In Silico and In Vitro Evaluation of the Antimicrobial and Antioxidant Potential of Mentha × smithiana R. GRAHAM Essential Oil from Western Romania

This study was conducted to identify the volatile compounds of Mentha × smithiana essential oil (MSEO) and evaluate its antioxidant and antibacterial potential. The essential oil (EO) content was assessed by gas chromatography–mass spectrometry (GC-MS). Carvone (55.71%), limonene (18.83%), trans-carveol (3.54%), cis-carveol (2.72%), beta-bourbonene (1.94%), and caryophyllene oxide (1.59%) were the main identified compounds. The MSEO displayed broad-spectrum antibacterial effects and was also found to be the most effective antifungal agent against Candida albicans and Candida parapsilosis. The antioxidant activity of MSEO was tested against cold-pressed sunflower oil by peroxide, thiobarbituric acid, 1,1-diphenyl-2-picrylhydrazyl radical (DPPH), and β-carotene/linoleic acid bleaching methods. The EO showed strong antioxidant effects as reflected by IC50 values of 0.83 ± 0.01 mg/mL and relative antioxidative activity of 87.32 ± 0.03% in DPPH and β-carotene/linoleic acid bleaching assays, respectively. Moreover, in the first 8 days of the incubation period, the inhibition of primary and secondary oxidation compounds induced by the MSEO (0.3 mg/mL) was significantly stronger (p < 0.05) than that of butylated hydroxyanisole. In silico molecular docking studies were conducted to highlight the underlying antimicrobial mechanism as well as the in vitro antioxidant potential. Recorded data showed that the antimicrobial activity of MSEO compounds could be exerted through the D-Alanine-d-alanine ligase (DDl) inhibition and may be attributed to a cumulative effect. The most active compounds are minor components of the MSEO. Docking results also revealed that several mint EO components could exert their in vitro antioxidant activity by employing xanthine oxidase inhibition. Consequently, MSEO could be a new natural source of antioxidants and antiseptics, with potential applications in the food and pharmaceutical industries as an alternative to the utilization of synthetic additives.


Introduction
The consumption of minimally processed and additive-free foods has increased in recent decades, demanding the replacement of the traditional preservation methods by the food industry [1]. Different emerging technologies (e.g., high-pressure processing, pulsed electric field, modified atmosphere packaging) have been studied in order to prolong the shelf life of foodstuff [2], including the use of natural extracts and essential oils (EOs). EOs are aromatic, volatile, and complex liquids extracted from different plant parts (flowers, leaves, seeds, fruits, bark, roots) [3]. These are secondary metabolites mainly involved in plants' defensive mechanisms and usually contain monoterpenes, sesquiterpene, and phenolic compounds, as well as oxygenated or non-oxygenated derivatives [4]. Aside from their multiple applications in the cosmetic, pharmaceutical, and food industry, these are also recognized for their biological properties (antimicrobial, antioxidant, carminative, antiviral, anti-inflammation, analgesic, antispasmodic, etc.) [5][6][7][8].
Romanian flora includes about 25 species and several varieties and subspecies from the genus Mentha [12]. The aerial parts (e.g., leaves, flowers, and stems) of Mentha species have been applied for centuries in folk medicine to treat multiple dysfunctions of the gastrointestinal tract or cholecystopathies [12][13][14]. Several Mentha species, such as spearmint (Mentha spicata), peppermint (M. × piperita), and corn mint (M. canadensis) are extensively utilized as industrial crops for the purpose of EO production [11]. These oils have many applications as flavoring agents in chewing gums, beverages, bakery products, cosmetics, oral hygiene products, and pharmaceuticals [11,15]. The plants belonging to the Mentha species are mentioned as promising free radical scavengers, as well as primary antioxidants that can react with free radicals and reduce the attack of reactive oxygen species on biological and food systems [16][17][18]. Additionally, multiple investigations reported the antimicrobial and antifungal properties of the Mentha species EOs and/or extracts against pathogenic bacteria and fungi [3,[19][20][21][22]. Nevertheless, some members of the Mentha genus remain partly explored, such as Mentha × smithiana R. GRAHAM, an accepted hybrid of M. aquatica × M. arvensis × M. spicata [23]. To the best of our knowledge, no data have been reported yet on the antioxidant properties of Mentha × smithiana essential oil (MSEO).
Therefore, this research investigated: (i) the chemical composition; (ii) the antimicrobial and antioxidant activities of MSEO; and (iii) the mechanisms of interaction between MSEO chemical compounds and target proteins associated with antibacterial effects and intracellular antioxidant mechanisms, thus aiming for its possible recommendation in food and pharmaceutic industries as a green preservative.

Essential Oil Extraction
The aerial parts (flowers, leaves, and stems) of M. smithiana, at the full flowering phenological stage, were manually harvested from the experimental fields of Banat's University of Agricultural Sciences and Veterinary Medicine "King Michael I of Romania" from Timisoara (BUASVM Timisoara) in June 2019. A voucher specimen (VSNH.BUASTM-90/1) was collected, identified, and deposited in the BUASVM Timisoara Herbarium. MSEO was obtained by steam distillation, using a modified Clevenger apparatus (Corning Life Sciences, Kennebunk, ME, USA) [24], with a cooled oil collector to prevent the generation of artefacts during isolation [25]. A slightly yellow oil with a characteristic odor and sharp taste was obtained. After decantation, the water traces were removed by using anhydrous sodium sulphate, and the product was deposited at −18 • C until use.

Gas Chromatography-Mass Spectrometry
The MSEO was diluted 1:1000 in hexane and vortexed before injection. In total, 1 µL of the prepared sample was injected in splitless mode in a HP6890 Gas-Chromatograph coupled with a HP5973 Mass Spectrometer (Agilent Technologies, Santa Clara, CA, USA). The injected sample was run into a Bruker Br-5MS capillary column (30 m × 0.25 mm id × 0.25 µm, Bruker, Billerica, MA, USA) with helium flow of 1 mL/minute. The oven temperature ranged from 50 • C to 300 • C with 6 • C/minute rate and a final hold for 5 min; the solvent delay was 3 min. The mass spectrometer had the source set at 230 • C, the MS Quad at 150 • C, and ionization energy at 70 eV. The compounds' mass values were scanned between 50 and 550 amu. The identification of the MSEO components was based on retention indices (RIs), calculated by means of a C 8 -C 20 alkane standard mixture calibration curve and subsequently compared with Adams indices [26], computer matching with the NIST0.2 mass spectra library (USA National Institute of Science and Technology software, NIST, Gaithersburg, MD, USA), and by co-injection with reference samples (limonene and carvone).

Antioxidant Activity
In order to evaluate the antioxidant activity of the MSEO, cold-pressed sunflower oil purchased from the local market was used (1.92 meq·kg −1 initial peroxide value). This oil is frequently used in the South-East European countries' cuisines [27] and is somewhat unstable due to the rich content in fatty acids [28]. The MSEO antioxidant activity was studied by peroxide, thiobarbituric acid, 1,1-diphenyl-2-picrylhydrazyl radical (DPPH), and β-carotene/linoleic acid bleaching tests, respectively.

Sample Preparation
Samples were prepared by adding 0.1 mg/mL and 0.2 mg/mL, 0.3 mg/mL, respectively, of MSEO to 10 mL volume of cold-pressed sunflower oil. Additionally, 0.2 mg/mL of BHA and BHT, the maxim amount of these synthetic additives in fats and oils according to the European Union (EU) food legislation [29], were added in 10 mL cold-pressed sunflower oil. A control sample without any additive was prepared under similar conditions.

Thiobarbituric Acid Value
The thiobarbituric acid (TBA) test, as described by Jianu et al. [31], was adopted; briefly, 2 g of each sample, benzene (5 mL), and 0.67% aqueous thiobarbituric acid solution (4 mL) were mixed and continuously homogenized for 1 h with a mechanical shaker. Subsequently, the supernatant was maintained on a hot water bath for 45 min. After cooling, the solutions were spectrophotometrically assessed at 540 nm (Specord 210 spectrophotometer, Analytik Jena, Jena, Germany). The TBA value (µg malondialdehyde g −1 ) was measured every 4 days, and all the measurements were performed in triplicate. The scavenging effect of the MSEO on the DPPH radical was analyzed by using the adapted Brand-Williams method [32][33][34]. In total, 10 µL methanolic DPPH solution (1 mg/mL) was mixed with each analyzed sample (100 µL) at different serial concentrations (1.5 to 0.093 mg/mL). The absorbances were measured at 515 nm (Tecan i-control, 1.10.4.0 infinite 200Pro) after 30 min of incubation (in the dark at room temperature). BHT and BHA served as positive controls, while methanol was used as a negative control. The inhibition of free DPPH radical (I%) was calculated according to the following equation: I% = (A methanol − A sample /A methanol ) × 100, where: A methanol is the absorbance of the methanol and A sample is the absorbance of the tested oil. BioDataFit 1.02 program (Chang Broscience Inc., Fremont, CA, USA) was used to calculate the IC 50 . All measurements were performed in triplicate.

β-Carotene Bleaching Assay
The analysis was conducted using the method described by Oke et al. [35], with some modifications [31]. Briefly, a β-carotene (0.5 mg) stock solution was prepared in a mixture of chloroform (1 mL), Tween 40 (200 mg), and linoleic acid (25 µL). The chloroform was removed under vacuum at 40 • C for 5 min by using a rotary evaporator (Heidolph, Schwabach, Germany). The residue was treated with 3% hydrogen peroxydeaqueous solution (100 mL) and stirred vigorously (2-3 min) to obtain an emulsion. Aliquots of the emulsion (2.5 mL) were added in the test tubes containing MSEO (350 µL); BHT was used as a positive control. All tubes were kept for 48 h at room temperature before measuring the absorbances at 490 nm. All measurements were performed in triplicate.

Antibacterial Activity Assay
The MSEO antimicrobial activity was assessed according to the Clinical and Laboratory Standards Institute standard [37], with some modifications [3]. A bacterial suspension of each tested strain was prepared to a concentration of 0.5 MacFarland, approximatively 1-2 × 10 8 colony forming units (CFU)/mL for bacterial strains and 1-5 × 10 6 CFU/mL for Candida strains. The Mueller-Hinton (MH) agar or Mueller-Hinton agar-fastidious organisms' agar (MHF) supplemented with defibrinated horse blood and β-nicotinamide adenine dinucleotide (bioMérieux, Marcy-l'Étoile, France) was inoculated with 0.1 mL standardized suspension. In total, 10 µL MSEO was added to a 6 mm diameter blank paper disk (BioMaxima, Lublin, Poland) and deposited on the MH or MHF plates' surface, respectively, previously inoculated with microbial strains. The plates were incubated for 24 h at 35-37 • C (for bacterial strains) and for 48 h at 28 • C (for yeasts), after which the diameters of the inhibitory halos (in millimeters) formed around the paper disk were measured. Gentamycin (10 µg/disk) and fluconazole (25 µg/disk) disks were used as a positive control for bacteria and yeast (BioMaxima, Lublin, Poland), respectively. Dimethylsulphoxide (DMSO) was used as the negative control. All analyses were carried out in triplicate for each microbial strain. MSEO strongly inhibits the growth of all tested bacterial and yeast strains; minimum inhibitory concentration (MIC) values were determined by applying microdilution in broth assay according to the Clinical and Laboratory Standards Institute (CLSI) guidelines M07-A10 for bacteria [38] and European Committee on Antimicrobial Susceptibility Testing (EUCAST) definitive document E.Def 7.2 for yeasts [39]. Standardized inoculum (0.5 Mc-Farland meaning 10 8 CFU/mL for bacterial strains and 2 × 10 6 CFU/mL for fungal strains) was prepared by dilution, resulting in 1-5 × 10 5 CFU/mL microbial suspension. Successive dilutions of MSEO in DMSO were prepared in order to achieve various concentrations (400, 200, 100, 50, 25, 12.5 mg/mL). In total, 0.1 mL of each MSEO dilution was treated with 0.4 mL MH or MHF broth and 0.5 mL microbial suspension, with a final microbial inoculum of approximately 0.5 × 10 5 CFU/mL. After 24 h of incubation at 35-37 • C (for bacteria) and 28 • C (for yeasts), the MIC (the lowest concentration without visible growth) was assessed. As a control, 0.1 mL DMSO was added in a tube with 0.5 mL microbial suspension and 0.4 mL MH or MHF broth for bacteria and fungi, respectively. All analyses were carried out in triplicate for each microbial strain.

Minimum Bactericidal Concentration (MBC) and Minimum Fungicidal Concentration (MFC)
The minimum bactericidal concentration (MBC) and minimum fungicidal concentration (MFC) were determined according to the method described by Danciu et al. and Jianu et al. [40,41], with some modifications. In total, 1 µL culture from each test tube at MIC (with no visible growth) was inoculated using a loop (NuovaAptaca SRL, Canelli, Italy) on Columbia agar supplemented with 5% blood and maintained for 24 h at 37 • C for bacteria or on Sabouraud supplemented with chloramphenicol medium and maintained for 48 h at 28 • C for the yeast. The MBC/MFC was established as the lowest EO concentration, which killed 99.5% of the inoculated microorganisms [42,43]. All analyses were carried out in triplicate for each microbial strain.

In Silico Molecular Docking
Corresponding 3D structures of the protein targets (Table 1) were obtained from the RCSB Protein Data Bank [44]. The protein structures were prepared as suitable targets, using the Autodock Tools (version 1.5.6, The Scripps Research Institute, La Jolla, CA, USA). Water molecules, undesired protein chains, metal atoms, and the co-crystalized ligands were removed from the protein structure, after which polar hydrogen atoms and Gesteiger charges were added. The target was saved as the required file format (pdbqt). Ligand molecules corresponding to the 39 MSEO components were drawn as mol files using Biovia Draw (Dassault Systems Biovia, San Diego, CA, USA) and were subsequently converted into 3D structures using PyRx's Open Babel module. Structure geometry optimization was also achieved with Open Babel, using the ghemical force field. Compound docking was performed with the GUI software PyRx, using Autodock Vina's scoring function [45]. In order to validate the docking method, the co-crystalized ligands were previously removed from their respective proteins, prepared as suitable pdbqt files and re-docked in their original binding sites. The predicted docking pose was compared with the experimental cocrystallized binding pose. This docking validation was performed for all protein structures. The grid box, which delimitates the search space, was defined in terms of coordinates and size (Table 1) to best fit the active binding site. Data results for docked molecules were recorded as free binding energy values (∆G, kcal/mol). Ligand-protein binding features were analyzed using Accelerys Discovery Studio 4.1 (Dassault Systems Biovia).

Statistical Analysis
Statistical analysis was carried out using the SPSSv25 software (SPSS Inc., Chicago, IL, USA). In the preliminary analysis, the Shapiro-Wilk test was performed to test the normality of data for each incubation period (day 0, day 4, day 8, day 12, day 16, day 20, and day 24). Due to the non-normally found in our data, nonparametric tests were further applied. As an overall omnibus test, Kruskal-Wallis was employed to find significant differences in the case of independent samples, BHA, BHT, and three concentrations of MSEO (0.1, 0.2, and 0.3 mg/mL, respectively). The Mann-Whitney test was performed to make multiple pairwise comparisons to detect statistically significant differences between specific samples. All the above-mentioned tests were applied for each level of the incubation period. The Friedman test for dependent samples and repeated measurements was performed to analyze the time evolution over the incubation period levels. Each statistical testing procedure was applied distinctively for peroxide and TBA values. The Tukey test assessed differences among values obtained from three replicates performed in the antimicrobial analysis. For all the testing mentioned above, differences were considered significant when p < 0.05.

MSEO Chemical Composition
The steam distillation of fresh aerial parts of M. smithiana gave a slightly yellow EO, with an average calculated yield of 1.24 ± 0.03% (expressed as mean ± SD). The chemical composition is shown in Table 2, according to their elution order on a Br-5MS capillary column.  [23]. The yield and compositional variation of the EOs may be due to the harvesting time at different stage, storage, and extraction methods [47] and also depends on the physiological and environmental conditions (e.g., seasonal and geographical location, soil composition, climate) [11,48].

Assessment of Antioxidant Activity
The assessment of the MSEO antioxidant activity has been conducted on cold-pressed sunflower oil. Figure 1A shows the changes in PVs of the investigated cold-pressed sunflower oil samples. The PV measures the total peroxide and hydroperoxide oxygen content of the edible oil system [49]. The Shapiro-Wilk test was applied to test the distribution of experimental data. The analysis showed that most of our data did not have a normal distribution (p < 0.05), except for the initial day (p = 0.619) and the fourth day (p = 0.36), which concluded the use of non-parametric tests. For each storage period time, we applied the Kruskal-Wallis test to see if we have differences between the PVs of all six tested samples. In all cases, we obtained extremely significant differences (p < 0.001), tested the variance of the samples using the ANOVA test, and obtained the same statistical conclusion (p < 0.001).
Further on, we applied the Mann-Whitney test to compare two samples at the time. The tests revealed that the PVs of the samples treated with MSEO were significantly different from those treated with BHA and BHT. One can notice that, for the initial day, the MSEO (0.2 mg/mL and 0.3 mg/mL, respectively) had significantly lower PVs compared to BHA (p = 0.007; p = 0.02). For day four, we obtained even better results for MSEO (0.2 mg/mL and 0.3 mg/mL, respectively) compared to BHT (p < 0.001). The same results were obtained when the MSEO (0.1, 0.2, and 0.3 mg/mL, respectively) was compared with the BHA (p < 0.001). On day eight, the MSEO (0.1, 0.2, and 0.3 mg/mL) had registered the same tendency versus BHA (p < 0.001). Moreover, we wanted to compare the treated samples' PV variance between the storage days by using the Friedman test. The test revealed extremely significant differences (p < 0.001) between the time points included in the PV daily evolution study.
Peroxides are products of the primary lipid oxidation, which subsequently decomposed into carbonylic and other compounds. The peroxide decomposition products may catalyze further oxidation. TBA values of the cold-pressed sunflower oil samples were also recorded during the storage period to measure such secondary oxidation products.
The TBA value quantifies the malondialdehyde produced from unsaturated fatty acids that result from the oxidation of a lipid system [50]. Figure 1B shows the changes in the TBA values of the studied samples. The Shapiro-Wilk normality test revealed that, besides the initial day, where we had a normal distribution (p = 0.48), the other data were not normally distributed (p < 0.05). Extremely significant differences (p < 0.001) between the TBA values of the tested MSEO samples (0.1, 0.2, and 0.3 mg/mL, respectively) were obtained after running the Kruskal-Wallis test for each testing period. To strengthen this conclusion, we ran a variance analysis between the samples by applying an ANOVA test, which led to the same statistical conclusion (p < 0.001). In order to emphasize the most important differences related to this study, we tested two samples at the time by applying the Mann-Whitney test. We also analyzed the possible differences that can be measured between the TBA values of MSEO (0.1, 0.2, and 0.3 mg/mL), BHA, and BHT, respectively. On the first day, significantly lower TBA values were obtained in the case of MSEO (0.2 mg/mL and 0.3 mg/mL) compared to BHT (p = 0.014; p = 0.009) and MSEO (0.2 mg/mL and 0.3 mg/mL) compared to BHA (p = 0.03; p < 0.001). On day four, we observed extremely significantly lower TBA values in the case of MSEO (0.3 mg/mL) versus BHT and BHA (p < 0.001). The same tendency was noted for day eight with extremely significantly lower TBA values in the case of MSEO (0.3 mg/mL) compared to BHT (p < 0.001). Additionally, for each treated sample, we tested the daily evolution by applying the Friedman test, revealing extremely significant differences (p < 0.001).

Assessment of Antioxidant Activity
The assessment of the MSEO antioxidant activity has been conducted on coldpressed sunflower oil. Figure 1A shows the changes in PVs of the investigated coldpressed sunflower oil samples. The PV measures the total peroxide and hydroperoxide oxygen content of the edible oil system [49]. The Shapiro-Wilk test was applied to test the distribution of experimental data. The analysis showed that most of our data did not have a normal distribution (p < 0.05), except for the initial day (p = 0.619) and the fourth day (p = 0.36), which concluded the use of non-parametric tests. For each storage period time, we applied the Kruskal-Wallis test to see if we have differences between the PVs of all six tested samples. In all cases, we obtained extremely significant differences (p < 0.001), tested the variance of the samples using the ANOVA test, and obtained the same statistical conclusion (p < 0.001). DPPH-radical scavenging models are frequently employed in antioxidant experiments due to their suitable stability [51,52]. DPPH radicals can be scavenged based on the ability of EOs to donate hydrogen radicals to DPPH free radicals, thus reducing them to DPPH-H (2,2-diphenyl-1-picrihydrazine) [53]. The color of DPPH-H turns from purple to yellow, a process that can be quantified by measuring the absorbance at 517 nm [51]. The MSEO antioxidant activity, evaluated by the DPPH radical scavenging assay and expressed as 50% inhibition (IC 50 ), is shown in Table 3. Despite the fact that the IC 50 values of the MSEO (IC 50 : 0.83 ± 0.01 mg/mL) and BHA (IC 50 : 0.76 ± 0.01 mg/mL) are rather close, when we tested the statistical significance of their scavenging activity, extremely significant differences (p < 0.001) were revealed. In contrast, BHT exhibits an extremely significantly (p < 0.001) stronger antioxidant activity (IC 50 : 0.43 ± 0.08 mg/mL) than MSEO (Table 3). No previous investigations were reported in the literature concerning the DPPH radical scavenging capacity of MSEO. However, de Sousa Barros et al. [54] reported a similar IC 50 value (0.86 ± 0.01 mg/mL) for the EO of M. longifolia (Himalayan silver mint) grown in Brasil. Compared to results reported on M. × rotundifolia from Tunisia (IC 50 : 3.77 mg/mL) [55], M. pulegium from Iran (IC 50 : 14.736 ± 0.156 mg/mL) [56], M. × piperita (IC 50 : 5.72 ± 0.06 mg/mL), M. aquatica (IC 50 : 6.75 ± 0.23 mg/mL), and M. arvensis (IC 50 : 57.72 ± 0.11 mg/mL) from Brasil [54], the MSEO exhibited higher activity. In contrast, EOs isolated from M. spicata from Tunisia (IC 50 : 10 ± 0.24 µg/mL) [19], Iran (IC 50 : 13.3 ± 0.6 µg/mL) [57], and Cyprus (IC 50 : 7.74 ± 0.20 µg/mL) [58] were more effective in scavenging DPPH free radical. In the β-carotene and linoleic acid test, in the absence of an antioxidant, β-carotene undergoes rapid bleaching due to oxidation, which leads to the formation of free radicals. The new radicals generated by the loss of a hydrogen atom from the diallylic methylene groups attack the unsaturated β-carotene molecules, which they oxidize and partially decompose [59]. The rate of β-carotene discoloration can be decreased in the presence of antioxidants [31,60]. The relative antioxidant activity (RAA) of MSEO was calculated according to the following equation: RAA = A MSEO /A BHT , where A BHT is the absorption of BHT (positive control used) and A MSEO is the absorption of MSEO. Higher RAA values translated to higher antioxidant capacity. Tested through the linoleic acid system, MSEO exhibited strong antioxidant activity (87.32 ± 0.03%); however, RAA% was lower than the activity calculated for BHT (100%) ( Table 3). No previous reports concerning the β-carotene and linoleic acid test expressed as RAA were available on the Mentha species' antioxidant activity to compare the results directly.

Assessment of Antimicrobial Activity
The antibacterial activity was tested against eight bacterial and fungal strains ( Table 4). The diameters of the inhibition halos induced by MSEO against the tested microbial strains varied between 17.66 ± 0.57 mm and 32.33 ± 2.51 mm, suggesting that the oil exerts broad-spectrum antimicrobial effects. The results revealed that C. albicans and C. parapsilosis were the most susceptible tested strains to the MSEO action, followed by S. pyogenes > S. aureus > E. coli > P. aeruginosa > S. flexneri > S. typhimurium. Our results are in agreement with Jianu et al. [46], which reported that MSEO exerted significant antimicrobial activity against S. aureus, S. typhimurium, P. aeruginosa, and C. albicans. Furthermore, the oils extracted from other members of the mint genus (e.g., M. longifolia, M. spicata, M. viridis, M. suaveolens) significantly inhibited the growth of P. aeruginosa, L. monocytogenes, C. albicans, S. typhimurium, and S. aureus [19][20][21][22].
The recorded MICs of the tested strains were 2.5, 5, 10, and 20 mg/mL, respectively. The MBCs and MFCs were 2.5, 10, and 20 mg/mL, respectively. The MICs and MBCs were consistent with those of the inhibition zones; that is, the larger the inhibition zones' diameter was, the smaller the MICs and MBCs would be (Table 4). Overall, the Gram-positive strains were more susceptible to the oil's action than the Gram-negative strains, in agreement with previous investigations [61]. These susceptibility differences were presumably due to the presence of phospholipids and lipopolysaccharides in the composition of Gram-negative bacteria membrane, which provides protection against the external environment [20,62].

In Silico Prediction of Mechanism by Molecular Docking Analysis
Molecular docking is a powerful tool, often used to gain valuable insight into the possible molecular mechanisms of pharmacologically active substances. Herein molecular docking was employed to identify a possible mechanism of action correlated with the recorded antimicrobial effect of MSEO components. This process was used to evaluate the binding affinity of the 39 compounds from the essential oil to target proteins, usually correlated with bactericidal/bacteriostatic effects, such as DHPS, DHFR, Ddl, penicillin binding protein 1a PBP1a, DNA gyrase, type IV topoisomerase, and isoleucyl-tRNA synthetase IARS. Molecular docking was also used to assess the studied compounds' potential to act as protein inhibitors of targets involved in intracellular antioxidant mechanisms. For this purpose, lipoxygenase, CYP2C9, NADPH-oxidase, and xanthine oxidase was used as protein targets.
The molecular docking results are shown as free binding energies (kcal/mol), the lowest values indicating a high affinity for the target protein ( Table 5). The 39 compounds identified by GC/MS analysis on MSEO represent monoterpene or derived monoterpene structures, most of them having structurally similar scaffolds. Therefore, docking scores were presented as a heat map-type table, using a red-yellow color scheme, ranging from the lowest energy values, highlighted in red (in most cases corresponding to the docking score of the native ligand) to the highest, highlighted as yellow (Table 5), to easily identify a tendency of a set of compounds to act as potential inhibitor compounds with the lowest values close to that of the cocrystalized ligand) for a certain protein.
Monoterpenes are secondary plant metabolites with known antioxidant effects exerted mostly due to their conjugated double bond system within their structure. Some derivatives exhibit this effect by the additional presence of easily oxidizable groups, such as phenolic or alcoholic hydroxyls [63]. The docking results for the second subset of target proteins showed a tendency for several compounds to behave as potential inhibitors for xanthine oxidase (3NRZ). Xanthine oxidoreductase is the enzyme responsible for the catalyzed oxidation of hypoxanthine to xanthine followed by xanthine's transformation to uric acid. In addition to this function, mammalian xanthine oxidase is a physiological source of reactive oxygen species (ROS), such as superoxide ion and hydrogen peroxide, which can function as second messengers in activating various pathways [64]. can assume that the MSEO can exert an in vitro antioxidant effect through xanthine oxidase inhibition. The best scoring structures were the two isomers (cis-trans) of p-mentha−2,8-dien−1-ol, with the cis isomer recording the lowest binding energy (−7.8 kcal/mol). Binding analysis showed that the structure was well accommodated in the xanthine oxidase binding pocket through 3 HB formed with Glu802, Glu1261, and Ala1079, by means of the hydroxyl group, and was well stabilized by several additional hydrophobic interactions ( Figure 2). Regarding the set of target protein structures involved in antimicrobial activity, the results indicate an increased affinity of most docked structures towards the D-Alanine-dalanine ligase (DDI) (2ZDQ). DDl is the enzyme that catalyzes the condensation of two D-Ala molecules using ATP to produce d-Ala-d-Ala, which is the terminal peptide of a peptidoglycan monomer. The cell-wall peptidoglycan polymer is produced through crosslinking of peptidoglycan monomer units [66]. Of the docked compounds, 17 showed similar affinity for DDl compared to that of the cocrystallized ligand (alanine, −6.2 kcal/mol) and 6 of them ((1R,4R)−4-Isopropenyl−1-methyl−2-cyclohexen−1-yl hydroperoxide, −6.6 kcal/mol; 3,6,6-Trimethyl−8-oxabicyclo [5.1.0] oct−2-en−4-one, −6,5 kcal/mol; Calamenene −6.3 kcal/mol; Cariophillene oxyde, −6.4 kcal/mol; Carvyl acetate, −6.6 kcal/mol; Lavamenthe, −6.7 kcal/mol) showed lower binding energies than those recorded for the cocrystallized ligand, indicating a possible higher affinity for the target protein. Other studies have shown that monoterpenes, such as menthol, thymol, and linalyl acetate, also exert their bactericidal effect by bacterial cell wall denaturation, causing leakage of essential nutrients [67]. Therefore, the assumption that one of the antibacterial mechanisms of the Regarding the set of target protein structures involved in antimicrobial activity, the results indicate an increased affinity of most docked structures towards the D-Alanined-alanine ligase (DDI) (2ZDQ). DDl is the enzyme that catalyzes the condensation of two D-Ala molecules using ATP to produce d-Ala-d-Ala, which is the terminal peptide of a peptidoglycan monomer. The cell-wall peptidoglycan polymer is produced through cross-linking of peptidoglycan monomer units [66]. Of the docked compounds, 17 showed similar affinity for DDl compared to that of the cocrystallized ligand (alanine, −6.2 kcal/mol) and 6 of them ((1R,4R)-4-Isopropenyl-1-methyl-2-cyclohexen-1-yl hydroperoxide, −6.6 kcal/mol; 3,6,6-Trimethyl-8-oxabicyclo [5.1.0] oct-2-en-4-one, −6.5 kcal/mol; Calamenene −6.3 kcal/mol; Cariophillene oxyde, −6.4 kcal/mol; Carvyl acetate, −6.6 kcal/mol; Lavamenthe, −6.7 kcal/mol) showed lower binding energies than those recorded for the cocrystallized ligand, indicating a possible higher affinity for the target protein. Other studies have shown that monoterpenes, such as menthol, thymol, and linalyl acetate, also exert their bactericidal effect by bacterial cell wall denaturation, causing leakage of essential nutrients [67]. Therefore, the assumption that one of the antibacterial mechanisms of the EO's monoterpene components is the inhibition of bacterial wall synthesis, by inhibiting the DDl enzyme, is highly plausible. These results also support the fact that the antibacterial effect of the MSEO is mainly attributed to the lower concentration components. According to our results, while carvone (first major component) showed good binding affinity (−6.1 kcal/mol), slightly lower than the value calculated for Ala, limonene (second major component) is not ranked between the 17 active compounds mentioned above. In fact, the 6 compounds with the highest predicted affinity make up a little over 4% of the total oil composition.
Lavamenthe was recorded as the compound with the best docking score. Binding analysis showed a good accommodation of the structure within the protein binding site ( Figure 3A). The oxo group is very well oriented, forming three hydrogen bonds (HBs) with Arg268, Gly288, and Ser293. The structure also interacts with ATP through an electrostatic interaction and is stabilized in the binding pocket through several hydrophobic interactions. On the other hand, compounds, such as 3,6,6-Trimethyl-8-oxabicyclo [5.1.0] oct-2-en-4-one, bearing a different scaffold than the usual monoterpene structure also recorded very good docking scores. Binding analysis showed a somewhat different interaction in the protein binding pocket ( Figure 3B). The compound formed two HBs on opposite sides of the core ring, with Ser159 and Ser293, and interacted with His82 through a hydrophobic interaction but did not interact with the ATP structure. oil composition.
Lavamenthe was recorded as the compound with the best docking score. Binding analysis showed a good accommodation of the structure within the protein binding site ( Figure 3A). The oxo group is very well oriented, forming three hydrogen bonds (HBs) with Arg268, Gly288, and Ser293. The structure also interacts with ATP through an electrostatic interaction and is stabilized in the binding pocket through several hydrophobic interactions. On the other hand, compounds, such as 3,6,6-Trimethyl−8-oxabicyclo [5.1.0] oct−2-en−4-one, bearing a different scaffold than the usual monoterpene structure also recorded very good docking scores. Binding analysis showed a somewhat different interaction in the protein binding pocket ( Figure 3B). The compound formed two HBs on opposite sides of the core ring, with Ser159 and Ser293, and interacted with His82 through a hydrophobic interaction but did not interact with the ATP structure.

Conclusions
Our findings revealed that MSEO is rich in monoterpene or monoterpene derivatives, mainly carvone, limonene, trans-carveol, cis-carveol, beta-bourbonene, and caryophyllene oxide. MSEO in different concentrations (0.1, 0.2, and 0.3 mg/mL, respectively) and storage period time points inhibits the formation of primary and secondary oxidation products. Moreover, the results of 1,1-diphenyl−2-picrylhydrazyl and β-carotene/linoleic acid bleaching assays indicated that the MSEO exhibits a strong antioxidant activity. The oil also exerted broad-spectrum antibacterial and antifungal effects. Molecular docking studies show that the MSEO compounds' antimicrobial activity could be exerted due to the DDl enzyme inhibition and may be attributed to a cumulative effect; however, the most active compounds are minor components of the oil. In addition, the results suggested that the in vitro antioxidant activity presumably employs xanthine oxidase inhibition. In light of these findings, MSEO might represent a new source of natural preservatives with potential application in the food and pharmaceutical industries.

Conclusions
Our findings revealed that MSEO is rich in monoterpene or monoterpene derivatives, mainly carvone, limonene, trans-carveol, cis-carveol, beta-bourbonene, and caryophyllene oxide. MSEO in different concentrations (0.1, 0.2, and 0.3 mg/mL, respectively) and storage period time points inhibits the formation of primary and secondary oxidation products. Moreover, the results of 1,1-diphenyl−2-picrylhydrazyl and β-carotene/linoleic acid bleaching assays indicated that the MSEO exhibits a strong antioxidant activity. The oil also exerted broad-spectrum antibacterial and antifungal effects. Molecular docking studies show that the MSEO compounds' antimicrobial activity could be exerted due to the DDl enzyme inhibition and may be attributed to a cumulative effect; however, the most active compounds are minor components of the oil. In addition, the results suggested that the in vitro antioxidant activity presumably employs xanthine oxidase inhibition. In light of these findings, MSEO might represent a new source of natural preservatives with potential application in the food and pharmaceutical industries.