Uncovering the Floral Origins of Honey Bee Pollen in Colombian Tropical Dry Forest: A Low-Cost DNA Barcoding Approach Reveals Cactaceae Dominance
Abstract
1. Introduction
2. Results
2.1. Disruption Method Performance
2.2. Quantification of DNA Yield and Purity
2.3. PCR Amplification
2.4. Molecular Identification of Bee Bread Samples
2.5. Pollen Micrographs
3. Discussion
4. Materials and Methods
4.1. Study Area
4.2. Pollen Collection
4.3. Evaluation of Pollen Grain Rupture Methods
4.4. DNA Extraction
4.5. PCR and Sequencing
4.6. Microscopic Analysis of Pollen
4.7. Data Analysis
5. Conclusions
Supplementary Materials
Author Contributions
Funding
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
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| Method | DNA (ng/μL) | A260/A280 | A260/A230 |
|---|---|---|---|
| Mortar | 1157 | 2.09 | 1.97 |
| Glass beads | 380 | 2.08 | 2.07 |
| Cordless Homogenizer | 1241 | 2.09 | 2.04 |
| Sample Origin | Samples Type | DNA (ng/μL) | A260/A280 | A260/A230 |
|---|---|---|---|---|
| Hive 1 | Bee bread | 1387 ± 341 | 2.14 ± 0.01 | 2.21 ± 0.05 |
| Hive 2 | Bee bread | 910 ± 148 | 2.12 ± 0.01 | 2.22 ± 0.03 |
| Hive 3 | Bee bread | 1142 ± 289 | 2.12 ± 0.01 | 2.15 ± 0.05 |
| Commercial pollen | Dry pollen | 327 ± 72 | 1.96 ± 0.01 | 1.89 ± 0.04 |
| Sample Origin | matK | rbcL | ||||
|---|---|---|---|---|---|---|
| Percent Sequence Identity (%) | E-Value | Total Score | Percent Sequence Identity (%) | E-Value | Total Score | |
| Hive 1 | 97.0 ± 1.1 | 0.0 ± 0.0 | 1235 ± 36 | 98.0 ± 0.9 | 0.0 ± 0.0 | 1437 ± 36 |
| Hive 2 | 89.0 ± 8.0 | 2.3 × 10−114 ± 2.0 × 10−114 | 826 ± 382 | 99.0 ± 0.6 | 0.0 ± 0.0 | 1489 ± 8 |
| Hive 3 | 97.0 ±0.5 | 0.0 ± 0.0 | 1208 ± 28 | 99.0 ± 0.1 | 0.0 ± 0.0 | 1480 ± 11 |
| Top Hit Genus | Percent Query Coverage (%) | Percent Sequence Identity (%) | Total Score | Assigned Accession Number |
|---|---|---|---|---|
| Leuenbergeria | 99 | 99 | 1373 | AY875242.1 |
| Rhodocactus | 99 | 99 | 1359 | AY875244.1 |
| Pereskia | 98 | 98 | 1313 | OR711232.1 |
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Lobo-Torres, M.; Mantilla-Escalante, D.C.; Anaya, B.J.; Tirado, D.F.; Arenas-Gómez, C.M. Uncovering the Floral Origins of Honey Bee Pollen in Colombian Tropical Dry Forest: A Low-Cost DNA Barcoding Approach Reveals Cactaceae Dominance. Plants 2025, 14, 3652. https://doi.org/10.3390/plants14233652
Lobo-Torres M, Mantilla-Escalante DC, Anaya BJ, Tirado DF, Arenas-Gómez CM. Uncovering the Floral Origins of Honey Bee Pollen in Colombian Tropical Dry Forest: A Low-Cost DNA Barcoding Approach Reveals Cactaceae Dominance. Plants. 2025; 14(23):3652. https://doi.org/10.3390/plants14233652
Chicago/Turabian StyleLobo-Torres, Maryuri, Diana C. Mantilla-Escalante, Brayan J. Anaya, Diego F. Tirado, and Claudia M. Arenas-Gómez. 2025. "Uncovering the Floral Origins of Honey Bee Pollen in Colombian Tropical Dry Forest: A Low-Cost DNA Barcoding Approach Reveals Cactaceae Dominance" Plants 14, no. 23: 3652. https://doi.org/10.3390/plants14233652
APA StyleLobo-Torres, M., Mantilla-Escalante, D. C., Anaya, B. J., Tirado, D. F., & Arenas-Gómez, C. M. (2025). Uncovering the Floral Origins of Honey Bee Pollen in Colombian Tropical Dry Forest: A Low-Cost DNA Barcoding Approach Reveals Cactaceae Dominance. Plants, 14(23), 3652. https://doi.org/10.3390/plants14233652

