FastQCFastQC Report
Wed 13 Feb 2019
CerB79_forward_paired.fq

Summary

[OK]Basic Statistics

MeasureValue
FilenameCerB79_forward_paired.fq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18598712
Sequences flagged as poor quality0
Sequence length50-150
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGGCAT54350.022.5683351
TCCGCTC54050.018.364767
CGCGGGG5451.1823431E-1018.2131251
AATCCGC57150.017.8648435
CCGCTCT63400.014.7615038
CGCTCTC66850.014.42392359
GCCCGGG23850.014.26940255
CGGGGAT46350.012.8493891
CGGGGGG17150.012.8159421
ATCCGCT90350.012.7127596
AGATCGG109800.012.634328140-144
CAATCCG80100.012.4807184
CCCGGGC26500.012.307366
CGCGCAC8254.0938176E-812.0317011
CCCGCAT27850.011.4561911
CCGGGAT57100.011.1753031
CGCGTAT12751.2732926E-1111.121741
CGGGCTT39900.011.0172131
CGCGAAT26700.010.8874341
CCCGCCT28100.010.8496341