FastQCFastQC Report
Wed 13 Feb 2019
CerD33_forward_paired.fq

Summary

[OK]Basic Statistics

MeasureValue
FilenameCerD33_forward_paired.fq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22236452
Sequences flagged as poor quality0
Sequence length50-150
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCGGGG5253.6379788E-1220.2774891
CCCGCAT39900.016.7200361
CGCCTCT60800.013.0736441
CGCGCAT11151.8189894E-1212.7302621
CGGGCAT80650.012.4958621
CTCGAAC127550.012.0742861
CGCCCAT61600.011.7517271
AATCCGC58950.011.5576525
CGGGGAT50600.011.3610041
AGATCGG102650.011.233273140-144
CGGGAAT97300.011.0140311
CGCGCAC7201.5977628E-510.8428241
CGCATGC46500.010.8364653
CGGGCGT11854.6929927E-1010.7804371
CGCGTTT19750.010.78043651
CGCCCCT29000.010.7680451
CCGCATG46900.010.7440432
CGAACAT127000.010.6736243
CGCACAT38800.010.4261831
CGCCCTT78800.010.1773431