The First Defined Null Allele of the Notch Regulator, a Suppressor of Deltex: Uncovering Its Novel Roles in Drosophila melanogaster Oogenesis

Suppressor of deltex (Su(dx)) is a Drosophila melanogaster member of the NEDD4 family of the HECT domain E3 ubiquitin ligases. Su(dx) acts as a regulator of Notch endocytic trafficking, promoting Notch lysosomal degradation and the down-regulation of both ligand-dependent and ligand-independent signalling, the latter involving trafficking through the endocytic pathway and activation of the endo/lysosomal membrane. Mutations of Su(dx) result in developmental phenotypes in the Drosophila wing that reflect increased Notch signalling, leading to gaps in the specification of the wing veins, and Su(dx) functions to provide the developmental robustness of Notch activity to environmental temperature shifts. The full developmental functions of Su(dx) are unclear; however, this is due to a lack of a clearly defined null allele. Here we report the first defined null mutation of Su(dx), generated by P-element excision, which removes the complete open reading frame. We show that the mutation is recessive-viable, with the Notch gain of function phenotypes affecting wing vein and leg development. We further uncover new roles for Su(dx) in Drosophila oogenesis, where it regulates interfollicular stalk formation, egg chamber separation and germline cyst enwrapment by the follicle stem cells. Interestingly, while the null allele exhibited a gain in Notch activity during oogenesis, the previously described Su(dx)SP allele, which carries a seven amino acid in-frame deletion, displayed a Notch loss of function phenotypes and an increase in follicle stem cell turnover. This is despite both alleles displaying similar Notch gain of function in wing development. We attribute this unexpected context-dependent outcome of Su(dx)sp being due to the partial retention of function by the intact C2 and WW domain regions of the protein. Our results extend our understanding of the developmental role of Su(dx) in the tissue renewal and homeostasis of the Drosophila ovary and illustrate the importance of examining an allelic series of mutations to fully understand developmental functions.


Introduction
Notch signalling has many fundamental and diverse roles during both development and adult tissue homeostasis [1].Its core pathway is initiated by ligand-induced proteolytic cleavage that removes most of the extracellular domain (ECD), followed by intramembrane processing that releases the intracellular domain (ICD) [2].The latter becomes a component in a transcription factor complex involving the transcription factor Suppressor of Hairless and coactivator protein Mastermind.In this active ICD-bound form, the complex binds to Su(H) DNA binding motifs and regulates the expression of target genes such as the E(spl) complex [3,4].Despite the relative simplicity of the core pathway mechanism, Notch is involved in a wide variety of cell fate decisions and different tissue patterning contexts, Biomolecules 2024, 14, 522 2 of 18 such as lateral inhibition, boundary formation and asymmetric cell fate decisions.In order for Notch signalling to be deployed in this wide range of different contexts, a number of regulatory systems have evolved to tune the amplitude and duration of Notch activity, according to different physiological inputs and developmental patterning requirements.For example, carbohydrate modifications of the ECD determine its affinities for different ligands and ICD modifications, such as phosphorylation and ubiquitination, which are associated with proteosomal degradation, intracellular trafficking, lysosomal degradation and ligandindependent activation mechanisms [5][6][7].Suppressor of deltex (Su(dx)) is a HECT domain E3 ubiquitin ligase of the Nedd4 family whose origin in evolution predates the origin of core Notch pathway components [8].In yeast, for example, the yeast homologues RSP5 and Pub1 are involved in environmental sensing mechanisms that regulate the trafficking and activity of nutrient transporters [9,10].In humans, Nedd4-2 has been linked to the trafficking of a Na channel involved in salt balance and blood pressure regulation [11].Su(dx) was originally linked to Notch by the positional cloning of gene mutations that dominantly suppress the mutant phenotypes of another ubiquitin ligase regulator of Notch called Deltex [12], which itself acts to promote ligand-independent signal activation [13,14].Other Nedd4 family members have been linked to Notch regulation across a number of metazoan species [15][16][17][18].
In a wild-type setting, mutations of Su(dx) alone cause wing vein gap phenotypes symptomatic of gain-of-function Notch activity [12].The mutant phenotype is temperaturesensitive, with increased Notch activity observed at high temperatures.It was found that Su(dx) acts with Deltex in a robustness module that stabilised the Notch signalling across the physiological temperature range of the fly through a balance of temperaturedependent fluxes affecting the relative contributions of ligand-dependent and independent signals [14].By acting in a network of trafficking routes, both Su(dx) and Dx can act positively or negatively on Notch, sometimes acting antagonistically to each other, and sometimes acting together in the same direction.For example, double homozygous alleles of dx and Su(dx) produce extra leg joints, an outcome of increased Notch activity, but the mutants mutually suppress each other's phenotypes in wing development above 18 • C, and combine to produce Notch loss of function phenotypes below 18 • C [14].Su(dx) is more effective at down-regulating Notch at higher temperatures due to the temperaturedependent activation of its ubiquitin ligase function.Other developmental functions of Su(dx) are revealed by the genetic interactions between Su(dx) alleles and Notch pathway mutants.For example, Su(dx) mutants suppress their wing notching phenotypes due to the loss of one copy of the Notch gene, or the homozygous nd 1 allele of Notch [12].Existing mutant alleles of Su(dx) are either uncharacterised molecularly, carry a small in-frame deletion in the HECT domain (Su(dx) sp ), or are truncation mutants which leave open the possibility of the expression of a part of the protein [8,12].To examine the full requirement for Su(dx), it is necessary to generate a defined null allele in which the complete open reading frame is deleted.In this study, we generated the first defined null allele, Su(dx) JD , using imprecise p-element excision [19].We show that, in the wing and leg tissues, the null phenotype is essentially similar to the phenotypes reported for existing Su(dx) alleles, i.e., it demonstrates similar temperature-dependent outcomes and genetic interactions with dx and Notch alleles.We also identifynew phenotypes arising in adult female oogenesis.Interestingly, the observed phenotypes in the ovary differ markedly between Su(dx) JD and the other Su(dx) alleles tested.The former display phenotypes characteristic of a Notch signal gain of function while combinations of the other alleles displayed reduced stalk length, incomplete separation of successive egg chambers and compound egg chambers, characteristic of a Notch loss of function.The null allele further reveals a novel role for Su(dx) in regulating the cell extensions of follicle progenitor cells that cross the germarium between successive germline cysts, and whose misregulation results in split cysts.We also attribute this phenotype to a Notch gain of function.This work thus identifies new roles for Su(dx) in the adult homeostasis of the ovary and highlights how the complexity of genotype/phenotype links requires the consideration of a range of mutant alleles.

Generation of Mitotic Clones
To enable mitotic clone generation, Su(dx) sp and Su(dx) JD alleles were recombined with frt40A (Bloomington, IN, USA).For positive marked clones, frt40, Su(dx) lines were crossed to hsflp1, uas cd8gfp:tubgal80, frt40A; actgal4 (Bloomington).For the follicle stem cell turnover assay, using negatively marked Su(dx) sp , Su(dx) JD and WT control clones, the following stocks were generated: hsflp 1 /+;Su(dx)frt40A/P{Ubi-GFP(S65T)nls}2L P{neoFRT}40A and hsflp 1 /+;frt40A/P{Ubi-GFP(S65T)nls}2L P{neoFRT}40A, using component stocks obtained from Bloomington.One-day-old adult flies were heat-shocked for 60 min at 40 • C and then reared for minimum of 1 week at 25 • C to ensure that any clones generated in the dividing follicle cells were cleared from the germarium and egg chambers and that the clones scored, up to stage 5 egg chambers inclusive, originated in the stem cells.
For the examination of the stem cell processes in positively marked clones, the following genotypes were generated, using components obtained from Bloomington stock centre.For WT clones: P{ry[+t7.2]= hsFLP}1, y [1]

Antibodies and Immunostaining
The primary antibodies used were Goat anti-GFP (Abcam, Cambridge, UK, used 1:250), mouse anti-Fasciclin III (Isotype IgG2A, Developmental Studies Hybridoma Bank, University of Iowa, USA used 1:40), mouse anti-Discs Large (Isotype IgG1, Developmental Studies Hybridoma Bank, University of Iowa, used 1:40) and Rabbit anti-Su(dx) [23] (used 1/500).The latter was first preabsorbed against crushed adult Su(dx) JD tissue for 1 week at 4 • C, in 0.1% tween to remove background staining.Secondary antibodies were obtained from Jackson ImmunoResearch Laboratories, Inc. Cambridge, UK, and used 1:500.Ovaries were dissected in ice-cold PBS and then fixed in 1 mL of 4% formaldehyde for 20 min at room temperature.After fixation, ovarioles were washed for 3 × 5 min in 0.1% PBS-Tw20.Ovarioles were then incubated with the primary antibodies in PBS-Tw20 at the given dilution, overnight at 4 • C. Antibodies were removed and washed for 6 × 5 min in 0.1% PBS-Tw20 at RT. Ovarioles were then incubated with the appropriate secondary antibody in PBS-Tw for 2 to 4 h at 4 • C in the dark.Tissue preparations were again washed for 6 × 5 min in 0.1%PBS-Tw20 at RT.If Actin was to be visualized then, following secondary antibody staining, ovarioles were incubated with 0.5% Alexa 647-Phalloidin (Thermo Fisher, Waltham, MA, USA) in PBT-Tw for 1 h.Preparations were washed for 5 × 5 min in 0.1%PBS-Tw20 before mounting in 4 .6-dianidino-2-phenylindole(DAPI) Vectashield mounting medium (Vector Laboratories).Ovarioles were examined using a Zeiss Axioskop fluorescence microscope (Carl Zeiss, Oberkochen, Germany).Images were captured using a cooled Hamamatsu digital camera and processed on an Apple Macintosh G4-500 computer using Improvision Openlab II Deconvolution and Adobe Photoshop CS5.1 software Where images were deconvoluted, serial Z sections of 0.5 µm were taken through a sample.Each layer was deconvoluted using the 3 nearest neighbours above and below the section of interest.
For the scoring of signalling levels in FSCs using GFP reporter constructs, mean fluoresence intensity was calculated for a 25 pixel diameter region in a Z-section through the plane of the FSC.The background level, from a non-stained region in the same tissue, was subtracted and the result normalised to background-subtracted GFP levels of wild-type flies.For the scoring of signalling levels in wing imaginal discs, a similar procedure was used on separate regions encompassing the dorsal/ventral boundary.

Adult Wing/Leg Mounting
Adult wings were dissected using fine forceps and mounted on slides in Gary's magic mounting media (Canada balsam thinned with methysalicitate, Sigma-Aldrich, St. Louis, MO, USA).

Scoring of Ovariole Phenotypes
To assess egg chamber production, ovarioles were stained with DAPI and the numbers of egg chambers were scored between stage 2 (the earliest stage to exit the germarium) and stage 8. Stalk length was assessed as the mean numbers of cells present in the stalks, anterior and posterior to stage four egg chambers.To define the number of mature cysts present in the germarium, ovarioles were stained with anti-FasIII and the numbers of cysts surrounded by FasIII-positive cells were counted.Split cyst egg chambers were scored by counting the number of germ line nurses and oocytes per egg chamber.To score for delays in egg chamber separation, the stage of the most recently pinched off egg chamber to exit the posterior of the germarium was assessed according to published criteria [24].

Generation of a Defined Null Allele of the Suppressor of Deltex
To generate a null allele of Su(dx), an imprecise excision of P-element EP-735A was performed and the extent of the resulting deletion confirmed by sequencing, utilising PCR primers flanking the Su(dx) locus (Figure 1A,B).A new, homozygous, viable null allele, Su(dx) JD , was generated, in which the complete coding sequence of the Su(dx) gene was removed.The loss of Su(dx) protein expression was confirmed by the immunostaining of mitotic clones using a previously generated antibody, which targets the WW domain region of Su(dx).Endogenous Su(dx) was detected both at the cell-cell junctions and in punctate organelles within the cytoplasm (Figure 1C,D).Staining with compartment markers showed that Su(dx) was localised to endosomal-pathway-associated organelles including Rab4-, Rab5-and Rab7-positive compartments and at the cell boundaries (Supplementary Figure S1A-C).Clones of the homozygous Su(dx) JD allele showed a loss of immunolocalization compared to heterozygous regions outside of the clone (Figure 1C,C').In contrast, Su(dx)'s immunofluorescence was observed in organelle compartments in clones of the Su(dx) sp allele, which carries a seven amino acid in-frame deletion in the HECT domain (Figure 1D,D').Immunostaining of the sp allele was also observed at the cell boundaries, although this was reduced compared to WT.
We compared the phenotypes of Su(dx) JD with those previously described for existing Su(dx) alleles.As with other alleles, Su(dx) JD acted as a dominant suppressor of the dx mutant phenotype (Figure 1E-G), suppressing the wing margin and vein thickening phenotypes, and also dominantly suppressing the wing margin phenotype of notchoid 1 (nd 1 ), a hypomorphic allele of Notch.This combination also produced a wing vein gap phenotype that has previously been observed in the interaction between Su(dx) sp and nd 1 , although this was less extensive and at a lower penetrance with the JD allele (Supplementary Figure S2).At 14 • C, the Su(dx) JD allele displayed a similar genetic interaction with the dx 152 null allele to that previously described for the Su(dx) sp allele.At this low temperature, Su(dx) JD wings appear to be wild-type, while dx 152 wings have small deltas where the longitudinal veins meet the wing margin (Figure 2H,I).The double homozygous combination of dx 152 with Su(dx) JD results in increased numbers of vein deltas per wing, which are also increased in severity, together with additional vein thickening and cross vein spurs, hence Su(dx) JD acts as an enhancer of dx at this low temperature (Figure 2J,K).At 30 • C, Su(dx) JD had a similar, recessive, temperature-dependent wing vein loss phenotype to other Su(dx) alleles (Figure 1L,M,Q), a phenotype indicative of a Notch gain of function, although the null allele had a lower penetrance for this phenotype than the sp allele.Su(dx) JD failed to complement Su(dx) sp and Su(dx) 56 for this phenotype (Figure 1Q) and, furthermore, the wing phenotypes of Su(dx) JD were rescued by a single copy of a genomic rescue construct carrying the WT Su(dx) gene (Figure 1Q).The dx mutation also rescued the Su(dx) JD wing phenotypes (Figure 1N,Q), as it does with the other alleles [12].The latter combination, at 25 • C, also resulted in extra leg joints, indicative of increased Notch activity (Figure 1O,P,R), an interaction previously observed with the Su(dx) sp allele [14].Unlike with Su(dx) sp , the null allele also showed a small percentage of legs with extra joints in a WT context, a phenotype which was rescued by the genomic Su(dx) rescue construct (Figure 1R).We conclude, therefore, that Su(dx) JD is a defined null of the Su(dx) gene with adult wing and leg phenotypes that are qualitatively similar to those of previously described Su(dx) alleles.

Allele-Specific Differences of Su(dx) Mutant Cyst Packaging Phenotypes during Drosophila Oogenesis
Previous work has suggested that Su(dx) is involved in follicle cell production during oogenesis since it was found to be a dominant enhancer of the daughterless mutant phenotypes affecting egg chamber separation [25].However, the consequences of disrupting Su(dx)'s function alone in oogenesis have not been investigated.Su(dx) was found, by in situ hybridisation, to be expressed in a regulated manner in the ovary.A band of high expression was observed across the region 2a/b of the germarium, which includes the somatic stem cells and follicle cell precursors (Figure 2A-C).Su(dx) expression is low in the egg chambers emerging from the posterior of the germarium, but its expression is again up-regulated in stage 6 egg chambers when Notch is active to control the exit from mitosis.All Su(dx) alleles tested displayed an egg chamber packaging phenotype; however, there were qualitative differences between the null allele and other tested alleles.Su(dx) sp and Su(dx) sp /Su(dx) 56 displayed multi-follicle egg chamber phenotypes, in which a separation between adjacent egg chambers had not occurred, or the separation between egg chambers comprised of a bilayer of cells without an intervening stalk (Figure 2D,E,J-L,P).In both cases, the requisite number of polar cell clusters per egg chamber were found (Figure 2K), i.e., polar cells are normally found in pairs at the anterior and posterior ends of the egg chamber and so, if two egg chambers are unseparated, we expect four pairs to be present [26].These phenotypes were rarely seen in 3-or 6-day-old adult female ovaries but the frequency of affected egg chambers increased in the ovaries of 9-day-old adults (Figure 2P).These phenotypes were rescued by the presence of a single copy of the WT genomic rescue construct (Figure 2F,P).Even when egg chambers were properly separated, Su(dx) sp alleles also displayed shorter stalks, with fewer cells than normal located between the egg chambers (Figure 2N,O,Q).Contrary to our expectation, these phenotypes have previously been linked to reduced Notch activity.Consistent with the latter, we found that the sp/56 mutant phenotypes were enhanced by the loss of one copy of the Notch gene, and the phenotypes already appeared in 6-day-old female ovaries in this combination (Figure 2M,P).Su(dx) sp also displayed an increased number of FasIII-surrounded 16-cell cysts in the germarium, fewer egg chambers and an increase in the stage of the most recent egg chamber to exit from the posterior of the germarium (Figure 2G-I).Together, these phenotypes suggest a problem with supply of follicle cells, which leads to either a failure to separate adjacent egg chambers or decreases the production rate of correctly packaged egg chambers.Unlike in the wing and leg, the ovary phenotypes of the Su(dx) JD allele markedly differed from the Su(dx) sp allele, as the null allele flies displayed significantly longer stalks than the wild type, and this phenotype was also rescued by the Su(dx) wild-type genomic rescue construct (Figure 3A-C).The long stalk phenotype was temperature-dependent and increased in length at higher temperatures (Figure 3C).The egg chamber phenotypes also differed from those of Su(dx) sp .Instead of compound and unseparated egg chambers, we observed split cysts in which the normal complement of 16 germline cells were split across two adjacent incomplete follicles or split/fused egg chambers in which some of the germline cells of one egg chamber were split off from one cyst and incorporated into an adjacent chamber (Figure 3D-G).Complete egg chamber fusions that combined two complete cysts into a single egg chamber were also observed (Figure 3E).The splitting of cysts could already be observed within the germarium (Figure 3H).Cyst packaging phenotypes were also rescued by the Su(dx) WT genomic rescue construct.
The follicle cell lineage is maintained by a small number of FasIII-negative follicle stem cells (FSCs) that reside at the region 2a/2b boundary [27].In this position, the 16-cell germline cysts are forced into a single file and escort cells that wrap the germ line cysts are being replaced by follicle cell progenitors that will eventually form the somatic cell monolayer which encapsulates the egg chambers.In the first step of this replacement, a FSC sends out a long filamentous process that separates successive cysts.FSC division sometimes results in one daughter cell which crosses over the germarium to establish itself posterior to an FSC on the far side [28].FSCs proliferate to contribute follicle progenitors that surround the cyst as it progresses into region 3 of the germarium.Occasionally a cross-migrating cell moves anterior to the opposite FSC and displaces it from the niche, resulting in stem cell turnover.Notch signalling has been shown to be required for crossmigration and increased Notch activity increases the numbers of cross-migrating cells [28].By generating homozygous Su(dx) JD mutant mitotic clones in the stem cells we were able to image mutant cells in the process of cross-migration.In contrast to WT clones, Su(dx) JD clones appeared disorganised in the extension of these cellular processes, which varied in direction and appeared in some cases to be invading into a cyst, a likely precursory step leading to cyst splitting (Figure 4A-D).Clonal Notch ICD expression (constitutive Notch gain of function) also induced a disorganised over-extension of cell processes causing split-cyst and split/fused-cyst phenotypes with long intervening stalks (Figure 4E,F).Interestingly, when we expressed Notch RNAi in stem cell clones we also observed the splitting of cysts, but in this case we observed an under-extension of membrane processes which failed to completely cross over to the opposite side of the germarium before enwrapping partial cysts containing less than the normal 16 germline cells (Figure 4G,H).We observed similar outcomes in a Notch null mutant clone (Figure 4I).We have not observed split-cyst phenotypes in Su(dx) sp ovarioles, but we did observe an increased stem cell turnover after a scoring decline in the frequency of permanently marked mitotic clones [29], which was not observed for the Su(dx) JD allele (Figure 5).The Su(dx) sp mutant follicle cell phenotypes may therefore, in part, be due to earlier FSC defects affecting follicle cell supply.
Interestingly, when we expressed Notch RNAi in stem cell clones we also observe the splitting of cysts, but in this case we observed an under-extension of membrane pro cesses which failed to completely cross over to the opposite side of the germarium befor enwrapping partial cysts containing less than the normal 16 germline cells (Figure 4G,H We observed similar outcomes in a Notch null mutant clone (Figure 4I).We have not ob served split-cyst phenotypes in Su(dx) sp ovarioles, but we did observe an increased stem cell turnover after a scoring decline in the frequency of permanently marked mitoti clones [29], which was not observed for the Su(dx) JD allele (Figure 5).The Su(dx) sp mutan follicle cell phenotypes may therefore, in part, be due to earlier FSC defects affecting fo licle cell supply.

Misregulation of Notch Signalling Levels in the Wing and Ovary
The phenotypic characterisation of Su(dx) alleles demonstrated that the null allel phenotypes in the wing and leg were consistent with those previously published and in dicative of increased Notch activity.A gain of Notch function phenotype was also ob served for the null phenotype in the ovary.However, the Su(dx) sp allele showed ovar phenotypes indicative of a loss of Notch signalling, despite the same allele resulting in Notch gain of function during wing and leg development.Phenotypic outcomes can b difficult to interpret when multiple processes are affected.Therefore, to observe how

Misregulation of Notch Signalling Levels in the Wing and Ovary
The phenotypic characterisation of Su(dx) alleles demonstrated that the null allele phenotypes in the wing and leg were consistent with those previously published and indicative of increased Notch activity.A gain of Notch function phenotype was also observed for the null phenotype in the ovary.However, the Su(dx) sp allele showed ovary phenotypes indicative of a loss of Notch signalling, despite the same allele resulting in a Notch gain of function during wing and leg development.Phenotypic outcomes can be difficult to interpret when multiple processes are affected.Therefore, to observe how different Su(dx) mutant alleles affect Notch signalling directly, we investigated the Notch activity marked by fluorescent Notch signal reporters driven by the Notch response element NRE (Figure 6).In the germarium, Notch signalling was detected in cells just anterior to the FasIII-positive cells, in the location of the somatic stem cells, as observed previously [28].Su(dx) sp significantly reduced the Notch activity marked by the NRE reporter.In contrast, Su(dx) JD significantly increased Notch activity (Figure 6A,B).This effect was specific to Notch activity, as Su(dx) JD did not affect JAK-STAT signalling levels (Figure 6C,D).The latter is a pathway also involved in cyst packaging and egg chamber separation by follicle cells [30].We tested how the different alleles interacted with a null mutant of dx [21].The dx 152 allele alone had reduced Notch activity when measured by this reporter, and there was not any significant rescue of Notch signalling levels when in combination with Su(dx) sp (Figure 6A,B).However, Su(dx) JD rescued the Notch signalling loss in a dx mutant and this combination had a higher Notch activity than Su(dx) JD alone (Figure 6A,B).In the wing imaginal discs, both the Su(dx) sp and Su(dx) JD alleles increased Notch activation in the dorsal/ventral boundary compared to WT, in agreement with the adult phenotype data that indicated a gain of Notch function in the wings of both mutants (Figure 6E,F).The results further illustrate the complexity of the phenotypic outcomes of the Notch ubiquitin ligase regulators that tune Notch signalling levels up or down in different developmental contexts.We investigated how a human homologue of Su(dx), WWP1, affected human NOTCH3 signalling.Like Drosophila Notch, NOTCH3 has a PPXY motif in its intracellular domain which is a recognition motif for the WW domains found in Su(dx)-related proteins [31].We found that WWP1 showed a dosage-dependent regulation of NOTCH3 signalling, decreasing NOTCH3 activity when cotransfected at low ratios but increasing NOTCH3 activity at higher doses of WWP1 transfection (Figure 6G).Thus, both human and Drosophila Su(dx) proteins share the potential to act on Notch signalling in either a positive or negative manner.

Discussion
Here we report the first defined null allele for Su(dx).We found that Su(dx) JD behaves similarly to other alleles during wing development, exhibiting temperature-dependent Notch gain of function phenotypes that suppress vein cell fates, acting as a dominant suppressor of dx mutant wing phenotypes, and combining with a dx null allele to introduce ectopic leg joints, as previously described for other Su(dx) alleles [14].Su(dx) JD also acted as an enhancer of dx mutant wing vein phenotypes when flies raised at 14 • C, a role reversal previously reported for other Su(dx) mutant alleles at this low temperature of culture [14].We further report novel functions of Su(dx) during oogenesis, as it regulates cyst packaging into egg chambers and cyst integrity.In this tissue, however, the null allele deviated in its phenotypes from those of other Su(dx) alleles.While Su(dx) JD exhibited the Notch gain of function outcomes of increased stalk lengths and split cysts, the Su(dx) sp and Su(dx) 56 phenotypes reflected their reduced Notch function through short stalks and compound egg chambers.Direct examinations of the Notch signalling levels in vivo, using Notchspecific GFP reporter constructs, were in agreement with the loss or gain of Notch function phenotypic outcomes seen in both the wing and ovary.
Our observations likely reflect the complexity of the regulatory networks that tune Notch signalling levels up and down through ligand-dependent and independent means, and this context dependency appears likely to extend to human NOTCH regulation.The overall outcome of a particular mutation will therefore depend on the normal balance of these contributions, which differs in different developmental contexts.Su(dx) sp carries a seven amino acid in-frame mutation in its catalytic HECT domain [8].Immunostaining showed this allele was expressed and hence it likely retains partial function.The sp allele has been characterised as an antimorph as it can compete with WT Su(dx) for interactions with Notch.It is probable, therefore, that in the ovary environment, the Su(dx) sp protein is still active to sequester Notch from ligand-dependent signalling and this is not compensated for by any increase in ligand-independent activity.Indeed, combinations of Su(dx) sp and dx mutations did not restore Notch signal reporter expression, in contrast to the situation in the wing, where the same mutant combination restored WT wing development.In the latter case, Su(dx) sp can cause increased Notch activity via a ligand-independent, Dx-dependent mechanism.In contrast, the null allele produces a gain of function in both wing and ovary environments.We found that, in wing development, a dx mutation suppresses the gain of function phenotype of the Su(dx) JD null allele, indicating increased activity through a Dxdependent route.In the ovary, however, combining Su(dx) JD and dx mutants enhances the increased Notch signalling activity, suggesting that increased ligand-dependent signalling is the dominant contributor to the Notch gain of function phenotype of this combination in the ovary.All Su(dx) allele phenotypes were rescued by the introduction of a genomic rescue construct and so the discrepancies between the different allele phenotypes in the ovary cannot be attributed to any second site mutations.A limitation of this study is that we do not understand at the molecular level why the Su(dx) sp phenotypic outcomes are different in these different tissue contexts.Most likely, subtle differences in the trafficking pathways in which Notch is routed are responsible for these heterogenous outcomes and further detailed studies of Notch localisation are needed.
Our study further uncovered a new role for Su(dx) in regulating Notch signalling levels in order to properly package germline cysts into the egg chambers.Cyst packaging is a precisely controlled process [28,32].After four germ line cell divisions, as it reaches the region 2a/b border, the 16-cell cyst is comprised of 15 nurse cells and a single oocyte, interconnected through cytoplasmic bridges called ring canals.Anterior to region 2a, the cyst is enwrapped by somatic cells called escort cells.As the cyst moves posteriorly, these escort cells are displaced and the cyst becomes surrounded by FasIII-expressing follicle cells.The latter are derived from somatic stem cells located at the 2a/2b border, recognisable from their oval or triangular morphology and lack of FasIII expression [28,33,34].The number of stem cells present has been a matter of debate in the literature [33,35], but recent work indicates the number is most likely between 2 and 4 active stem cells located either side of the germarium, which is argued to be bilaterally symmetrical [27].FSC daughter cells can either produce a single cross-migrating cell that moves across the anterior side of the cyst and proliferates to contribute to follicle cells in the anterior half of the egg chamber, or a posterior migrating cell which moves posteriorly and begins enwrapping the posterior face [28,36].Alternating between these two outcomes is thought to result in each egg chamber being enwrapped by the progeny of two bilaterally located stem cells.Notch signalling has previously been shown to be active in FSCs and acts to promote cross-migration [28].Using positively labelled clones, we observed that marked stem cells produce a long filamentous process that crosses over the width of the germarium, likely as a precursor to the production of a cross-migrating cell following FSC division.To gain insight into the origin of the split-cyst phenotype, we generated FSC mitotic clones homozygous for the Su(dx) JD mutant.Germaria were observed with the disorganised extension of cellular processes, which varied in number and direction, arising from stem cells, stem cell progeny and cross-migrating cells.Cytoplasmic processes were observed that appeared to be in the process of invading between cysts.When we expressed the constitutive active Notch intracellular domain in FSC-derived mitotic clones, we also observed a splitting of cysts and similar misregulation of cyst enwrapment.Interestingly, we found that Notch RNAi expression and the stem cell clones of a Notch null mutant also generate split-cyst phenotypes.In this case, this likely results from a loss of cross-migrating cells and incomplete cytoplasmic extensions.Thus, the precise tuning of Notch activity is essential to properly maintain this critical step in egg chamber production.
Notch signalling has previously been shown to be necessary to regulate egg chamber separation subsequent to this initial enwrapment by follicle cells [30,37].When egg chambers emerge from the posterior of the germaria they are each separated by around six linearly located stalk cells which adjoin the egg chambers through the polar cells that mark the posterior and anterior of each egg chamber.Notch promotes stalk formation and a loss of Notch signalling results in egg chambers that lack an intervening stalk and are separated only by an epithelial bilayer or are compound egg chambers in which multiple cysts are present.We observe similar phenotypes in the ovaries of Su(dx) sp flies, consistent with their reduced Notch activity.The outcome of this allele results in decreased egg chamber production, reflected in their shorter ovarioles.We also observed a backup of 16-cell germline cysts in the germarium, arrested at the FasIII-enwrapped stage, consistent with an insufficient follicle cell supply.We investigated whether decreased follicle cell production might be reflected by decreased stem cell survival and found that Su(dx) sp , but not Su(dx) JD , stem cell mutant clones were lost at a higher frequency compared to wild-type clones.Notch signalling is not thought to be required for stem cell survival.Although previous work found that Mastermind, a key transcriptional coactivator in the Notch pathway, is required for stem cell survival, this was discovered to be due to a non-canonical function of Mastermind downstream of Hedgehog signalling [29].Previous work, using overexpressed WT and dominant negative Su(dx), has shown that it can target Patched for lysosomal degradation [38].Since Patched is a negative regulator of Hedgehog, it is possi-ble that Su(dx) sp mutants act in the stem cells through Ptc accumulation to down-regulate Hedgehog.The overall phenotype of Su(dx) sp in the ovary may therefore result from the summation of outcomes across these different pathways.
In conclusion, our results highlight the new roles of Su(dx) in oogenesis and illustrate its importance in the precise tuning of Notch activity in different developmental contexts.The core Notch pathway is essentially a simple mechanism, lacking amplification steps or kinase cascades.To be deployed in different developmental contexts Notch requires tunings in its amplitude, duration and spatial pattern in different ways.Su(dx) represents one of a multiplicity of regulatory processes that have been uncovered that provide the necessary nuances of Notch regulation that are needed for the proper functioning of such a pleitropic signalling mechanism within the many tissues and cell types in which it functions.Defining a null allele of Su(dx) is a step forward in uncovering the full functions of Su(dx) in development and tissue homeostasis, but our conclusions may yet be limited by genetic redundancy.It is important, therefore, to address how the functions of Su(dx) overlap with other Nedd4 family members in the fly genome to fully understand the complete physiological range of its activity.

Figure 1 .
Figure 1.Generation of a defined Su(dx) null allele.(A) map of genomic region spanning Su locus, showing known splice forms.Thick lines represent exons, thin lines representintrons.lines are mRNA coding regions and pink are non-coding sequences.Position of transposon used P-element excision to create deletion is indicated with arrowhead.Dotted line below indicate gion deleted in Su(dx) JD allele.Red line indicates position of non-coding RNA transcript.(B quence across deletion breakpoint of the Su(dx) JD allele.Underlined region indicates WT sequ that lies 5′ and 3′ of deletion endpoints.Nucleotide numbers of breakpoints from 2nd chromos genomic sequence are indicated.(C,D) Anti-Su(dx) immunostaining (purple) of CD8-GFP positi marked Su(dx) JD (C,C') and Su(dx) sp (D,D') mitotic clones in stage 8 egg chamber.Green stai indicates CD8-GFP-expressing cells, which are homozygous for Su(dx) mutants.Su(dx) JD mu

Figure 1 .
Figure 1.Generation of a defined Su(dx) null allele.(A) map of genomic region spanning Su(dx) locus, showing known splice forms.Thick lines represent exons, thin lines representintrons.Blue lines are mRNA coding regions and pink are non-coding sequences.Position of transposon used for P-element excision to create deletion is indicated with arrowhead.Dotted line below indicates region deleted in Su(dx) JD allele.Red line indicates position of non-coding RNA transcript.(B) Sequence across deletion breakpoint of the Su(dx) JD allele.Underlined region indicates WT sequence that lies 5 and 3 of deletion endpoints.Nucleotide numbers of breakpoints from 2nd chromosome genomic sequence are indicated.(C,D) Anti-Su(dx) immunostaining (purple) of CD8-GFP positively marked Su(dx) JD (C,C') and Su(dx) sp (D,D') mitotic clones in stage 8 egg chamber.Green staining indicates CD8-GFP-expressing cells, which are homozygous for Su(dx) mutants.Su(dx) JD mutant cells do not

Figure 2 .
Figure 2. Age-dependent ovary phenotypes of Su(dx) mutant alleles.(A) Schematic diagram of ovariole.(B) Germarium region showing position of germline and follicle stem cells and switch in

Biomolecules 2024, 14 , 522 11 of 20 Figure 3 .
Figure 3. Ovary phenotypes of Su(dx) JD .(A) At 27 °C, Su(dx) JD has increased stalk length (arrows).(B) The Su(dx) JD stalk length phenotype is reduced by the presence of a genomic rescue (GR) construct of WT Su(dx).(C,D) Quantification of stalk length (C) and cyst packaging phenotypes (D) at 14 days post eclosion.Genotypes, temperature and the number of ovarioles scored are indicated.The mean stalk lengths in (C) are calculated as the combined mean of stalks located anterior and posterior to stage 4 egg chambers.(E-H) Examples of cyst packaging phenotypes of two-week-old flies, homozygous for the Su(dx) JD allele.(E) An ovariole containing a split cyst (white bar) in which the full complement of germline cells is split between two egg chambers and a fused cyst (arrow) containing more than the normal 16-cell germline cells.(FasIII, red; anti-Discs large, green; and DAPI, blue).(F) Example of a split cyst stained with phalloidin (greyscale) to mark ring canals.Numbers of nurse cells (NC) and oocyte (OO) are indicated.(G) Fused/split cysts in which the total

Figure 3 .
Figure 3. Ovary phenotypes of Su(dx) JD .(A) At 27 • C, Su(dx) JD has increased stalk length (arrows).(B) The Su(dx) JD stalk length phenotype is reduced by the presence of a genomic rescue (GR) construct of WT Su(dx).(C,D) Quantification of stalk length (C) and cyst packaging phenotypes (D) at 14 days post eclosion.Genotypes, temperature and the number of ovarioles scored are indicated.The mean stalk lengths in (C) are calculated as the combined mean of stalks located anterior and posterior to stage 4 egg chambers.(E-H) Examples of cyst packaging phenotypes of two-week-old flies, homozygous for the Su(dx) JD allele.(E) An ovariole containing a split cyst (white bar) in which the full complement of germline cells is split between two egg chambers and a fused cyst (arrow) containing more than the normal 16-cell germline cells.(FasIII, red; anti-Discs large, green; and DAPI, blue).(F) Example of a split cyst stained with phalloidin (greyscale) to mark ring canals.Numbers of nurse cells (NC) and oocyte (OO) are indicated.(G) Fused/split cysts in which the total complement of 32 germline cells is distributed incorrectly across two adjacent egg chambers, each with one oocyte (OO).* indicates locations of oocyte in F and G. (H) Germarium stained with anti FasIII (red) and phalloidin (greyscale), arrows indicate a split cyst already present in region 3 of the germarium.

Figure 4 .
Figure 4. Notch gains and losses of function promote cyst mispackaging in the germarium.(A) CD8-GFP (green)-expressing, positively marked WT mitotic clone, originating in a FSC (arrowhead).A long cellular extension spans the width of the germarium.Anti-FasIII marks the follicle cells (purple).(B) Su(dx) JD mitotic clone containing a CD8-GFP-expressing FSC with multiple cell extensions (arrowheads), one of which appears to be in the process of splitting a cyst (arrow).(C) A larger marked Su(dx) JD clone showing a cross-migrating stem cell daughter cell (arrow) from which a cellular process is invading into a cyst (*) Arrowhead marks location of FSC.(D-D") A marked Su(dx) JD FSC has given rise to a number of progeny cells which are each extruding cellular processes in different directions (arrowheads).Three deconvolved sections are shown from a single germarium spaced 60 µm apart.(E) A CD8-GFP-marked Notch-ICD-expressing mitotic clone arising from a FSC), which has produced a long cellular process initially in an aberrant direction, and then extending across the germarium, which has enwrapped a partial cyst (arrow).(F) Marked clone of cells originating in germarium (arrowhead) expressing Notch ICD generates long stalks separating split cysts (arrow).(G) CD8-GFP-marked Notch-RNAi-expressing stem cell with extension that has failed to cross the germarium and instead has partially enwrapped a cyst (arrow).(H) A Notch-RNAiexpressing mitotic clone associated with split-and fused-cyst phenotypes.Numbers of nurse cells and oocytes are indicated.(I) A Notch null mutant mitotic clone with cellular process that has failed to extend across the germarium and enwraps a partial cyst (arrow).All scale bars 20 μm.

Figure 4 .
Figure 4. Notch gains and losses of function promote cyst mispackaging in the germarium.(A) CD8-GFP (green)-expressing, positively marked WT mitotic clone, originating in a FSC (arrowhead).A long cellular extension spans the width of the germarium.Anti-FasIII marks the follicle cells (purple).(B) Su(dx) JD mitotic clone containing a CD8-GFP-expressing FSC with multiple cell extensions (arrowheads), one of which appears to be in the process of splitting a cyst (arrow).(C) A larger marked Su(dx) JD clone showing a cross-migrating stem cell daughter cell (arrow) from which a cellular process is invading into a cyst (*) Arrowhead marks location of FSC.(D-D") A marked Su(dx) JD FSC has given rise to a number of progeny cells which are each extruding cellular processes in different directions (arrowheads).Three deconvolved sections are shown from a single germarium spaced 60 µm apart.(E) A CD8-GFP-marked Notch-ICD-expressing mitotic clone arising from a FSC), which has produced a long cellular process initially in an aberrant direction, and then extending across the germarium, which has enwrapped a partial cyst (arrow).(F) Marked clone of cells originating in germarium (arrowhead) expressing Notch ICD generates long stalks separating split cysts (arrow).(G) CD8-GFP-marked Notch-RNAi-expressing stem cell with extension that has failed to cross the germarium and instead has partially enwrapped a cyst (arrow).(H) A Notch-RNAiexpressing mitotic clone associated with split-and fused-cyst phenotypes.Numbers of nurse cells and oocytes are indicated.(I) A Notch null mutant mitotic clone with cellular process that has failed to extend across the germarium and enwraps a partial cyst (arrow).All scale bars 20 µm.

Figure 5 .
Figure 5. Su(dx) sp mutation is associated with increased FSC turnover.(A) Without the induction o heat shock, mitotic clones are not induced and all cells express a nuclear GFP marker.(B) Ovariol after heat shock, showing negatively marked follicle cell clones.(C) % of ovarioles exhibiting nega tively marked Su(dx) sp mutant clones shows a greater decline over a 3-week time course than W clones.This decline is suppressed in a heterozygous dx 152 background.(D) Turnover of Su(dx) JD mu tant stem cells is not significantly different compared to WT stem cells.

Figure 5 .
Figure 5. Su(dx) sp mutation is associated with increased FSC turnover.(A) Without the induction of heat shock, mitotic clones are not induced and all cells express a nuclear GFP marker.(B) Ovariole after heat shock, showing negatively marked follicle cell clones.(C) % of ovarioles exhibiting negatively marked Su(dx) sp mutant clones shows a greater decline over a 3-week time course than WT clones.This decline is suppressed in a heterozygous dx 152 background.(D) Turnover of Su(dx) JD mutant stem cells is not significantly different compared to WT stem cells.

Biomolecules 2024, 14 , 522 16 of 20 Figure 6 .
Figure 6.Notch signalling is misregulated by Su(dx) alleles in the ovary and wing imaginal discs.(A,B) Quantification of Notch signalling via the expression of NRE-GFP reporter in cells just anterior to the region of FasIII-expressing cells where the FSCs are located.Images below the graph correspond to the indicated genotypes.Arrows indicate examples of GFP-expressing cells.All images were exposed and processed using same parameters.Anti-FasIII staining in purple.(C,D) Quantification of JAK-STAT signalling via the expression of the 10× STAT reporter in WT and Su(dx) JD

Figure 6 .
Figure 6.Notch signalling is misregulated by Su(dx) alleles in the ovary and wing imaginal discs.(A,B) Quantification of Notch signalling via the expression of NRE-GFP reporter in cells just anterior