Basic Statistics
Measure | Value |
---|---|
Filename | CerA21_reverse_paired.fq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 21167042 |
Sequences flagged as poor quality | 0 |
Sequence length | 50-150 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGCGGGG | 555 | 0.0 | 25.091652 | 1 |
AGATCGG | 14230 | 0.0 | 12.651171 | 140-144 |
CGGGGGG | 1770 | 0.0 | 11.801582 | 1 |
CGGGCCT | 2915 | 0.0 | 11.704415 | 1 |
CGGGGAT | 5930 | 0.0 | 11.624458 | 1 |
CGCACAT | 3565 | 0.0 | 11.523509 | 1 |
CTCGCTA | 5070 | 0.0 | 11.258782 | 9 |
CGCGTTT | 2120 | 0.0 | 11.166968 | 1 |
CGCGGAT | 2265 | 0.0 | 11.066914 | 1 |
CGGGCAT | 5815 | 0.0 | 11.016163 | 1 |
CGCCCTT | 5185 | 0.0 | 10.608905 | 1 |
GGAAAAT | 48160 | 0.0 | 10.597654 | 1 |
CCCGGCT | 2715 | 0.0 | 10.514927 | 1 |
CGCCCAT | 5860 | 0.0 | 10.456282 | 1 |
CCCGAAT | 7435 | 0.0 | 10.395233 | 1 |
CCCGACT | 4115 | 0.0 | 9.983306 | 1 |
CCCGGTT | 5770 | 0.0 | 9.65398 | 1 |
CCGGGTT | 5785 | 0.0 | 9.628948 | 1 |
CGCCCCT | 3625 | 0.0 | 9.604046 | 1 |
CTCGGAT | 8490 | 0.0 | 9.513548 | 1 |