FastQCFastQC Report
Wed 13 Feb 2019
CerB72_forward_paired.fq

Summary

[OK]Basic Statistics

MeasureValue
FilenameCerB72_forward_paired.fq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19008814
Sequences flagged as poor quality0
Sequence length50-150
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGGCAT52250.016.290571
CGCGGGG5406.4285086E-714.449081
CGCCCTT48850.012.9231011
AATCCGC52500.011.889535
CGCACAT29850.011.8813821
CGCGGTT17350.011.8560441
CGCCCAT46900.011.6455281
CGGGGAT44200.010.9125931
CGCCCCT29550.010.80180551
CGGGAAT88900.010.7714281
CGCCTAT27050.010.7512241
CGGGCTT42250.010.7447061
CCCGGCT26500.010.7066951
CGCGTTT20050.010.6132441
CCCGGTT50300.010.576321
CCCGCAT24700.010.3382451
TCCGCTC48750.010.3305887
AGATCGG100100.010.30868140-144
TGCGCGC9854.7103276E-710.0813679
CCGGGAT58000.09.9061