Basic Statistics
Measure | Value |
---|---|
Filename | CerC38_forward_paired.fq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 17567580 |
Sequences flagged as poor quality | 0 |
Sequence length | 50-150 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGCGGGG | 405 | 0.0 | 36.842415 | 1 |
CTCGAAC | 8875 | 0.0 | 27.060272 | 1 |
CGAACAT | 9060 | 0.0 | 23.84126 | 3 |
TCGAACA | 9670 | 0.0 | 22.484268 | 2 |
CGGGGCG | 640 | 0.0 | 22.204134 | 1 |
CGCGGTT | 1415 | 0.0 | 21.592148 | 1 |
CGCCTCT | 3960 | 0.0 | 21.531282 | 1 |
CGCGGGT | 860 | 0.0 | 21.481209 | 1 |
CGCGCAT | 705 | 0.0 | 21.164793 | 1 |
CGCGTAT | 760 | 0.0 | 19.63313 | 1 |
AGATCGG | 9305 | 0.0 | 17.896671 | 140-144 |
CGCGCGG | 245 | 0.0013942157 | 17.400791 | 1 |
CGGGGAT | 2875 | 0.0 | 15.322783 | 1 |
CGGGGTT | 2655 | 0.0 | 15.254366 | 1 |
GCGGGGT | 990 | 0.0 | 15.071898 | 1 |
CGCCTCG | 1255 | 0.0 | 14.720192 | 1 |
CGCGTCT | 735 | 5.0931703E-10 | 14.500659 | 1 |
CCCATAC | 11695 | 0.0 | 14.155603 | 8 |
GGTTAAC | 15785 | 0.0 | 14.044098 | 1 |
GCGGGTT | 1515 | 0.0 | 13.600948 | 1 |