and thus marine ecosystems. Environmental control methods for T. crocea culture have not been established because of a lack of knowledge about the appropriate environmental conditions for T. crocea growth. The present study was initiated to obtain basic data for developing environmental control methods for T. crocea land-based aquaculture. The effects of water temperature, dissolved oxygen concentration, and photosynthetic photon flux density (PPFD) on the O2 exchange rates of the symbiotic system of T. crocea and zooxanthella, which are indicators of photosynthesis and respiration in the system, and the effect of daily integrated PPFD on T. crocea growth were investigated. Basic knowledge was obtained for the development of optimal environmental control technology for T. crocea clam culture. The optimum water temperature and dissolved oxygen concentration for photosynthesis in this symbiotic system were 28 °C, 5–6 mgO2 L−1 and 500 μmol m−2 d−1, respectively. The optimum daily integrated PPFD for clam growth was 20 mol m−2 d−1.

Hydrobiology doi: 10.3390/hydrobiology3040021

Authors: Mehrnoush Aminisarteshnizi Ngonidzashe A. G. Moyo

The evaluation of mitochondrial DNA and genetic analysis is helpful for economically significant species. Clarias gariepinus is a critical species in aquaculture. This study investigates the genetic diversity and population differentiation of C. gariepinus from 19 countries using 164 sequences of the mitochondrial DNA’s Cytochrome c oxidase I (COI) gene. The haplotype analysis revealed a total of 17 haplotypes, with a nucleotide diversity (π) of 0.012 and a haplotype diversity (Hd) of 0.87. The results of an AMOVA and fixation index indicated significant genetic variation and structure among the populations. Additionally, neutrality tests and mismatch distribution analysis supported the hypothesis of under-purifying selection in C. gariepinus. The findings suggested that the population did not experience expansion. In conclusion, the genetic analysis highlighted substantial variation among C. gariepinus populations from different locations, providing valuable insights for the global management of this species.

Hydrobiology doi: 10.3390/hydrobiology3040020

Authors: Carl Beierkuhnlein Bojan Djordjevic Johannes Höger Vincent Wilkens Samip Narayan Shrestha Timothy Smith Frank Weiser

Over the course of industrialization in the 20th century, vast emissions of air pollutants have occurred. The exhaust gasses contain sulfur and nitrogen oxides, which are converted to sulfuric acid and nitric acid in the atmosphere. This causes acid rain to enter aquatic and terrestrial ecosystems, the most serious consequence of which is large-scale forest dieback across Europe and North America. However, through various political measures, the exhaust gasses have been reduced and, thus, acid rain and forest dieback were stopped. Nevertheless, the lingering effects of this pollution are still present today and are reflected in hydrochemistry. More recently, fluctuating precipitation regimes are causing additional stress to ecosystems in Central Europe. Climatic extremes are becoming more pronounced with climate change. Substantial differences between drought years and years with regular precipitation are directly altering the discharge of springs. Now, two overlapping and interacting syndromes of environmental pressures can be studied in these small catchments at a landscape scale: (1) acidification and (2) climate change. In this long-term study, the waters of 102 forest springs, located in two neighboring forest landscapes in north-eastern Bavaria, Germany (Frankenwald and Fichtelgebirge), were investigated over 24 years (1996 to 2020). By linking changes in pH values with changes in precipitation and spring discharge, we found that pH increases with decreasing discharge and decreasing precipitation. This effect was strongest in the Frankenwald compared to the Fichtelgebirge. We hypothesize that this temporal pattern reflects the longer residence time and, in consequence, the increased buffering of acidic interflow in small catchments during periods of drought. However, this should not be misinterpreted as rapid recovery from acidification because this effect fades in times of enhanced precipitation. We recommend that fluctuations in weather regimes be considered when investigating biogeochemical patterns throughout forest landscapes.

Hydrobiology doi: 10.3390/hydrobiology3040019

Authors: Nathaniel P. Hitt Karli M. Rogers Zachary A. Kelly

Salmonid fishes provide an important indicator of climate change given their reliance on cold water. We evaluated temporal changes in the density of stream-dwelling brook trout (Salvelinus fontinalis) from surveys conducted over a 36-year period (1988–2023) by the Maryland Department of Natural Resources in Eastern North America. Nonparametric trend analyses revealed decreasing densities of adult fish (age 1+) in 19 sites (27%) and increases in 5 sites (7%). In contrast, juvenile fish (age 0) densities decreased in 4 sites (6%) and increased in 10 sites (14%). Declining adult brook trout trends were related to atmospheric warming rates during the study period, and this relationship was stronger than the effects of land use change or non-native brown trout. In contrast, juvenile fish trends generally increased with elevation but were not related to air temperature trends or land use change. Our analysis reveals significant changes in several brook trout populations over recent decades and implicates warming atmospheric conditions in population declines. Our findings also suggest the importance of temperature for adult survival rather than recruitment limitation in brook trout population dynamics.

Hydrobiology doi: 10.3390/hydrobiology3040018

Authors: Timea P. Neusser Anabel Onay Mona Pirchtner Katharina M. Jörger Yander L. Diez

Freshwater slugs are scarce and belong exclusively to panpulmonate Acochlidimorpha. There is a radiation of eight species of large-sized slugs living benthically in rivers on tropical Indo-Pacific Islands. In the Western Atlantic, only one small interstitial slug, Tantulum elegans Rankin, 1979, is known from the Caribbean island of St. Vincent. We recently discovered a novel species of freshwater slugs in Cuba. Here, we describe Potamohedyle espinosai n. gen. n. sp., which is the first freshwater slug in the region of the Western Atlantic with a benthic lifestyle, in 3D-microanatomical and histological detail using light and scanning electron microscopy. It shows a mix of characters from different freshwater acochlidimorph genera, such as a medium body size, the presence of an osphradial ganglion, a distal gonoduct with a muscular sphincter, a penis with a solid thorn and cuticular comb, and a basal finger with a hollow stylet. Morphological adaptations to a life in freshwater include multiplicated renopericardioducts. The taxonomic character mix justifies the establishment of a novel genus within the herein diagnostically modified freshwater family Tantulidae. A molecular phylogenetic hypothesis of riverine slugs including the first Caribbean representatives suggests that the transition to freshwater occurred once along the stemline of limnic Acochlidiidae, secondarily marine Pseudunelidae and limnic Tantulidae.

Hydrobiology doi: 10.3390/hydrobiology3030017

Authors: Anna Oliva Christina M. Doolittle Shelby A. Medlock Joseph F. Aubert Julia E. Earl

Leaf litter is an important input to freshwater systems. Leaves provide carbon, nutrients, and secondary compounds. We examined the effects of tree leaf species on chlorophyll a concentration—a proxy for phytoplankton biomass. We found that an input of Chinese tallow (Triadica sebiferum, invasive in the southeastern USA) and red maple (Acer rubrum) leaves resulted in lower chlorophyll concentrations than controls and other native species. These leaf species also leached tannins, resulting in a darker water color, and either may have caused the patterns observed. To separate these potential mechanisms (darker water leading to light limitation and tannin toxicity), we conducted a second experiment with a fully factorial design manipulating tannins and water color. We found that darker water resulted in the lowest chlorophyll concentration, suggesting light limitation. In the clear-water treatment, the addition of tannic acid lowered chlorophyll concentrations but also resulted in moderately darker water by the end of the experiment. The tannic acid may have been toxic to the algae, or there may have been some light limitation. Our results suggest that tannins that darken water color may substantially suppress phytoplankton and that tree species composition may influence both phytoplankton and the brownification of freshwater.

Hydrobiology doi: 10.3390/hydrobiology3030016

Authors: Valentina Messineo Milena Bruno Rita De Pace

Harmful algal bloom events occur in salt, brackish, and fresh water. In bodies of water such as oceans and estuaries, diatoms or dinoflagellates form “tides” that produce toxins associated with seafood poisoning, including paralytic shellfish poisoning, or respiratory distress from inhalation of aerosolized toxins. Cyanobacteria predominantly bloom in fresh water; they can produce microcystins; cylindrospermopsin; and other toxins that humans or animals might be exposed to through water contact, inhalation, or ingestion. Animals that become ill or die can be sentinels for harmful algal bloom events. In a One Health approach, information about harmful algal bloom exposures and health effects support efforts to detect these events and mitigate and prevent associated illnesses. Human, animal, and environmental health partners can work together to document the occurrence and impacts of harmful algal bloom events and characterize associated illnesses.

Hydrobiology doi: 10.3390/hydrobiology3030015

Authors: Maryam Ghasemieshkaftaki

Winter ulcer disease (WUD) is widely recognized as a serious threat to animal welfare and a major contributor to revenue loss within the aquaculture sector, particularly affecting the salmon-farming industry. This highlights the significant impact of WUD on both animal well-being and the economic sustainability of fish farming. WUD causes hemorrhagic signs and results in dermal lesions and ulcers. This disease can lead to higher mortality rates and a considerable decline in the fish’s market value. Moritella viscosa, a Gram-negative bacterium, is predominantly, but not exclusively, correlated with the emergence of WUD, mostly during the colder seasons. Waterborne transmission is the primary way for spreading the bacterium within a population. However, there is remarkable variation in the prevalence and characteristics of WUD in different regions. In Europe, this disease often occurs in the winter, and the intensity and occurrence of outbreaks are influenced by water temperature and salinity. In contrast, outbreaks are typically observed in the summer and mid-autumn in Eastern Canada. Despite the administration of various polyvalent vaccines, outbreaks of skin ulcers have been documented in Canada, and studies have highlighted the possible roles of other bacterial pathogens in Atlantic salmon. This review discusses the etiology, pathogenesis, and potential mitigation or prevention strategies for WUD, mainly in Atlantic salmon. Moreover, it underscores the necessity of conducting further investigations to discover the potential unknown causative agents of ulcerative disease and design appropriate vaccines or preventive strategies for these pathogens.

Hydrobiology doi: 10.3390/hydrobiology3030014

Authors: Lusha M. Tronstad Bryan P. Tronstad

Large rivers are difficult to sample due to their size yet critical to monitor because humans heavily rely upon and alter them. Aquatic invertebrates are commonly used to assess the ecosystem quality of streams, but methods to sample large rivers are underdeveloped. We sampled aquatic invertebrates using a Hess sampler and rock baskets in the Snake River near Jackson, Wyoming, USA. Hess samples collected more aquatic invertebrate taxa and a higher proportion of Ephemeroptera, Plecoptera, and burrowing taxa. Rock baskets collected a higher proportion of Trichoptera, filterers, and clinging taxa. Bioassessment metrics differed between sampling methods; richness, diversity, evenness, Ephemeroptera, Plecoptera, and Trichoptera (EPT), and Hilsenhoff’s biotic index produced higher values in Hess samples, and percent EPT was higher in rock baskets. Non-metric multidimensional scaling and analysis of similarity indicated that the samplers collected different assemblages (p < 0.001). The standard error of total invertebrate density was smaller and most taxa were collected with seven replicate samples. Understanding how sampling methods alter the aquatic invertebrates collected will help managers develop monitoring protocols that are best suited to the river and collect the most unbiased invertebrate assemblages.

Hydrobiology doi: 10.3390/hydrobiology3030013

Authors: Gerasimos Kondylatos Alexandros Theocharis Magdalini Charokopou Emmanouil Perakis Dimitrios Mavrouleas Konstantinos Kalaentzis Dimitris Pafras Dimitris Klaoudatos

In the Mediterranean, the bluespotted cornetfish Fistularia commersonii Rüppell, 1838, presents a minor socioeconomic impact and the assessment of any environmental impact requires more relevant data. The congeneric red cornetfish Fistularia petimba Lacepède, 1803, has expanded its distribution range within the basin but only small numbers have been reported to date. A total of 207 individuals of F. commersonii were collected between April 2021 and March 2022 from the Levantine coast of Rhodes and 92 more from various locations. Additionally, 13 individuals of Fistularia petimba were caught in March 2024 from the Aegean coasts of the island. We aim to assess the current progression of the population of the two cornetfish, the possible further exploitation of F. commersonii to boost the local fishing economy, their possible dietary overlaps and to add valuable biological and ecological data. In F. commersonii, male to female ratio (1:1.33) significantly departed from 1:1, with length–weight relationships exhibiting positive allometric growth. Six age groups were identified. The highest reproductive intensity was observed during summer. The onset of sexual maturity was estimated at 65.52 cm in total length (1.8 years). Longevity was estimated at 11.1 years with females growing larger than males. The exploitation rate (E = 0.47) indicated that the population is underexploited. The optimum and target fishing mortality were higher in comparison with the present fishing mortality (F = 0.48), indicating a potential for commercial exploitation of the species. For F. petimba, the sex ratio was 1:2.25. The species preys on crustaceans, followed by fish and molluscs. The finding of Vanderhorstia mertensi (Klausewitz, 1974) in the stomach content of both cornetfishes constitutes the second published record for Hellenic waters and the first for the Dodecanese Islands.

Hydrobiology doi: 10.3390/hydrobiology3030012

Authors: Ludivine Sanchez Arias Branden Webb Kiarash Samsami Linda Nikolova Malan Silva Henry C. Fu

Many swimming protists travel by actuating whip-like flagella to generate thrust. While many organisms’ flagella have been observed to have hair-like protrusions called mastigonemes, the function of these mastigonemes is not known. In particular, however, although theory, numerics, and some experiments suggest that mastigonemes can initiate the reversal in direction of thrust generated relative to the direction of traveling waves propagated along flagella, other experiments have found that they do not have hydrodynamic effects. Thus, it remains unclear whether mastigonemes have a hydrodynamic effect and function; additionally, any hydrodynamic effects may be species-dependent, which calls for the investigation of additional species. In this work, we report experimental observations of the cryptophyte C. paramecium that obtain their cell body, flagellar, and mastigoneme geometries, as well as their swimming kinematics and behavior. We then use the observed geometries and kinematics to numerically simulate swimming trajectories for a particularly well-characterized reorientation event, with and without various configurations of the mastigonemes. The comparison of numerical and experimental results shows that a configuration of mastigonemes in the beating plane best reproduces the observed reorientation dynamics, suggesting that in C. paramecium, although mastigonemes do not lead to gross changes in motility, such as thrust reversal, they do exert important quantitative effects.

Hydrobiology doi: 10.3390/hydrobiology3030011

Authors: Wesley X. Torres-Pérez Omar Pérez-Reyes

Urban and agricultural runoffs can transport contaminants and pesticides into freshwater ecosystems, particularly in the developing tropics. For instance, organophosphate and pyrethroids pesticides, such as Roundup, Malathion, and Permethrin, have been found in tropical streams. The uncontrolled application of these pesticides has become a growing concern due to their adverse effects on various non-targeted organisms. Unfortunately, most studies have focused on a few selected model species, ignoring the effects on other non-target organisms, which may play an important role in tropical lotic ecosystems. In addition, the biological characteristics of aquatic crustaceans, including their morphology, physiology, and behavior, make them susceptible to toxic chemicals. For this reason, this study used the widely distributed freshwater shrimp Xiphocaris elongata as a model organism to determine the acute toxicity of Permethrin, Malathion, and Roundup. Our results show that the proportion of mortality of X. elongata in each concentration group became progressively higher as the concentration of exposure increased. We also found that the synthetic pyrethroid Permethrin was the most toxic pesticide tested, with a median lethal concentration (LC50) value for 96 h of 3.96 × 10−6 µg·L−1, followed by organophosphate Malathion (8.87 µg·L−1) and Roundup (748.92 µg·L−1). Experiments with this freshwater shrimp showed a good control performance and reproducibility for the tested pesticides. This study demonstrated that X. elongata is a suitable test organism that can be a representative bioindicator of pesticide toxicity in tropical streams.

Hydrobiology doi: 10.3390/hydrobiology3030010

Authors: Sho Toshino Rintaro Ishii Seiichi Mizutani

The family Eirenidae is one of the major taxa of the order Leptothecata, comprising approximately 80 species from ten genera. In this study, taxonomic investigations, including morphological observations and molecular 16S phylogenetic analyses, were conducted on unknown Eirenidae specimens collected off the coast of Iwaki, Fukushima Prefecture, eastern Japan, in June 2022. The specimens had the following morphological characteristics: marginal warts and tentacular bulbs with lateral cirri and without adaxial papillae, a mouth with simple lips, four simple radial canals, and eight statocysts common to the genus Eutima. However, this species can be distinguished from other species of Eutima by the number of tentacles, number and shape of marginal warts, position of the gonads, and gastric peduncle length. Moreover, the monophyly of the species was evident in the 16S rRNA phylogenetic tree (as indicated by the high bootstrap value of 100%), thereby supporting the validity of the new species. Based on these results, we describe it as a new species, Eutima onahamaensis, for taxonomic stabilization. We also made detailed observations of the morphology and molecular phylogenetic analyses of one of the species newly recorded in Japan: Eutima diademata. A comparative table of the primary diagnostic characteristics of Eutima has been provided. This study provided taxonomic keys for identifying species in the genus Eutima.

Hydrobiology doi: 10.3390/hydrobiology3020009

Authors: Mai Osada Masaki Yasugi Hirotsugu Yamamoto Atsushi Ito Shoji Fukamachi

Individual identification is an important ability for humans and perhaps also for non-human animals to lead social lives. It is also desirable for laboratory experiments to keep records of each animal while rearing them in mass. However, the specific body parts or the acceptable visual angles that enable individual identification are mostly unknown for non-human animals. In this study, we investigated whether artificial intelligence (AI) could distinguish individual medaka, a model animal for biological, agrarian, ecological, and ethological studies, based on the dorsal view. Using Teachable Machine, we took photographs of adult fish (n = 4) and used the images for machine learning. To our surprise, the AI could perfectly identify the four individuals in a total of 11 independent experiments, and the identification was valid for up to 10 days. The AI could also distinguish eight individuals, although machine learning required more time and effort. These results clearly demonstrate that the dorsal appearances of this small spot-/stripe-less fish are polymorphic enough for individual identification. Whether these clues can be applied to laboratory experiments where individual identification would be beneficial is an intriguing theme for future research.

Hydrobiology doi: 10.3390/hydrobiology3020008

Authors: Su-Ok Hwang In-Hwan Cho Ha-Kyung Kim Eun-A Hwang Byung-Hun Han Baik-Ho Kim

This comprehensive review explores the escalating challenge of nutrient enrichment in aquatic ecosystems, spotlighting the dire ecological threats posed by harmful algal blooms (HABs) and excessive particulate organic matter (POM). Investigating recent advancements in water treatment technologies and management strategies, the study emphasizes the critical need for a multifaceted approach that incorporates physical, chemical, and biological methods to effectively address these issues. By conducting detailed comparative analyses across diverse aquatic environments, it highlights the complexities of mitigating HABs and underscores the importance of environment-specific strategies. The paper advocates for sustainable, innovative solutions and international cooperation to enhance global water quality and ecosystem health. It calls for ongoing advancement, regular monitoring, and comprehensive research to adapt to emerging challenges, thus ensuring the preservation of aquatic biodiversity and the protection of communities reliant on these vital resources. The necessity of integrating technological innovation, ecological understanding, and global cooperation to safeguard aquatic ecosystems for future generations is paramount.

Hydrobiology doi: 10.3390/hydrobiology3020007

Authors: Austin R. Hoffman Erika V. Iyengar

Fresh, green leaves are increasing as resources in aquatic ecosystems due to more frequent severe spring and summer storms, but research on allochthonous resources typically uses senescent leaves. We examined macroinvertebrate colonization of green leaves of three native deciduous trees (red maple, red oak, and tulip poplar) over two weeks within both a stream and fishless pond. Leaf colonization varied depending on the taxa of leaves and colonizers, submersion time, and the ecosystem examined. Within the stream, the densities of isopods (Lirceus sp.) and snails (mostly the invasive Potamopyrgus antipodarum) did not vary significantly across leaf species. In contrast, mayflies (Tricorythodes sp.) in the stream colonized tulip poplar in greater numbers than red oak leaves, while higher densities of planarians (order Tricladida) occurred within red oak leaves. The numbers of mayflies and snails decreased significantly by the second week, but the densities of isopods and planaria within stream leaf packs were consistent. In contrast, within the pond, significantly more isopods (Caecidotea communis) were collected after the first than after the second week of submersion and in tulip poplar leaves. Clams (Sphaeriidae) in the pond, on the other hand, were more prevalent in the second week but did not discriminate among leaf species. While the number of leeches (mostly Helobdella stagnalis) was consistent across weeks, significantly fewer leeches resided within tulip poplar leaves than within red oak leaves. Our results suggest that there are no consistent colonization-preference rankings of species of fresh leaves across freshwater benthic macroinvertebrate taxa. Even within a functional feeding group (e.g., the two types of isopods and snails, all detritivore-herbivores), there were differences in colonization patterns. Therefore, increased allochthonous inputs of fresh leaf litter due to severe spring- and summer-time storms are likely to promote the populations of various taxa to different extents.

Hydrobiology doi: 10.3390/hydrobiology3020006

Authors: Brooke Z. Torjman Erika V. Iyengar

Marine hermit crabs inhabiting different species of shells in the rocky intertidal may receive varied benefits and costs. Thick shell walls, sculpture, and certain silhouettes may increase protection against crushing predators and waves, but also the energy cost for bearing such a shell. To determine the relative energy demands on Pagurus granosimanus supporting one of three different species of shells commonly inhabited in nature, we measured the consumption of food by free-roaming, size-matched individuals after four days of food deprivation in the laboratory. Surprisingly, while all hermit crabs consumed a significant amount of food, that amount did not differ significantly across the types of shells inhabited, despite the significantly heavier weight of one type of shell (>150% of each of the other two species), and markedly different shell silhouettes. Whether our results were due to the inherent abilities of arthropods to support proportionally immense weights (physiology), reduced movements by animals in heavier shells (plastic behavior), or the way the hermit crabs bear the burden of the shell requires further investigation. Regardless, our results suggest that individuals of P. granosimanus that inhabit heavier shells that likely provide increased protection do not experience corresponding elevated food consumption requirements over the short term, even if those shells are not centered over the body mass of the hermit crab. Pagurus granosimanus crabs can bear the burden.

Hydrobiology doi: 10.3390/hydrobiology3020005

Authors: Renee E. Heller Alison N. Stouffer Erika V. Iyengar

While some streams have dense populations of aquatic detritivorous isopods, research on the colonization of leaf packs typically focuses on aquatic insects. To determine whether shifts in dominant local forest species might impact isopod populations, we placed leaf packs of red/sugar maple, American beech, and red oak on the substratum of riffles and pools in Cedar Creek (Allentown, PA, USA) in April 2019. We retrieved the packs after one week, re-deployed them, and re-collected them after two weeks of submersion, enumerating the number of isopods (Lirceus sp.) upon each retrieval. Surprisingly, neither the species of leaf nor the stream microhabitat significantly affected the number of isopods. However, the duration of leaf conditioning was important; significantly more isopods inhabited leaves after two weeks of submersion than after only one week. Maple and oak leaves displayed significantly more skeletonization after two weeks than the beech leaves, which remained intact. However, the similar numbers of isopods across leaf species suggest either the presence of acceptable, consumable microbial communities on all three species of leaves or that a tradeoff exists between the value of food and the importance of refuge provided by intact leaves.

Hydrobiology doi: 10.3390/hydrobiology3010004

Authors: Georgina Bramwell Emi S. Ab Rahim Aaron G. Schultz Antoine M. Dujon Kim Weston Brett A. Ingram Sam Jahangard Frédéric Thomas Beata Ujvari Craig D. H. Sherman

Australian blue mussels (Mytilus spp.) are an increasingly important sustainable product of the Australian aquaculture industry. Although important for commercial fisheries, aquaculture may have adverse environmental and ecological impacts. This study assessed the impact of standard hatchery-imposed selection practices on the genetic diversity of farmed blue mussels. Using microsatellite markers, relatedness and genetic structure analyses showed that hatchery-reared larvae have high levels of genetic diversity without a significant decline as they move through the hatchery rearing process. Selection and/or genetic drift does appear to be operating during the hatchery rearing process, however, evidenced by an increase in relatedness among larvae over time. Significant shifts in allele frequency as well as genetic clusters provides further evidence that selection is acting on larvae due to the selection practice applied at the hatchery. Comparison of the level of genetic diversity and genetic differentiation of adults from wild and farmed populations provided no evidence that farmed mussels have lower diversity, or that they are genetically swamping local natural populations. The data suggest that careful design and implementation of mussel breeding programs can maintain high genetic diversity among larvae that does not lead to genetic swamping of natural mussel populations in the surrounding area.

Hydrobiology doi: 10.3390/hydrobiology3010003

Authors: Gerasimos Kondylatos Alexandros Theocharis Manolis Mandalakis Maria Avgoustinaki Teodora Karagyaurova Zoi Koulocheri Sofia Vardali Dimitris Klaoudatos

The devil firefish Pterois miles (Bennett 1828) is recognized as one of the 100 worst invasive alien species (IAS) in the Mediterranean Sea with significant socioeconomic and ecological implications. A total of 363 individuals were collected between April 2021 and March 2022 from the Levantine Sea (the Eastern Mediterranean), aiming to assess the current progression of the population. The male to female ratio (1:1.03) did not significantly depart from 1:1, with length–weight relationships exhibiting positive allometric growth. Five age groups were identified, with the third and fourth age groups being the predominant (74% of the population). The highest reproductive intensity was observed during summer followed by autumn. The onset of sexual maturity (L50) for the total population was estimated at 22.44 cm in total length (2.1 years). The asymptotic length was estimated at 45.35 cm for the total population, with males growing larger than females. Longevity was estimated at 14.4 years for the total population. The inflection point was estimated at 4.31 years for the total population. Length with a 50% probability of capture (LC50) was estimated at 23.03 cm, with the respective age (t50) of 2.2 years. The exploitation rate (E = 0.48) indicated that the population is underexploited. The optimum (Fopt) and target (Flim) fishing mortality were higher in comparison with the present fishing mortality (F = 0.41), indicating a potential for commercial exploitation of the species.

Hydrobiology doi: 10.3390/hydrobiology3010002

Authors: Daniela R. de Figueiredo

Under the Climate Change scenario, the occurrence of Harmful Cyanobacterial Blooms (HCBs) is an increasingly concerning problem. Particularly for inland freshwaters, that have human populations depending on them for consumption or recreation, HCBs can lead to serious ecological damages and socio-economic impacts, but also to health risks for local communities. From satellite imagery to molecular data, there is an increasing number of methodological approaches that can help improve the monitoring and prediction of cyanobacterial blooms. However, although each methodology has its own strengths and limitations, generally there is a lack of data addressing specific and intraspecific information, which has implications for the modelling and prediction of the real dynamics and toxicity of HCBs. The present review intends to make a quick overview on current approaches to monitor cyanobacterial blooms and provide a tier-based integrative perspective for their application. A transversal monitoring at a wide scale should be enhanced but cannot rely only on pigment levels but rather include the specific and intraspecific diversity information that can be obtained from modern molecular tools. This is crucial to achieve the effective prediction, monitoring and management of HCBs under their increasing occurrence and severity trends in freshwaters.

Hydrobiology doi: 10.3390/hydrobiology3010001

Authors: Alessandro Nota Alfredo Santovito Raffaele Gattelli Francesco Tiralongo

The red swamp crayfish Procambarus clarkii (Girard, 1852), native to the southern/southeastern United States and northern Mexico, has been introduced in many countries worldwide. The species has a remarkable invasiveness due to its high reproductive rate and ability to tolerate broad ranges of water parameters like salinity. Nevertheless, no consistent observations of P. clarkii have been reported in the marine environment until now. Data demonstrating the presence of the crayfish within marine ecosystems were collected by a personal acquaintance and two volunteers who published photos of the species on Facebook marine biology and fishing groups. The species was identified based on photos taken by these people in the described areas. P. clarkii has been spotted in three different localities, in two of which observations are recurrent. The species can survive miles from the nearest freshwater stream and could potentially colonise marine waters at depths up to 20 m. The multiple observations of P. clarkii collected in our study uncover a persistent presence of the species within some marine areas, rather than its mere sporadic occurrence. Our results highlight the need for further investigation to obtain a comprehensive understanding of the crayfish’s ability to withstand salinity and colonise the marine environment.

Hydrobiology doi: 10.3390/hydrobiology2040039

Authors: Nikolay N. Marfenin Vitaly S. Dementyev Evgeny V. Nikolaev

The temperature of the water surface layer in the Arctic may increase significantly in the coming decades. To what extent will shallow-water fauna be affected by warming? We investigated this issue using an example of one species of colonial hydroid, Dynamena pumila. We judged its reaction to warming via its pulsation activity and the growth of stolons. Pulsations of the coenosarc in colonial hydroids are a sensitive indicator of the body’s reaction to the influence of environmental factors. We tested the ability of D. pumila colonies to survive and adapt to existing at 25 °C for five days. After raising the temperature from 14 °C to 25 °C, colony growth and the pulsation of stolon growth tips on the first day increased and then decreased during the day. In the following days, the growth pulsations almost ceased, the colonies stopped growing, and their coenosarcs began to exfoliate from their perisarcs. However, by the fourth day, this process slowed down, and the colonies existed in an economy mode of experiencing unfavourable conditions. The thermal shock continued in the experiment for five days. Then, after the temperature dropped from 25 °C to 15–16 °C, all the colonies recovered within five days and continued to grow.

Hydrobiology doi: 10.3390/hydrobiology2040038

Authors: Giacomo Sardo Michele Luca Geraci Fabio Falsone Charles Odilichukwu R. Okpala Danilo Scannella Antonino Titone Sergio Vitale

The mantis shrimp Rissoides pallidus (Giesbrecht, 1910) is a rarely reported crustacean species in the central Mediterranean Sea. In December 2020, during a trawl survey off Mazara del Vallo harbor (Strait of Sicily), two specimens of R. pallidus were captured on coastal detritus and coastal terrigenous mud bottoms at about 132 and 152 m depths. Additional information specific to biometrics, bottom types, depth preference, habitats, and geographic distribution of this crustacean species are provided.

Hydrobiology doi: 10.3390/hydrobiology2040037

Authors: Dieter Weber Traian Brad

Niphargus carolinensis sp. nov. was sampled from the Carolina Mine located in North Rhine–Westphalia, Germany. The new species is described and compared to phylogenetically related species and species identified in nearby locations. The three phylogenetic markers (i.e., COI, 28S rRNA and ITS2) studied in the examined specimens had different sequences compared to those belonging to species present in locations neighboring the Carolina Mine, i.e., in a radius of 40 km. N. carolinensis sp. nov. is a small-to-medium-sized species that is poorly setose; has a relatively short antenna I, trapezoidal gnathopod propodites, long pereopod VI, and short uropod III; and is not differentiated sexually. The new species described herein is a case of narrow endemism and adds to the diversity of the genus Niphargus in Germany. This work is a contribution to knowledge on groundwater amphipod diversity and the systematics of the genus Niphargus close to the northern border of the distribution of this genus.

Hydrobiology doi: 10.3390/hydrobiology2040036

Authors: Emilie Arseneault Reinhard Pienitz Julie Carrière Émilie Saulnier-Talbot

Diatoms are reliable environmental bioindicators, but their application in coastal environments remains limited. Substrate has been put forward in the literature as an important variable in determining diatom habitat preferences. This study focuses on benthic diatom assemblages and their relationship with substrate specificity in a subarctic tidal environment, which could be relevant for environmental monitoring and management. A variety of substrates were sampled and physicochemical variables measured in various areas of the Bay of Sept-Îles region (northern Gulf of Saint-Lawrence, Canada). We recorded 606 species at 14 sites from 11 substrate types to determine the associations between diatoms and their habitats. Our results suggest that the variability of assemblages in the bay is the result of a combination of the identified variables (temperature, salinity, and total dissolved solids), explaining 26.5% of the variation, and other unmeasured variables (e.g., nutrients, wave action, and currents). Substrate was not identified as a significant variable in the statistical analyses. However, some common species in the surveyed assemblages appeared to show preferences for the substrates they colonized.

Hydrobiology doi: 10.3390/hydrobiology2040035

Authors: Bobby Leigh Víctor Aramayo Ursula Mendoza Federico Velazco Rainer Kiko Patricia Ayón Ernesto Fernández Michelle Graco

The total mass flux (TMF) of particulate organic matter (POM) is key for understanding the energetic transfer within the “biological pump” (i.e., involving the carbon cycle), reflecting a critical connection between the surface and the bottom. A fixed multi-sediment trap was installed at 30 m depth in Callao Bay, central Peru from March to December 2020. After recovery, samples were dried and weighed to calculate the TMF and pellet flux. The average TMF was 601.9 mg·m−2·day−1, with 70.2 and 860 mg·m−2·day−1 as the lowest and highest values during “normal conditions”. Zooplankton fecal pellets (ZFP) were found in ovoid (e.g., larvae) and cylindrical (e.g., adult copepods) shapes and their flux contribution to TMF was low, ranging from 0.17 to 85.59 mg·m−2·day−1. In contrast with ZFP, fish fecal pellets (FFP) were found in fragments with a cylindrical shape, and their contribution to the TMF was higher than ZFP, ranging from 1 to 92.56 mg·m−2·day−1. Mean sinking velocities were 4.63 ± 3.47 m·day−1 (ZFP) and 432.27 ± 294.26 m·day−1 (FFP). There is a considerable difference between the ZFP and FFP contributions to TMFs. We discuss the implications of these results regarding a still poorly understood process controlling the POM flux off the Peruvian coast.

Hydrobiology doi: 10.3390/hydrobiology2030034

Authors: John B. Tweedie Jaclyn M.H. Cockburn Paul V. Villard

Successful aquatic ecosystem conversation strategies depend on high-quality data from monitoring studies and improved habitat requirement knowledge. Remote Underwater Video (RUV) is a non-extractive alternative to capture-based techniques for studying and monitoring fish and is increasingly used in smaller channels. This study uses field observations made with waterproof Sony HDR-AS100V action cameras positioned in stream channels to determine species and population during various flow conditions across three sites within the Credit River Watershed, Ontario, Canada. Six fish species were identified, and individual fish lengths were estimated using the inverse square law to proportionally adjust size scales to fish positions relative to the camera. Successful identification and measurements were limited by turbidity, with camera placements in >6 NTU conditions (18% of all placements) resulting in at least one fish observed in the frame. With over 24 h of video recordings with 94 individual video clips, the optimal filming duration was determined to be 20–25 min. RUV surveys provide managers with useful monitoring data regarding fish present in an environment in a cost-effective and efficient manner. Additionally, as the method is largely non-invasive, RUV surveys are especially useful for studying fish behaviour, sensitive or endangered species, and working in difficult-to-access channels (e.g., shallow, faster flow).

Hydrobiology doi: 10.3390/hydrobiology2030033

Authors: Ashika Wijesinghe Mudalige Don Hiranya Jayasanka Senavirathna Takeshi Fujino

This study aimed to investigate the allelopathic effect of live Egeria densa Planch. and its aqueous extracts in inhibiting the cyanobacterium Microcystis aeruginosa (Kützing) Lemmermann through a possible growth inhibition pathway. Under coexistence, the presence of live E. densa reduced the growth of M. aeruginosa by 48% compared to when M. aeruginosa was alone. Consequently, we prepared two separate aqueous extracts with distilled water: one from E. densa plants collected from monocultures, and the other from E. densa plants collected from co-cultivation with M. aeruginosa. At a concentration of 0.5 g/L, both extracts successfully suppressed the growth of M. aeruginosa throughout the 5-day exposure period. The extracts obtained from E. densa plants grown in a combined culture with M. aeruginosa showed significant growth-inhibiting capabilities compared to the extracts obtained from E. densa monoculture (p < 0.05). They showed 22% more growth inhibition compared to cultures exposed to monoculture extracts at day 5, indicating that the production of allelochemicals in E. densa was induced during co-existence with cyanobacteria. However, the higher concentrations (2 and 4 g/L) of both extracts did not effectively exhibit a successful inhibitive ability, possibly due to the presence of high nutrient concentrations, specifically PO43−, which may be potentially suppressing the activity of allelochemicals. Further studies are recommended in identifying the specific allelochemicals and exploring their practical implementation in the field.

Hydrobiology doi: 10.3390/hydrobiology2030032

Authors: Joseph Eilers Kellie Vache Richard Grost

A project to mechanically remove an over-abundant population of cyprinids (Gila bicolor) was tested in a hydropower impoundment, Lemolo Lake (USA). The netting program removed 29.7 tons of fish (163 kg/ha) over a seven-year period that resulted in a reduction in the intensity and duration of cyanobacteria blooms. However, the suppression of the tui chub population apparently allowed for a residual population of kokanee (Oncorhynchus nerka) to proliferate. The resurgence of the kokanee, combined with the initiation of a rainbow trout stocking program, offset some of the gains in water quality achieved with the reduction of tui chub biomass. The dominant cyanobacterium present in Lemolo Lake transitioned to Gloeotrichia echinulata in 2013, but the majority of these colonies were apparently derived from an upstream lake. The changes in water quality from 2005–2013 were simulated for Lemolo Lake using the two-dimensional, hydrodynamic model, CE-QUAL-W2. The model reproduced many aspects of the water quality in Lemolo Lake and was used, in combination with a simple Bayesian model, to evaluate a number of potential scenarios for further improving water quality in the impoundment. Promoting a deeper drawdown of the hydroelectric impoundment during the winter to selectively increase entrainment of tui chub and kokanee, combined with continued netting targeted at tui chub, was judged to offer the greatest opportunity to manage the facility for water quality, fisheries and hydropower objectives.

Hydrobiology doi: 10.3390/hydrobiology2030031

Authors: Emma K. Millsap Nathan Huysman Dylan A. Gravenhof Mark J. Fincel Michael E. Barnes

Acid-sensitive predation tags have recently been introduced to fisheries management. The objective of this study was to ascertain the impact of these tags on juvenile rainbow trout Oncorhynchus mykiss physiology and growth after implantation. Twenty approximately 13 g rainbow trout were placed into each of five tanks, with ten surgically implanted with dummy acid-sensitive predation tags and ten control fish not subjected to surgical procedures. Glucose, hematocrit, tag-retention, survival, and growth metrics were collected for 30 days post-surgery. Four tagged fish died while no control fish died. Tag retention was 76%, with tags lost in weeks 2, 3, and 4. Control fish were significantly longer and gained significantly more weight at the end of the experiment. Hematocrit levels for the tagged fish dropped significantly over the course of the trial and were 30% lower than those of the untagged control fish at the end of 30 days. Glucose levels were highly variable for both treatments. The results of this study indicate the negative impacts of predation tagging on the physiology of juvenile rainbow trout. Results from predation field trials should be interpreted with caution because the tagged fish are likely at a competitive disadvantage compared to their untagged conspecifics.

Hydrobiology doi: 10.3390/hydrobiology2030030

Authors: David E. Bowles Weston H. Nowlin

Headwater streams and springs and their resident biotas are vulnerable to a broad range of anthropogenic stressors [...]

Hydrobiology doi: 10.3390/hydrobiology2030029

Authors: Achraf Guellaf Jalal Kassout Vladimiro Andrea Boselli Nard Bennas Majida El Alami Sanae Errochdi Kawtar Kettani

This study aimed to evaluate the effects of the Martil River rehabilitation project and recently constructed dam infrastructures to reduce flood risks and to promote local socio-economic development on the ecological integrity of the river. The assessment focused on changes in fluvial landforms over time and the evaluation of aquatic ecosystems based on six physicochemical parameters (temperature, pH, electrical conductivity, dissolved oxygen, biochemical oxygen demand, and chemical oxygen demand), morpho-hydrological variables (stream width, water depth, and current speed), habitat indices (QBR, IHF, and MQI), and macroinvertebrate assemblages of EPT, OCH, and Chironomidae (Diptera) at five stations from autumn 2015 to spring 2018 (prior to and during the rehabilitation actions). The results showed that the river rehabilitation project led to profound changes in Martil River’s ecosystem and water quality over time. Physicochemical and habitat measurements at the rehabilitated sites revealed a major change in macroinvertebrate communities due to changes in fluvial landforms in relation to flow-sediment regimes. As a result, some typical species of lentic habitats disappeared, while alien, opportunistic, and lotic species appeared.

Hydrobiology doi: 10.3390/hydrobiology2020028

Authors: Baharuddin Haslawati Md Ali Amatul-Samahah Mohammed Rizman-Idid Sekaran Muniandy

Pangasiids are an economically significant group of catfish, and many pangasiids are threatened in the wild from anthropogenic pressures, including increases in fishing pressure, habitat degradation, and improperly managed aquaculture practices. This study demonstrates the usage of DNA barcoding of the Cytochrome Oxidase subunit I (COI) gene as an identification tool in detecting potentially threatening invasive pangasiid species by establishing the diversity and phylogenetic relationship of Pangasiidae catfishes in Peninsular Malaysia. A neighbour-joining (NJ) dendrogram (Kimura-2-parameter model) generated five clades to represent distinct genera. Pangasius was further subdivided into two clades (Clade A: Pangasius bocourti-P. djambal and Clade B: P. nasutus-P. conchophilus). Given the marginal genetic divergence, indigenous and non-native species should be treated cautiously in allopatrically distributed species. The analysis used Automatic Barcode Gap Discovery (ABGD) and revealed barcode gaps between the intraspecific and interspecific distances. The sequences were partitioned into five groupings, corresponding with the species delineation based on the distribution of pairwise differences, which could not be differentiated using the NJ dendrogram. ABGD allows the recognition of one or two additional species using the recursive approach, but other taxonomic methods should be considered for a solid conclusion. DNA barcoding demonstrates the identification of closely related species, thus justifying its application towards the conservation of these fish.

Hydrobiology doi: 10.3390/hydrobiology2020027

Authors: Nathan M. Dugener Anthony D. Weinke Ian P. Stone Bopaiah A. Biddanda

Hypolimnetic hypoxia is expanding globally due to anthropogenic eutrophication and climate warming. Muskegon Lake, a Great Lakes estuary, experiences annually recurring hypoxia, impairing ecological, social, and economic benefits. Using high-frequency, time-series Muskegon Lake Observatory (MLO) data, we quantified the dynamics of hypoxia and developed a hypoxia severity index to estimate the spatiotemporal extent of hypoxia during 2011–2021. We also analyzed United States Geological Survey’s temperature and discharge data on the Muskegon River to explain the annual variability in the hypoxia severity index. Severe hypoxia occurred in warmer years with greater stratification, fewer wind mixing events, warmer winter river temperatures, and less winter and spring precipitation, as in 2012 and 2021. Conversely, milder hypoxia was prevalent in colder years with a later stratification onset, more mixing events, colder river temperatures, and more winter and spring precipitation, as in 2015 and 2019. Thus, knowledge of environmental conditions prior to the onset of stratification may be useful for predicting the potential severity of hypoxia for any year. While consistent multi-year trends in hypoxia were not discernible, our findings suggest that temperature and precipitation are major drivers of hypoxia and that as surface waters warm, it will lead to the further deoxygenation of Earth’s inland waters.

Hydrobiology doi: 10.3390/hydrobiology2020026

Authors: Aqib Hassan Ali Khan Rocío Barros

The presence of pharmaceuticals in the aquatic environment presents a challenge to modern science. The most significant impact this can induce is the emergence of antibiotic resistance, which can lead to a global health emergency. It is important to note that the impact of pharmaceuticals in the aquatic environment is not limited to antibiotic resistance. Pharmaceuticals can also affect the behaviour and reproductive systems of aquatic organisms, with cascading effects on entire ecosystems. Numerous studies have reported the emergence of pharmaceuticals due to the uncontrolled disposal of polluted domestic, agricultural, and industrial wastewater in water bodies. This work discusses the potential of pharmaceuticals that on one hand are highly important for mankind, yet their non-judicious usage and disposal induce equally intriguing and problematic conditions to the health of aquatic systems. Pathways through which pharmaceutics can make their way into water bodies are discussed. Furthermore, the risk imposed by pharmaceuticals on aquatic life is also elaborated. The possible and pragmatic remediation methods through which pharmaceutical products can be treated are also discussed. Emphasis is placed on the potential of phytoremediation and advanced oxidative process, and the factors affecting the efficacy of these remediation methods are discussed.

Hydrobiology doi: 10.3390/hydrobiology2020025

Authors: Hisayuki Komaki Yasuhiro Igarashi Tomohiko Tamura

Streptomyces sp. N11-50 was isolated from deep-sea water and found to produce diketopiperazine (DKP) compounds such as albonoursin and cyclo(Phe-Leu). This study aimed to reveal the potential to synthesize diverse nonribosomal peptide and polyketide compounds as the other secondary metabolites different from DKP after clarifying the taxonomic position. Strain N11-50 was identified as Streptomyces albus, as it showed 100% 16S rRNA gene sequence similarities and 95.5% DNA–DNA relatedness to S. albus NBRC 13014T. We annotated the nonribosomal peptide synthetase (NRPS) and polyketide synthase (PKS) gene clusters in the genome. Consequently, five NRPS, one hybrid PKS/NRPS, five type-I PKS and one type-II PKS gene clusters were observed, of which we predicted the products through bioinformatic analysis. These gene clusters were well conserved in already whole-genome sequence (WGS)-published strains belonging to S. albus. On the other hand, our taxonogenomic analysis revealed that three WGS-published S. albus strains were not S. albus. Two of the three should be classified as Streptomyces albidoflavus, and the remaining one was likely a new genomospecies. After reclassifying these appropriately, we demonstrated species-specific profiles of the NRPS and PKS gene clusters with little strain-level diversities.

Hydrobiology doi: 10.3390/hydrobiology2020024

Authors: Anthony J. Roux Sandra M. Clinton

As impervious cover increases with urban development, stream channels are degraded by increased stormwater runoff, which negatively impacts stream habitat quality and benthic macroinvertebrate diversity. We examined the relationship between stream habitat diversity and aquatic insect taxa and trait richness and diversity at the watershed scale in 30 streams, covering a gradient of stream habitat quality. We then quantified the relationship between taxa and trait richness and diversity and seven microhabitats at the reach scale in ten streams with high habitat quality. We found that both taxa richness and diversity declined at a greater rate than trait richness and diversity along an in-stream habitat diversity gradient. Taxa richness was positively correlated with pools, runs, backwater, leaf packs, and riffles, while trait richness was positively correlated with runs, small wood, and riffles. Taxa diversity was positively correlated with pools and leaf packs while trait diversity was positively correlated with runs, leaf packs, small wood, and riffles. An indicator species analysis revealed that specific taxa and traits were associated with specific microhabitats or combinations of microhabitats. By correlating the taxa in urban streams with specific microhabitats, we can better evaluate the success of stream restoration in restoring stream function and in stimulating benthic macroinvertebrate recovery.

Hydrobiology doi: 10.3390/hydrobiology2020023

Authors: Scott D. Longing Daniel D. Magoulick

The ability to colonize new habitat is essential for wild populations affected by disturbance or other forms of habitat change. For aquatic insects in small streams, overland flight is an important strategy for dispersal when barriers to in-stream migration exist and when populations are isolated in upland habitats. Two Ozark-endemic water beetles (Heterosternuta sulphuria and Heterosternuta phoebeae) have shown little overlap in distributions, with the former frequently occurring in small upland watersheds and the latter occurring in aquatic habitats farther downstream in larger watersheds. Because H. sulphuria has been associated with perennial aquatic habitats, we hypothesized that H. sulphuria individuals could exhibit low capacity for flight, thereby affecting population distributions over time. Laboratory flight observations showed that zero individuals of H. sulphuria flew (n = 67), whereas 17 of 76 individuals of H. phoebeae were observed to fly. Stream habitat drying experiments provided further evidence of the weak capacity for flight and overland migration of H. sulphuria, with low probabilities of survivorship in microhabitats exposed to drying. Weak flight capacity and apparent intolerance to habitat drying have important implications for the evolutionary history and conservation of H. sulphuria in small Ozark streams exposed to variable flow regimes and stream margins vulnerable to disturbances.

Hydrobiology doi: 10.3390/hydrobiology2020022

Authors: Silvia Chemello Isabel Sousa Pinto Tania R. Pereira

Kelp forests are disappearing worldwide due to climate change and human stressors, highlighting the need for active interventions. A new restoration approach, “green gravel”, has been shown to be a potentially effective tool to restore endangered kelp forests. However, green gravel is still a novel technique that needs better experimentation and optimisation at all process stages. Contamination by other algal species is one of the critical factors in early-stage green gravel production because their overgrowth can lead to the loss of the seeded material. In this study, we assessed the effect of light intensity on kelp growth and on the coverage of contaminating algae on green gravel. Our results show that under high lights, kelps displayed faster growth (recruits on average more than three times the size and covering a six-times-larger area in high light intensity than in low light), but there was also a higher percentage of contaminating algae. In contrast, the green gravel cultivated under low lights showed almost no signs of algal contamination, but the area occupied by kelps and the length of the lamina were dramatically lower. Due to the cultivation conditions, opportunistic species can grow fast. This advantage is expected to disappear once the green gravel is deployed. To obtain cleaner cultures and to avoid the risk of losing the cultivated material, we would advise starting rearing under lower light intensity to reduce the risk of contamination but ensure kelp growth and then increasing the light intensity to boost it. Clear and appropriate protocols are absolutely necessary to minimise production costs and times and for the scaling-up of future attempts at marine forest restoration.

Hydrobiology doi: 10.3390/hydrobiology2020021

Authors: Nalok Dutta Pritha Kundu Jonathan Tian En Lee Sayan Bhattacharya

Algal biomass is a prospective feedstock for the eco-sustainable production of many different products with added value, such as meals, feeds, and fuels. The remaining biomass from the algae can be used as raw material and can be transformed into useful secondary products after the important macromolecules have been removed. By optimizing algal biomass hydrolysate utilizing microbial fermentation, several studies demonstrated the generation of bioenergy (bioalcohol, biogas, and biohydrogen) and biochemicals (organic acids and biopolymers). Since the harvest and maintenance of sustainable algal cultivation incur considerable energy and economical prowess, developing products from algae remains a challenge to be countered in commercial applications. This is a typical bottleneck issue when processing algae for fuels or chemicals at the pilot scale. Implementation of integrated algae biorefinery methods can substantially reduce the cost of production and energy consumption. An algae-based green economy can be financially more viable and utilizable, especially for countries with weaker economies. This review’s goal is to examine the implementation of integrated biorefineries for the recovery of bioproducts generated from algae and potential applications. In this context, the life cycle analysis and business elements of a unified algal biorefinery are also addressed.

Hydrobiology doi: 10.3390/hydrobiology2020020

Authors: Chryssanthi Antoniadou Martha Pantelidou Maria Skoularikou Chariton Charles Chintiroglou

Coral mortality is a global phenomenon of increasing magnitude, correlated with climate change. Prolonged marine heatwaves have particularly affected the north Aegean Sea in summer 2021, threatening shallow-water stony corals, such as Balanophyllia europaea and Cladocora caespitosa. To assess their population status, ten coastal, rocky-bottom stations dispersed in Natura 2000 sites of Chalkidiki (north Aegean) were surveyed using non-destructive techniques in autumn 2021. At each station, corals’ abundance was estimated in situ, by counting the number of B. europaea polyps within randomly placed 50 × 50 cm quadrats, and the number of C. caespitosa colonies along three replicate belt transects 1 × 10 m. The status of corals was qualitatively assigned as healthy, bleached (partially or complete), or in necrosis (partial or complete). B. europaea was found in 80% of stations; in total, 58.17% of the coral specimens were affected by necrosis. C. caespitosa was found in 30% of stations; in total, 27.49% of the coral colonies were partially bleached and 11.32% in necrosis. Another nine sessile invertebrates (sponges, bivalves, and ascidians) were observed in necrosis. These results highlight the need to establish monitoring programs on vulnerable sessile invertebrate populations along the Aegean Sea to assess climate change impacts.

Hydrobiology doi: 10.3390/hydrobiology2020019

Authors: Paula Alvarez Maria Korta Dorleta Garcia Guillermo Boyra

Maurolicus muelleri is a significant component of the marine ecosystem and has the potential to be a valuable fishery resource. However, in the Bay of Biscay, its primary biological traits remain unclear. This study presents data on the length distribution, age, growth, maturity ogive, spawning season, batch fecundity, and sex ratio for Maurolicus muelleri captured in the Bay of Biscay. The results showed that in spring, the adult spawners (ages of 1 and 2) were dominant in the catches, while in September, immature juveniles (age of 0) born in spring were mostly found. Using standard lengths as a basis, 50% of the fish were mature at 34.1 mm (both sexes combined), and the sex ratio, male to female, was 0.44:0.56. The proportion of females increased with length, and a 1:1 sex ratio was predicted at a standard length of 41.5 mm. The spawning season was allocated to at least between March and September, with a likely peak in May. The batch fecundity ranged from 114 to 919 oocytes/female, and increased with the weight and length of females. The results allowed us to interpret a life history strategy for this species, i.e., a high fecundity for females, which mostly participate in one or two reproductive seasons. Therefore, any possible exploitation of age 0 fish prior to spawning could lead to a decrease in the population from which recovery could be slow.

Hydrobiology doi: 10.3390/hydrobiology2010018

Authors: Wesley X. Torres-Perez Omar Perez-Reyes

Most of the human population lives in cities, and understanding their impact on freshwater environments is essential. Streams in cities face many environmental challenges that have been described in the concept of Urban Stream Syndrome. This concept illustrates urban streams’ biological, hydrological, chemical, and physical stressors. In tropical streams, these stressors impact shrimp, fish, insects, and other macroinvertebrates that inhabit the freshwater ecosystems. Freshwater shrimp are vulnerable to urban activities, physical, chemical, and ecological impacts. For this reason, these organisms have been used as biological indicators of stream health in the tropics. The shredder shrimp Xiphocaris elongata plays a fundamental role in the organic matter process and decomposition. The objectives of this study were to characterize the population of X. elongata and to identify differences in the abundance of X. elongata between urban and forest streams. Our results showed that highly urbanized areas have a significantly lower abundance of the shredder shrimp X. elongata than medium or low urban reach in the urban and forested watersheds. This study also showed that physicochemical and geomorphological variables are important environmental factors that influence the abundance of X. elongata in Puerto Rican streams.

Hydrobiology doi: 10.3390/hydrobiology2010017

Authors: Cameron R. Cheri Debra S. Finn

The Odonata are not typically regarded as informative taxa for stream bioassessment in North America compared to other insects, particularly when monitoring the ecological impacts of organic pollution. However, we hypothesized that stream-dwelling odonates are useful bioindicators of riparian conditions because vegetation associated with streams is used for oviposition and establishing breeding territories and is likely a cue for a suitable nymphal habitat. We sampled odonates from multiple microhabitats and all macroinvertebrates from riffle habitat in 12 Ozark Highlands (USA) spring streams along a gradient of riparian conditions. We also measured a standard suite of physical and chemical variables in each stream. We compared various aspects of the odonate and riffle macroinvertebrate assemblages among sites to evaluate sensitivity to variables associated with riparian structure compared to the other physical and chemical variables measured. The odonates were strongly associated with riparian-specific variables, while riffle macroinvertebrates were associated with riparian variables to a lesser degree. The additional environmental variables explained minimal variation in either assemblage. Overall, our results suggest that Odonata alone could be useful for biomonitoring associated with riparian structure around Ozark spring streams. The sensitivity of odonates to riparian conditions in other Nearctic regions should be further studied to identify regional and species-specific differences.

Hydrobiology doi: 10.3390/hydrobiology2010016

Authors: Alba Magali Luna-Luna Caleb Califre Martins Carlos Lara Atilano Contreras-Ramos

Aquatic beetle diversity was compared between three study sites in the state of Tlaxcala, central Mexico: Stream 1 (San Ambrosio), stream 2 (San Tadeo), and a lake (Acuitlapilco). Sampling took place bimonthly during an annual cycle. A total of 2968 specimens were obtained, which were grouped into twenty three species, fifteen genera, and six families (Elmidae, Dryopidae, Dytiscidae, Gyrinidae, Haliplidae, and Hydrophilidae). Stream 2 showed the highest values of abundance (1570 individuals), while stream 1 had the highest richness (18 species). Abundance values showed two peaks each in rainy and dry seasons. The proportion of rare and dominant species was similar in all study sites. Based on species accumulation curves, the maximum estimated number of species has not been achieved in either of the three sites. Regarding alpha diversity (effective number of species), stream 1 presented the highest zero-order diversity estimated with 18.5 species. Regarding beta diversity, lotic systems (streams 1 and 2) presented a similarity of 75%. Finally, regarding the trophic structure of the adult aquatic beetle community, herbivores, predators, and decomposers were most representative in this study. Based on our results, Tlaxcala probably holds a significant diversity of aquatic beetles. This appears to indicate that species composition in geographic areas, regardless of their relatively small size, is worth documenting and, of course, preserving.

Hydrobiology doi: 10.3390/hydrobiology2010015

Authors: Aleko Miho Jani Marka Zenel Krasniqi

There are many important protected areas in the Western Balkan region, which are shared between Albania, Montenegro, Kosovo, North Macedonia, and Greece. These areas have special importance based on their species density (mosses and higher plants) per surface unit. These transboundary ecosystems, which include mountainous massifs, lakes, and rivers, are biodiversity hotspots for the whole of Europe. Species and habitat densities are high compared to other countries in Southeast Europe. However, political borders fragment properly across two or three countries, which often have different approaches and rules for nature protection and the use of resources. Hence, in this short opinion piece, we stress common and cooperative transboundary protection and management in these countries. Furthermore, the European Union’s policy towards the Western Balkan countries in the Stabilization and Association Process (SAP), with the goal of their eventual EU membership, is crucial. Therefore, our appeal is addressed not only to the respective local communities and national governments but also to the European Commission and related EU institutions. We stress the importance of these cross-border ecosystems in the integration process.

Hydrobiology doi: 10.3390/hydrobiology2010014

Authors: Md Rakibul Islam Momota Yeasmin Sultana Sadia Md Sadek Ali Ahmed Redwan Haque Vikash Chandra Roy

Peoples can readily and affordably obtain small indigenous fish species (SIS), with a maximum length of 25 cm, that can be found in niches in small bodies of water (such as canals, ponds, wetlands, streams, etc.). SIS contribute valuable and significant macro- and micronutrients in Bangladesh. SIS are excellent suppliers of vitamins and minerals. The main micronutrients are copper, iodine, iron, selenium, chromium, and zinc, which can help prevent mineral deficiency and enzymatic response in the human body. SIS, such as the mola (Amblypharyngodon mola), cotio (Osteobrama cotio), darkina (Esomus danricus), etc., are easily digestible by the human gut. Nutrients of these fish are quickly accessible by the intestine. These fish are comparatively cheap and easy to capture and promote the presence of particular vitamins in SIS, including A, D, E, and K, as well as vitamin B components. This review paper focuses on the SIS nutritional contribution and their efficacy of preventing malnutrition in developing countries such as Bangladesh and the whole world.

Hydrobiology doi: 10.3390/hydrobiology2010013

Authors: Brianna Annaratone Camryn Larson Clay Prater Ashley Dowling Daniel D. Magoulick Michelle A. Evans-White

Stoneflies are a globally threatened aquatic insect order. In Arkansas, a diverse group of winter stonefly (Capniidae: Allocapnia) have not been surveyed since the 1980s, likely because species-level identification requires the rarely-collected adult form. Allocapnia mohri, a regional endemic, was previously commonly found in mountainous, intermittent streams from the Ouachita Mountains ecoregion north to the Ozark Highlands, but no species distributional models including land use or climate variables exist to our knowledge. We collected adults from 71 stream reaches from the historic Arkansas range from November to April 2020 and 2021. We modeled distributions using random forest (RF) models populated with landscape, climate, and both data to determine which were most predictive of species presence. Correlations between landscape or climate variables and presence were examined using multiple logistic regression. The landscape RF models performed better than the climate or landscape + climate RF models. A. mohri presence sites tended to have a greater elevation, a lower mean July temperature, and a greater percentage of very slow infiltration soils in the watershed, compared to absence sites. A. mohri was absent at the Ouachita Mountains sites and may be experiencing a range contraction or migration northward.

Hydrobiology doi: 10.3390/hydrobiology2010012

Authors: Nuno Castro Tadeu J. Pereira André Costa Joana Sertório António Fernandes Maria J. Tavares João J. Castro

Intensive and regular fishing occurs in the marine area of the natural park “Parque Natural do Sudoeste Alentejano e Costa Vicentina” (PNSACV; SW coast of continental Portugal). In 2011, this area became a marine park with different protection levels (total, partial, and complementary). We assessed in 2011 and 2012 if partial protection (PP) in Marine Protected Areas (MPAs) changed the taxa richness, abundance, size, and community composition of cryptic and non-cryptic fishes. We also determined if these effects were observed outside PP areas in adjacent control areas. Underwater visual censuses (UVC) of cryptic and non-cryptic fish species were conducted in rocky subtidal habitats (~10 m deep) with band transects (25 × 2 m and 25 × 4 m, respectively) to determine abundance and size classes. The northern half of the PNSACV was sampled at a scale of tens (site—two sites per area; 4–6 transects per site) and hundreds (area) of meters. Two PP and six control areas were sampled. The homogeneity and abundance of bottom habitat types were assessed at each site. Effects of protection were not detected in the community structure or univariate analyses (i.e., taxa richness and total abundance) of non-cryptic and cryptic fishes. The early phase of the MPAs may have driven the lack of significant protection effects. Replication in time within a monitoring program is recommended to assess these conservation measures’ ecological effects.

Hydrobiology doi: 10.3390/hydrobiology2010011

Authors: Rayhana Akter Nazmul Hasan Farhadur Reza Md. Asaduzzaman Kohinoor Begum Mashura Shammi

The aim of this review paper is to identify the production trends of shrimp and rice farming systems and associated hydrobiological parameters such as salinity in the coastal districts of Bangladesh. An intensive literature review has been conducted to explore salt stress-driven land use change, crop production, and changing ecosystem hydrobiology to adapt climate change impact from 2012–2022. The results indicate that a gradual extension of salt-driven land use and land cover (LULC) change has stressed agricultural production to a greater extent from 1973 to 2022 due to the high level of salinity. The unplanned expansion of shrimp culture is creating adverse consequences for the coastal ecosystem. Some suggestions have been proposed by analysing the mechanisms of crops’ response to salt stress, including several physiological, biochemical, and molecular bases to mitigate the adverse effects of salinity on agricultural production. Alternatively, prawn, shrimp, and crab have similar or slightly higher economic outputs, except for the crop-based agricultural system, which is highly affected by salinity rise. However, due to low input costs, low maintenance, and less environmental impact, farmers are shifting towards crab fattening and thus changing the hydrobiology of coastal land use and land cover.

Hydrobiology doi: 10.3390/hydrobiology2010010

Authors: Hisayuki Komaki Tomohiko Tamura Yasuhiro Igarashi

Two Streptomyces strains, named N11-26 and DC10-5, were isolated from deep-sea and non-photosynthetic stony coral, respectively. Strain N11-26 produces lobophorin C and divergolides, which are antimicrobial substances. This study aimed to classify these strains and reveal their cryptic potential to synthesize other secondary metabolites, such as polyketides and nonribosomal peptides. Strains N11-26 and DC10-5 showed 16S rRNA gene sequence similarities of 100% and 99.9% to Streptomyces olivaceus NRRL B-3009T, respectively. By digital DNA–DNA hybridization using whole-genome sequences, these strains were classified as Streptomyces olivaceus. Strain N11-26 was closer to the type strain of S. olivaceus than strain DC10-5 and possessed 17 clusters of polyketide synthase (PKS) and/or nonribosomal peptide synthetases (NRPS) genes, whereas strain DC10-5 harbored 19 clusters. Putative products by these gene clusters were predicted by bioinformatic analyses. Although 15 clusters were conserved between the two strains, two and four clusters were specific in strains N11-26 and DC10-5, respectively. This represents a diversity of potential polyketide and nonribosomal peptide compounds between strains of S. olivaceus. To the best of our knowledge, this is the first report annotating all the PKS and NRPS gene clusters in S. olivaceus strains with their putative products to provide useful information for genome mining.

Hydrobiology doi: 10.3390/hydrobiology2010009

Authors: Hydrobiology Editorial Office Hydrobiology Editorial Office

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