FastQCFastQC Report
Wed 13 Feb 2019
CerD22_forward_paired.fq

Summary

[OK]Basic Statistics

MeasureValue
FilenameCerD22_forward_paired.fq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23684235
Sequences flagged as poor quality0
Sequence length50-150
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCGGGG5600.020.2881831
CGCGTTT19950.013.1695231
AGATCGG119200.012.319368140-144
CGGGGAT56000.012.172911
CCCGCAT40450.011.5860821
CGCCTCT64400.011.5774961
CGGGCAT89500.011.5041931
CGCCTAT23900.011.2900781
CGGGCGT11452.564775E-1011.1629311
CGCGTAT11452.564775E-1011.1629311
CGGGGGT17600.010.4899131
CGCCCAT68900.010.4091041
CGGGGAC49550.010.3181081
CTCGAAC126650.010.1480961
CGCGTGT10501.02065314E-710.1440921
CCCGCCT39450.010.0798071
CGCCCCT31300.09.9820451
CCCGCTT32850.09.9433721
CGGGAAT106650.09.8539891
CGGGCCT25500.09.74628451