FastQCFastQC Report
Wed 13 Feb 2019
CerC38_forward_paired.fq

Summary

[OK]Basic Statistics

MeasureValue
FilenameCerC38_forward_paired.fq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17567580
Sequences flagged as poor quality0
Sequence length50-150
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCGGGG4050.036.8424151
CTCGAAC88750.027.0602721
CGAACAT90600.023.841263
TCGAACA96700.022.4842682
CGGGGCG6400.022.2041341
CGCGGTT14150.021.5921481
CGCCTCT39600.021.5312821
CGCGGGT8600.021.4812091
CGCGCAT7050.021.1647931
CGCGTAT7600.019.633131
AGATCGG93050.017.896671140-144
CGCGCGG2450.001394215717.4007911
CGGGGAT28750.015.3227831
CGGGGTT26550.015.2543661
GCGGGGT9900.015.0718981
CGCCTCG12550.014.7201921
CGCGTCT7355.0931703E-1014.5006591
CCCATAC116950.014.1556038
GGTTAAC157850.014.0440981
GCGGGTT15150.013.6009481