FastQCFastQC Report
Wed 13 Feb 2019
CerB72_reverse_paired.fq

Summary

[OK]Basic Statistics

MeasureValue
FilenameCerB72_reverse_paired.fq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19008814
Sequences flagged as poor quality0
Sequence length50-150
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCGGGG5550.020.0742031
CGGGCAT49350.015.6619971
CCCGGCT24600.014.7190421
TCCGCTC47700.014.0115967
CGCGTAT11250.013.6170011
AATCCGC53000.013.1357695
CGCGTTT19600.012.4343561
AGATCGG93800.012.060377140-144
CGCGCAC9301.7898856E-911.9797671
CGCGCAT12309.094947E-1211.322341
CGCCCTT49450.011.2650991
CGGGAAT82800.010.9326231
CGCTCTC61400.010.8852319
CCGCTCT60750.010.6578958
ATCCGCT75250.010.3620646
GCCCGAT39700.010.3483911
CCCGCAT27800.010.2695261
CGCCCAT48900.010.2526231
CAATCCG80300.09.8837254
CGCACAC26900.09.8365461