FastQCFastQC Report
Wed 13 Feb 2019
CerB81_reverse_paired.fq

Summary

[OK]Basic Statistics

MeasureValue
FilenameCerB81_reverse_paired.fq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21618075
Sequences flagged as poor quality0
Sequence length50-150
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCGGGG7100.024.5383171
CGGGCAT56050.016.909331
CGGGGAT52500.013.5395411
AATCCGC59950.012.9005875
CCCGCAT30000.012.5439861
CGGGAAT94250.011.53471
AGATCGG114750.011.486185140-144
CGCCTCT72300.011.2774431
CGGGGTA23450.010.9956781
CGCGGAT23700.010.8796891
CGGGTAT41000.010.8782541
CGAAAAC126050.010.7808951
CGGGCGT11152.6611815E-910.6252011
TCCGCTC56500.010.60539157
CCCGGCT28500.010.5144541
CCCGGAT65700.010.5010551
CGGGCTT45350.010.4494811
CGGGCCC10259.440373E-810.1983631
CGGGGGG19150.010.1894871
CGCCCCT33650.010.1478511