Sample |
Chao1 |
Evenness |
Faith PD |
Good's Coverage |
Observed OTUs |
Shannon |
Simpson |
T1 |
245.188 |
0.293 |
8.595 |
0.988 |
107 |
1.976 |
0.615 |
T10 |
856.000 |
0.332 |
59.876 |
0.973 |
210 |
2.563 |
0.712 |
T11 |
251.176 |
0.164 |
15.850 |
0.987 |
105 |
1.098 |
0.356 |
T12 |
387.056 |
0.205 |
38.213 |
0.983 |
139 |
1.460 |
0.428 |
T13 |
437.667 |
0.169 |
31.252 |
0.986 |
104 |
1.130 |
0.371 |
T14 |
1,126.048 |
0.330 |
22.575 |
0.966 |
262 |
2.649 |
0.635 |
T15 |
471.176 |
0.198 |
32.002 |
0.981 |
150 |
1.435 |
0.426 |
T16 |
439.545 |
0.186 |
27.709 |
0.985 |
115 |
1.276 |
0.412 |
T2 |
274.250 |
0.174 |
6.400 |
0.993 |
59 |
1.024 |
0.371 |
T3 |
366.714 |
0.301 |
14.459 |
0.983 |
145 |
2.161 |
0.639 |
T5 |
329.043 |
0.276 |
10.349 |
0.983 |
139 |
1.966 |
0.612 |
T6 |
313.500 |
0.185 |
11.085 |
0.992 |
66 |
1.119 |
0.406 |
T7 |
309.250 |
0.178 |
13.425 |
0.989 |
88 |
1.148 |
0.367 |
T9 |
538.909 |
0.352 |
11.487 |
0.983 |
133 |
2.487 |
0.736 |
- ACE(Abundance-based Coverage Estimator)
- based on the concept of "sample coverage"
- Chao1
- how many species are represented by only one individual in the sample (singletons), and how many species are represented by exactly two individuals (doubletons)
- Evenness
- measure of the relative abundance of the different species making up the richness of an area
- Faith_PD
- measure of biodiversity, based on phylogeny (the tree of life)
- Good's Coverage
- estimating what percent of the total species is represented in a sample
- Observed_OTUs
- measure of community richness
- Shannon
- accounting for both abundance and evenness of the species present.
- Simpson
- measure of the probability that two individuals randomly selected from a sample will belong to the same species