Anti-Microbial Activities of Mussel-Derived Recombinant Proteins against Gram-Negative Bacteria

Many anti-microbial peptides (AMPs) and pro-apoptotic peptides are considered as novel anti-microbial agents, distinguished by their different characteristics. Nevertheless, AMPs exhibit certain limitations, including poor stability and potential toxicity, which hinder their suitability for applications in pharmaceutics and medical devices. In this study, we used recombinant mussel adhesive protein (MAP) as a robust scaffold to overcome these limitations associated with AMPs. Mussel adhesive protein fused with functional peptides (MAP-FPs) was used to evaluate anti-microbial activities, minimal inhibitory concentration (MIC), and time-kill kinetics (TKK) assays against six of bacteria strains. MAP and MAP-FPs were proved to have an anti-microbial effect with MIC of 4 or 8 µM against only Gram-negative bacteria strains. All tested MAP-FPs killed four different Gram-negative bacteria strains within 180 min. Especially, MAP-FP-2 and -5 killed three Gram-negative bacteria strain, including E. coli, S. typhimurium, and K. pneumoniae, within 10 min. A cytotoxicity study using Vero and HEK293T cells indicated the safety of MAP and MAP-FP-2 and -3. Thermal stability of MAP-FP-2 was also validated by HPLC analysis at an accelerated condition for 4 weeks. This study identified that MAP-FPs have novel anti-microbial activity, inhibiting the growth and rapidly killing Gram-negative bacteria strains with high thermal stability and safety.


Introduction
Infectious diseases, such as SARS-CoV-2, among other viruses, have gained major attention owing to large-scale pandemics, which can severely affect human quality of life and be exacerbated by antibiotic resistance [1,2].A great need exists for effective antivirals and antimicrobials to impede the transmission of infectious diseases [2,3].Antiviral and antimicrobial agents are commonly applied on safeguarding materials ranging from consumer goods to medical devices to mitigate the risk of public outbreaks.Although many substances exhibit robust antiviral or antimicrobial activities, a prevailing concern is their unfavorable therapeutic index and resistance [4,5].Throughout prokaryotes, plants, and vertebrates, antimicrobial peptides (AMPs) are important biomolecules participating in the innate immune response and host defense against infections [6][7][8].AMPs (typical length of <200 amino acid residues) are secreted by host cells and act as bacteriostatic or bactericidal agents [9].They often exhibit a distinctive composition featuring cationic and hydrophobic residues that represent amphiphilic structures.Based on their compositional and structural characteristics, AMPs interact with and disrupt the bacterial plasma membranes bearing negative charges in their outer layers [10,11].Given their diversity and potential as antimicrobial agents, active research is being conducted on the use of AMPs in the therapeutic, medical, and consumer industries.Some AMPs with strong and broad-spectrum antimicrobial activities have been developed for use as antimicrobial substances and antibiotics.FDA-approved AMP-derived antibiotics are used to treat various diseases, depending on their specific characteristics and antimicrobial spectrum.For example, daptomycin, a cyclic lipopeptide sourced from Streptomyces roseosporus, is used to treat Staphylococcus aureus-associated skin infections [12,13].Vancomycin, a glycopeptide originating from Amycolatopsis orientalis, plays a pivotal role in combatting life-threatening Gram-positive bacterial infections, such as methicillin-resistant S. aureus (MRSA) [14].Nonetheless, the practical application of AMPs is limited by their half-life, cytotoxicity, and production costs [15,16].Representative AMP-derived antibiotics, including daptomycin, vancomycin, and telavancin, are susceptible to rapid structural degradation owing to instability and high cytotoxicity when administered at high doses, which is often required in clinical treatment.These limitations can be overcome by using recombinant proteins derived from natural materials as scaffolds.
Mussels have a remarkable ability to adhere to surfaces with great stability, even under harsh conditions, such as high pressures and salinity.MAPs are characterized by good biocompatibility and biodegradability, making them useful scaffolds for recombinant proteins [17][18][19][20].Among the recombinant MAP scaffold proteins, fp-151 (derived from Mytilus edulis) is composed of six mussel foot protein 1 decapeptide repeats (fp1) at each mussel terminus of foot protein 5 (fp5) and commonly employed for its high yield, easy purification, and cost-effective manufacturing [21].Extracellular-matrix-derived peptidefused MAPs can further be used to regulate cell attachment and growth [22,23].However, the antimicrobial activities of AMP-fused MAPs have not yet been examined.In this study, we constructed AMP-fused MAPs and determined their antimicrobial performance against various bacteria in vitro.

Recombinant MAP-Fused Functional Peptides (MAP-FPs)
Many different proteins, which are derived from living organisms such as metabolites and components of some species, have been tried as biocompatible materials to apply pharmaceutics and medical devices.Although many AMPs were developed in a few decades, there were some limitations, such as low stability and cytotoxicity.To overcome the limitations of AMPs, MAP-derived recombinant protein system was used to give stability and safety to AMPs.Since recombinant mussel adhesive proteins, MAP fp-151, have been developed as biomaterial, having stability and cost-effective manufacturing was used as a scaffold for recombinant AMPs.MAP fp-151 was composed as fp1-fp5-fp1, derived from Mytilus edulis [23].To make MAP-fused functional peptide for anti-microbial application, a number of antibiotic peptides originating from AMPs and proapoptotic peptides were fused to C-terminal of MAP fp-151 (Figure 1a).Anti-microbial-activity-associated peptides, including AKRHHGYKRKFH from anti-microbial histatin 5-derived P-113 (MAP-FP-1) [24], LKKLAKLALAF from anti-cancer peptide (MAP-FP-2) [25], THRPPMWSPVWP from transferrin receptor binding peptide (MAP-FP-3) [26,27], ILRWPWWPWRRK from antimicrobial omiganan (MAP-FP-4) [28,29], and KLAKLAKKLAKLAK from proapoptotic/antimicrobial KLAK peptide (MAP-FP-5) [30,31], were selected for MAP-fused functional peptides (MAP-FPs) (Table 1).Recombinant MAP-FPs were overexpressed and purified as previously described [21].Since overexpressed recombinant MAP-FPs were aggregated as an inclusion body in E. coli, they lost anti-microbial activity and could be purified.Purified recombinant MAP-FPs showed >80% purity, as determined by SDS-PAGE (Figure 1b).

Determination of Minimal Inhibitory Concentrations (MICs) of MAP-FPs
MICs of MAP-FPs and Magainin I were determined against standard laboratory microbial strains, including four Gram-negative and two Gram-positive strains, using the broth microdilution method.The growth inhibitory activities of MAP-FPs were assessed at concentrations of 0.25-8 µM against Gram-negative bacteria, including Escherichia coli,

Determination of Minimal Inhibitory Concentrations (MICs) of MAP-FPs
MICs of MAP-FPs and Magainin I were determined against standard laboratory microbial strains, including four Gram-negative and two Gram-positive strains, using the broth microdilution method.The growth inhibitory activities of MAP-FPs were assessed at concentrations of 0.25-8 µM against Gram-negative bacteria, including Escherichia coli, Salmonella typhimurium, Klebsiella pneumoniae, and Citrobacter freundii, and Gram-positive bacteria, including Staphylococcus aureus and Bacillus cereus (Table 2).MAP-FPs and Magainin I at 4-8 µM inhibited the growth of Gram-negative strains.However, neither the MAP-FPs nor Magainin I inhibited the growth of Gram-positive strains.Interestingly, MAP, used as the backbone and adhesive domain for the surface coating, also inhibited the growth of the Gram-negative E. coli and S. typhimurium strains.Compared to the other MAP-FPs, MAP-FP-2, -4, and -5 showed a two-fold higher growth inhibitory potency against E. coli and S. typhimurium.These results demonstrate that 4-8 µM of MAP and MAP-FPs could inhibit the growth of susceptible Gram-negative bacteria.

Time-Dependent Microbicidal Activity of MAP-FPs
To check the time-dependent microbicidal activity of MAP-FPs, TKK assay was performed on six microbial strains.TKK of MAP-FPs was investigated using the CFU counting method after indicated times, 0, 10, 30, 60, and 180 min with 1 × MIC of MAP-FPs.Since some MICs have not yet been determined, for all MAP-FPs against Gram-positive bacteria and MAP against K. pneumoniae and C. freundii, 8 µM was used as 1 × MIC of MAP-FPs and Magainin I. Time-kill kinetics of 1 × MIC MAP and MAP-FPs showed all four Gram-negative bacteria were killed within 180 min, but Magainin I did not (Figure 2a-d).S. typhimurium and K. pneumoniae were killed within 60 min with MAP and MAP-FPs (Figure 2b,c).Similar to the findings of a previous MIC study, MAP-FP-2 and -5 showed the fastest antimicrobial effects and could kill E. coli, S. typhimurium, and K. pneumoniae within 30 min (Figure 2a-c).Although none of the 1 × MIC MAP-FPs killed S. aureus (Figure 2e), MAP-FP-5 killed B. cereus within 180 min (Figure 2f).A 1/4 × MIC of MAP-FPs killed all Gram-negative bacteria except C. freundii within 180 min (Figure S1a-f).Compared with the TKK of 1 × MIC results, it was observed that even smaller amounts of MAP-FPs also killed susceptible bacteria within 180 min.These results demonstrate the direct microbicidal effects of MAP and MAP-FPs against susceptible Gram-negative bacteria.

Cytotoxicity of the MAP-FPs
To investigate the cytotoxicity of MAP-FPs, Vero, monkey kidney epithelial cells, and HEK293T, human kidney epithelial cells, cell lines were used.Two normal kidney epithelial cells were treated with MAP-FPs in a dose-dependent manner.After 24 h of incubation, cell viability was measured to determine the 50% cytotoxic concentration (CC50) of MAP-FPs to normal cells.Although MAP showed good safety even at 12 µM, MAP-FP-1, -4, and -5, derived from P-113, omiganan, and KLA proapoptotic peptide, showed a CC50 of 8.3, 5.8, and 7.3 µM, respectively, in only the Vero cell line.Although some MAP-FPs were toxic at high concentrations, MAP-FP-2 and -3 demonstrated good safety at 12 µM (Table 3 and Figure S2a-f).
Table 3. Cytotoxicity of the MAP-FPs in mammalian cells.Vero and HEK293T cells were used for cytotoxicity of MAP-FPs.Cells (5,000 cells/well) were seeded and then treated with different concentration of MAP-FPs for 24 h.After 24 h of incubation, cytotoxicity was determined by CCK-8

Cytotoxicity of the MAP-FPs
To investigate the cytotoxicity of MAP-FPs, Vero, monkey kidney epithelial cells, and HEK293T, human kidney epithelial cells, cell lines were used.Two normal kidney epithelial cells were treated with MAP-FPs in a dose-dependent manner.After 24 h of incubation, cell viability was measured to determine the 50% cytotoxic concentration (CC 50 ) of MAP-FPs to normal cells.Although MAP showed good safety even at 12 µM, MAP-FP-1, -4, and -5, derived from P-113, omiganan, and KLA proapoptotic peptide, showed a CC 50 of 8.3, 5.8, and 7.3 µM, respectively, in only the Vero cell line.Although some MAP-FPs were toxic at high concentrations, MAP-FP-2 and -3 demonstrated good safety at 12 µM (Table 3 and Figure S2a-f).

Thermal Stability of the MAP-FPs
Since MAP-FP-2 exhibited anti-microbial activity without cytotoxicity in normal mammalian cells among MAP-FPs, thermal stability of MAP and MAP-FP-2 was analyzed using RP-HPLC.For thermal stability, MAP and MAP-FP-2 were incubated at 42 • C for 14 and 28 days, and then stability was determined by RP-HPLC.MAPs, incubated at 42 • C, showed 100.02 ± 0.19% and 96.36 ± 0.3% stabilities after 14 and 28 days, respectively.Stabilities of MAP-FP-2 were exhibited as 90.89 ± 1.44% and 91.33 ± 2.6% after 14 and 28 days incubation at 42 • C (Table 4).Although MAP-FP-2 showed a 9% decrease in stability compared to MAP, its stability did not decrease in a time-dependent manner, and its antimicrobial activity was sustained (Table 4).Based on these results, MAP and MAP-FP-2 exhibit strong thermal stability.C for 14 and 28 days.After incubation, MAP and MAP-FP-2 were analyzed using RT-HPLC.To check anti-microbial activity, the MIC of incubated MAP and MAP-FP-2 against E. coli was determined by the microdilution method.

Discussion
There is an urgent global need for new strategies and drugs to treat anti-microbialresistant bacterial infections.While the presence of antibiotic-resistant strains does not render all existing antibiotics completely useless, it significantly reduces the survival rates of individuals infected with antibiotic-resistant strains.To eliminate antibiotic-resistant bacteria, novel anti-microbial agents should be developed.The traditional antibiotic development pipeline has been unable to address the clinical issues associated with antimicrobial resistance.Thus, the development of novel classes of antibiotics with new targets or modes of action is necessary.New anti-microbial alternatives such as AMP are especially promising because of their potent and broad anti-microbial activity with their slow rate inducing resistance in bacteria [32,33].In this study, AMPs exhibiting antimicrobial, anticancer, and proapoptotic activities were fused with a biocompatible MAP scaffold to produce a novel antimicrobial MAP-FP, serving as a functional peptide domain.The manufactured MAP and MAP-FPs exhibited strong antimicrobial activities against specific Gram-negative bacteria.Some antibiotics, including aztreonam, cephalosporin, and polymyxin B, also exhibit antimicrobial activities against Gram-negative bacteria.In particular, similar to MAP-FPs, aztreonam did not show anti-microbial activity against Gram-positive bacteria, but only against Gram-negative bacteria.Similar to Gram-negative-specific antibiotic mechanisms, it disrupted the Gram-negative cell wall by binding enriched lipopolysaccharide (LPS) or synthesis enzyme; MAP-FPs are also expected to have a Gram-negative cell wall targeting mechanism [34][35][36].
MAP-FPs not only exhibit unique anti-microbial activity against Gram-negative bacteria but also have favorable therapeutic index and physicochemical properties, such as high thermal stability and adhesiveness.Unlike synthetic adhesives, MAPs possess distinctive properties; mussel filaments (byssus) can attach to inorganic surfaces in the sea without degradation or alteration [37].This high stability is also reflected in MAP-FPs, which remained structurally stable at 42 • C over 4 weeks, far surpassing the rapid degradation of peptides under similar conditions.This highlights the potential of MAPs as scaffold materials for attaching to inorganic surfaces and incorporating with specific peptides as a functional peptide domain for various applications.Based on these physicochemical properties of MAP-FPs, MAP-FPs possess promise as anti-microbial coating materials against Gram-negative bacteria like as E. coli, S. typhimurium, and P. aeruginosa in the medical devices and consumer goods.Especially, E. coli and P. aeruginosa are representative bacteria to make biofilm on the surface of medical devices and consumer goods [38,39].Biofilms, having resistance to anti-microbial agents and host immunity, are the product of microbial cells sticking to each other and adhesive surfaces.Because biofilm is not easily removed by common sterilization and biofilm formation takes some time, biomedical devices need to be coated with an anti-microbial and stable agent to suppress biofilm formation [40].Since not only MAP-FPs have stable and adhesive properties based on MAP but also have anti-microbial activity based on anti-microbial peptides, MAP-FPs could be good candidates for anti-microbial/biofilm coating agents.Further studies are needed to validate the anti-biofilm activity and adhesiveness to elucidate the practical applications in consumer products and medical devices.

Preparation of Recombinant Proteins
MAP fp-151, cloned into pET-22b(+) vector (Novagen, Darmstadt, Germany), was used as the backbone vector [2].cDNAs encoding anti-microbial peptides or cell lytic peptides were subcloned into C-terminal of MAP fp-151 at sites HindIII and XhoI restriction enzymes and expressed in E. coli Rosetta (DE3) (Novagen, Darmstadt, Germany) by IPTG (Sigma-Aldrich, St. Louis, MO, USA) induction.MAP-fused functional peptides (MAP-FPs) were purified as previously described [21].Briefly, induced E. coli was lysed using a high-pressure homogenizer.MAP-FPs were extracted using 25% (v/v) acetic acid from the inclusion body of lysates.Extracts were dialyzed in phosphate-buffered saline (PBS) containing 20% glycerol using dialysis tubing (Sigma-Aldrich, St. Louis, MO, USA).Purified MAP-FPs were freeze-dried and then stored at −80 • C.

Minimal Inhibitory Concentrations (MICs) Determinations
The minimal inhibitory concentrations (MICs) of the MAP-FPs were determined using the broth microdilution method in Cation-adjusted Mueller Hinton Broth (CAMHB, MB Cell, Seoul, Republic of Korea) against all six strains following the guidelines of the Clinical and Laboratory Standard Institute (CLSI).The M7-A9 protocol was used for MIC assay.Briefly, E. coli, S. typhimurium, K. pneumoniae, C. freundii, and B. cereus were incubated in nutrient broth, and S. aureus was incubated in Tryptic soy broth overnight at 37 • C.Then, six strains of bacteria were grown overnight at 37 • C, 150 RPM in the CAMHB and were diluted with CAMHB to achieve 0.5 McFarland turbidity standard (1.5 × 10 8 CFU/mL, OD 600 : 0.07~0.08)using a microplate reader.Next, a total of 100 µL of the 0.5 McFarland solution was added to 9900 µL of CAMHB (1/100 dilution, 1.5 × 10 6 CFU/mL).To make final inoculum as 1.5 × 10 5 CFU/mL, 10 µL of bacterial inoculum containing 1.5 × 10 6 CFU/mL cells was added into the plate (SPL, Gyeonggi-do, Republic of Korea) wells containing 90 µL of serially diluted peptide samples (final concentrations ranging from 0.25 to 8 µM) and incubated at 37 • C for 18 h.The inhibition of microbial growth was determined by cell counting kit-8 (CCK-8) reagent (Dojindo, Kumamoto, Japan).Incubated broth of each well was diluted 10-fold with PBS using a multi-channel pipette.A volume of 10 µL of CCK-8 reagent was added to each well and incubated for 90 min.The absorbance at 450 nm wavelength was measured using the microplate reader (BioTek Synergy, Winooski, VT, USA, S1LFA).All measurements were performed in triplicate.

Figure 1 .
Figure 1.Schematic representation for MAP-FPs.(a) Schematic diagram of construction for MAP-FPs.(b) Electrophoresis analysis of purified recombinant MAP-FPs for purity.Purified recombinant MAP-FPs (5 µg) were loaded with SDS-PAGE and separated using electrophoresis.After electrophoresis, SDS-PAGE was stained with Coomassie blue dye.

Figure 1 .
Figure 1.Schematic representation for MAP-FPs.(a) Schematic diagram of construction for MAP-FPs.(b) Electrophoresis analysis of purified recombinant MAP-FPs for purity.Purified recombinant MAP-FPs (5 µg) were loaded with SDS-PAGE and separated using electrophoresis.After electrophoresis, SDS-PAGE was stained with Coomassie blue dye.

Table 1 .
Chemical properties of the MAP-fused functional peptides (MAP-FPs).

Table 1 .
Chemical properties of the MAP-fused functional peptides (MAP-FPs).
Sequence Molecular Weight Hydrophobic Residues (%) Net Charge at pH 7.0

Table 2 . Minimum inhibitory concentration of MAP-FPs against Gram-negative and -positive bacteria.
Microbials (1.5 × 10 5 CFU/mL), including E. coli, S. typhimurium, K. pneumoniae, C. freundii, S. aureus, and B. cereus, were incubated with MAP-FPs and Magainin I (concentration range 0.25~8 µM) in CAMHB.After 18 h of incubation, the growth inhibition of microbials was measured using CCK-8 reagent.A volume of 10 µL of CCK-8 reagent was added to each well and incubated plate for 90 min at 37 • C. Absorbance of 450 nm wavelength was determined using microplate reader.Data represent the result of the experiment performed in triplicate.n.d.means not determined.Data are presented as the mean ± standard deviation.

Table 3 . Cytotoxicity of the MAP-FPs in mammalian cells.
Vero and HEK293T cells were used for cytotoxicity of MAP-FPs.Cells (5000 cells/well) were seeded and then treated with different concentration of MAP-FPs for 24 h.After 24 h of incubation, cytotoxicity was determined by CCK-8 solution.A volume of 10 µL of CCK-8 reagent was added to each well and incubated plate for 90 min at 37 • C, 5% CO 2 .Data represent the result of the experiment performed in triplicate.