Metabolic Targets of Coenzyme Q10 in Mitochondria

Coenzyme Q10 (CoQ10) is classically viewed as an important endogenous antioxidant and key component of the mitochondrial respiratory chain. For this second function, CoQ molecules seem to be dynamically segmented in a pool attached and engulfed by the super-complexes I + III, and a free pool available for complex II or any other mitochondrial enzyme that uses CoQ as a cofactor. This CoQ-free pool is, therefore, used by enzymes that link the mitochondrial respiratory chain to other pathways, such as the pyrimidine de novo biosynthesis, fatty acid β-oxidation and amino acid catabolism, glycine metabolism, proline, glyoxylate and arginine metabolism, and sulfide oxidation metabolism. Some of these mitochondrial pathways are also connected to metabolic pathways in other compartments of the cell and, consequently, CoQ could indirectly modulate metabolic pathways located outside the mitochondria. Thus, we review the most relevant findings in all these metabolic functions of CoQ and their relations with the pathomechanisms of some metabolic diseases, highlighting some future perspectives and potential therapeutic implications.


Introduction
Ubiquinone or coenzyme Q (CoQ) is an endogenously synthesized vital molecule that is present in many unicellular and pluricellular organisms, the latter being mostly localized in the mitochondria. In mammalian cells, at least 14 proteins are needed to synthetize CoQ, and its biosynthesis starts with the formation of a 4-hydroxybenzoic acid (4-HB) head group and a lipophilic polyisoprenoid tail. Whereas the 4-HB is derived from tyrosine or phenylalanine, the polyisoprenoid tail is produced by addition of isopentenyl diphosphate molecules, derived from the mevalonate pathway, to farnesyl diphosphate or geranylgeranyl diphosphate in multiple steps catalyzed by the polyprenil diphosphate synthase. In human and mice, this enzyme is a heterotetramer and the two subunits are encoded by PDSS1 and PDSS2. Another enzyme, encoded by COQ2, mediates the conjugation of the benzoquinone ring to the side chain; while four others, encoded by COQ3, COQ5, COQ6 and COQ7, reside in the mitochondrial inner membrane and modify the benzoquinone ring of CoQ by reactions of methylation, decarboxylation and hydroxylation [1]. Moreover, four other proteins, encoded by COQ4, COQ8A, COQ8B and COQ9, seem to have different regulatory functions over other CoQ biosynthetic proteins [1]. In particular, COQ9 physically interacts with COQ7 and has the ability to bind some CoQ biosynthetic intermediates, including demethoxyubiquinone (DMQ), the substrate for COQ7 [2,3]. Furthermore, some other proteins (ADCK1, ADCK2, ADCK5 and PTC7p), may have the capacity to increase/reduce the CoQ biosynthetic rate by phosphorylating/dephosphorylating some oxidoreductase 1, or NADPH-CoQ reductase [17]. For all these functions in cell membranes, CoQ must be distributed among them and that distribution seems to be regulated by specific proteins [18,19].
In addition to this antioxidant capacity and redox regulation, which have been extensively reviewed in the literature, CoQ has other key metabolic functions in mitochondria, where its main biosynthetic process mostly occurs. Thus, this review is focused in describing the functional metabolic roles of CoQ in mitochondria and how, through those functions, CoQ can also influence other metabolic pathways outside of mitochondria. Particularly, this review provides an in-depth look at the metabolic pathways linked to a functional structure called the CoQ-junction ( Figure 1). As we will emphasize, all these processes have important physiological and pathophysiological implications.

CoQ in the OxPhos System
CoQ was first isolated by Professor Frederick Crane in 1957 in beef heart, describing the presence and function of CoQ in the mitochondrial respiratory chain. Since then, its proprieties as a mobile electron carrier in the mitochondrial respiratory chain and as a molecule with redox capabilities in the cell have been widely studied [20]. In mitochondria, CoQ is mainly localized in the inner mitochondrial membrane, where it accepts electrons from NADH through NADH ubiquinone oxidoreductase (CI), and/or from FADH 2 through succinate dehydrogenase (CII). Those electrons are then transferred to cytochrome c through CoQH 2 -cytochrome c reductase (CIII), and the cytochrome c transfers the electrons to the oxygen through cytochrome c oxidase (CIV). The transfer of electrons among the complexes is accompanied by the pumping of protons to the intermembrane space, generating a proton motive force that is used by the ATP synthase (CV) to produce the ATP. The transfer of electrons in the mitochondrial respiratory complexes is favored by the formation of super-complexes, a supramolecular organization that joins the mitochondrial individual complexes in one single structure, in which CoQ is an essential component [21]. Therefore, the complexes can be found individually or, varying in the number of complexes, organized in super-complexes, which encompass complexes I, III and IV. CII, however, has not been proven to be in association with any other complex [22,23]. Both individual complexes and super-complexes are functional, indicating that the organization in super-complexes has to provide some advantages over the individual complexes, i.e., better stability, lower ROS production, or a better mobilization of the electron transfer from the mobile carriers, CoQ or cytochrome c, to their targets [21]. For years, CoQ was thought to be free in the mitochondrial membranes in a homogeneous pool ready to be used by any enzyme that needed it [24]. However, more recently, it has been demonstrated that the supramolecular organization of complexes in super-complexes dynamically segments the CoQ molecules in: (1) a pool attached and engulfed by the super-complexes I + III, exclusively dedicated to the oxidation of NADH (CoQ NADH pool), and (2) a free pool, available for CII or any other enzyme that uses CoQ as a cofactor (CoQ FADH pool) [25]. However, the two pools can interact with each other. For example, fasting leads to an energy shift from glucose to fatty acids, which results in a decrease in the NADH/FADH 2 ratio. In that situation, the CoQ FADH pool can be over-reduced and the electron flux could be reversed in order to reduce NAD + through the CoQ NADH pool, thus restoring the oxidized CoQ [25]. This reverse electron transport (RET) from CoQ to NAD + enhances the scape of electrons and produces an accumulation of ROS in the form of anion superoxide at the level of CI, resulting in CI-derived oxidative damage [25,26]. The CI-derived oxidative damage leads to the degradation of CI with the subsequent release of CIII and CoQ NADH pool from the super-complexes. This partial release of the CoQ NADH pool is then used to restore the oversaturated CoQ FADH pool by the shift in the metabolism from carbohydrates to fats [25]. In addition, the generation of the RET could be enhanced by the electrons that other enzymes transfer to CoQ, such as glycerol-3-phosphate dehydrogenase or the electron-transferring flavoprotein, also leading to ROS production [16,26]. Therefore, both the direction of the flow of electrons in the mitochondrial respiration and the formation of mitochondrial complexes/super-complexes are modulated by the CoQH 2 /CoQ ratio, which serves as a sensor to the metabolic status of the mitochondria [27]. This key role of the CoQH 2 /CoQ ratio has been experimentally demonstrated with the uses of the alternative oxidase (AOX), which accepts electrons from CoQ and, therefore, contributes to decrease the CoQH 2 /CoQ ratio, resulting in a decline of RET and ROS production [28]. However, it is important to highlight that the ROS derived from RET may provide some beneficial effects since they can work as cellular signalers. The toxic or beneficial effect of ROS depends on their amount, localization and type of ROS [29]. In fact, ROS production via RET at CI, controlled by the CoQH 2 /CoQ ratio, has been associated with different physiological processes, such as: (1) the in vitro differentiation of myoblasts into myotubes [30], (2) the metabolic shift from carbohydrates to fatty acids [27], (3) the macrophages' reprograming and activation under bacterial stimuli [31], (4) the sensing of oxygen levels by the specialized cells in the carotid body [32], (5) the increase of the lifespan in Drosophila melanogaster [33] or (6) in the oxidative damage produced by the reperfusion of heart or brain after infarction or stroke, since the interruption of electron flow induces the accumulation of succinate in the ischemic phase of these conditions, follow by a rapid use of that succinate in the reperfusion phase, leading to an increase of the CoQH 2 /CoQ ratio and RET [34,35]. This underlies the importance of the CoQH 2 /CoQ ratio and RET in both physiological and pathophysiological contexts.
From a different perspective, the importance of CoQ in the mitochondrial respiratory chain is evidenced by the OxPhos defect and decreased ATP production in tissues from patients with primary CoQ 10 deficiency, as well as in cells and animal models of CoQ deficiency [5]. For instance, decreased activities of CoQ-dependent mitochondrial complexes have been described in muscle and/or skin fibroblasts from the first patients with identified molecular defects in the CoQ biosynthetic pathway, i.e., COQ2, PDSS2, PDSS1 or COQ9 [36][37][38][39][40]. Curiously, the severity of the OxPhos defect inversely correlates with ROS production and oxidative damage in skin fibroblasts from patients with primary CoQ 10 deficiency [12,13]. This correlates with the low mitochondrial ROS production in the car-diac mitochondria from the Coq7 conditional Knockout (KO) mice, which contains only 10% of the normal CoQ levels [41]. The connection between CoQ levels and bioenergetics defects has also been demonstrated in conditions of pharmacological inhibition of CoQ biosynthesis in human skin fibroblasts and neurons [15]. Also, mouse embryonic fibroblasts (MEFs) from a Coq7 knockout mouse model or a Coq9 knock-in mouse model (Coq9 R239X ), generated by independent groups, show a reduction in mitochondrial respiration and a decrease in ATP production [42][43][44][45]. COQ7 is a hydroxylase that uses demethoxyubiquinone (DMQ) as substrate in the CoQ biosynthetic pathway, and it needs COQ9 for its stability and function [2,3,44]. Consequently, Coq7 knockout mice and Coq9 R239X mice accumulate DMQ, which could compete with CoQ and inhibit the CI + III activity [46]. Additionally, the mouse model of CoQ deficiency due to a spontaneous mutation in Pdss2 (Pdss2 kd/kd ) shows decreased activities of complex I and II + III activities in kidneys, the most clinically affected tissue [47]. Interestingly, OxPhos defects in cell and animal models of CoQ deficiency are not always rescued by CoQ 10 supplementation, and their role in the pathogenesis of the disease seems to be variable, probably depending on the molecular defect and/or tissue specificity. In vitro, CoQ 10 supplementation for 7 days normalizes the ATP levels and ATP/ADP ratio in skin fibroblast from patients with mutations in PDSS2, COQ2 and COQ9 [48]. However, other short-tail ubiquinone analogs are not able to restore the ATP synthesis, demonstrating the importance of the CoQ structure in the function of the OxPhos system [48]. In vivo, the low absorption and bioavailability of the exogenous CoQ 10 limits its bioenergetic effects in some tissues. In Pdss2 kd/kd mice, CoQ 10 supplementation does not rescue the CoQ-dependent complexes activities in kidneys, although therapeutic benefits were reported, presumably due to other CoQ 10 functions [47,49]. In Coq9 R239X mice, ubiquinol-10 (CoQ 10 H 2 ), but not ubiquinone-10 (CoQ 10 ), is able to partially increase CI + III activity in the brain due to its superior absorption, bioavailability and mitochondrial uptake [50], leading to an increase in survival [51]. Since Coq9 R239X mice accumulates DMQ, the reduction in the levels of DMQ achieved by the treatment with beta-resorcylic acid (β-RA) is able to increase the bioenergetics and obtain therapeutic outcomes that are superior to those obtained under CoQ 10 H 2 supplementation [51]. The decrease on the levels of DMQ, and its subsequent therapeutic benefits, is also achieved by b-RA in the conditional knockout Coq7 mouse model, as well as in skin fibroblasts from patients with mutations in COQ7 or COQ9 [41,52,53], pointing out the structural specificity of CoQ in its function in the mitochondrial respiratory chain. The importance of CoQ in the OxPhos system has also been revealed in cases of secondary CoQ deficiencies, although, in those cases, it is unclear the contribution of the different functions of CoQ to the pathophysiologic characteristics of the disease.

The Role of CoQ in the Regulation of Sulfide Metabolism and Others Linked Pathways
Given its central role in the mitochondrial respiratory chain, CoQ links the mitochondrial respiratory chain to other mitochondrial enzymes and pathways in the functional structure called the CoQ-junction. One of these enzymes is the sulfide:quinone oxidoreductase (SQOR), which catalyzes the first step in the mitochondrial sulfide oxidation pathway. SQOR couples H 2 S oxidation to CoQ reduction, forming a protein-bound persulfide ( Figure 2). The SQOR-bound persulfide is transferred to a sulfane sulfur acceptor, e.g., such as glutathione (GSH) or sulfite, resulting in the generation of GSH persulfide (GSSH) or thiosulfate, respectively. The persulfide group from GSSH is further oxidized to sulfite by an iron-dependent sulfur dioxygenase (SDO) (also known as ETHE1 or persulfide dioxygenase). Sulfite can then either be oxidized to sulfate by sulfite oxidase (SO) or converted to thiosulfate via addition of a persulfide catalyzed by the thiosulfate sulfurtransferase or rhodanese (TST). The sulfane sulfur from thiosulfate can be remobilized by another sulfurtransferase called thiosulfate reductase (TR) (Figure 2) [54][55][56][57]. The H 2 S used as a substrate by the SQOR is produced by at least three enzymes, of which two are in the transsulfuration pathway (Figure 2), localized in the cytosol. These two enzymes are Cystathionine β-synthase (CBS), which produces H 2 S primarily by conden-sation of cysteine and homocysteine, and cystathionine γ-lyase (CSE), which produces H 2 S primarily by αand β-elimination of cysteine, generating pyruvate and ammonia. A third enzyme, 3-mercaptopyruvate sulfurtransferase (3MST) [56], produces H 2 S from 3-mercaptopyruvate (3MP), an achiral α-keto acid generated by cysteine aminotransferase (CAT) from L-cysteine and α-ketoglutarate (α-KG). The CAT/3MST pathway has also been detected in mitochondria, which opens the possibility of an intramitochondrial production of H 2 S (Figure 2) [58]. The regulation of production and the use of H 2 S occurs at the level of expression and activity of the biosynthetic and catabolic enzymes. For example, tonic inhibition of CBS is relieved during hypoxia, leading to elevated H 2 S production [59], the restriction in sulfur aminoacids (SAAs) upregulates the transsulfuration pathway, increasing H 2 S production [60,61], or the levels of SQOR are increased under hypoxia and restriction in SAAs [62,63]. However, an integration of regulatory aspects in both the biogenesis and the catabolism of H 2 S has not been clearly formulated. Recently, our group has demonstrated that CoQ 10 supplementation leads to an upregulation of SQOR, together with a downregulation of CBS and CSE, in vitro ( Figure 3) [64]. Therefore, CoQ 10 regulates both pathways in opposite directions by modifying the gene expression and protein levels of SQOR, CBS and CSE. Although the mechanisms of this regulation have not been identified yet, these results may have relevant therapeutic implications for diseases with disrupted H 2 S metabolism. For instance, the reduction in the H 2 S levels, as a consequence of the effects of CoQ 10 supplementation, could be a therapeutic approach in genetic diseases with defects in sulfide metabolism enzymes, i.e., the ethylmalonic encephalopathy caused by mutations in ETHE1 [65], or the Leigh syndrome caused by mutations in SQOR [66]. In both cases, the accumulation of high levels of H 2 S induces mitochondrial toxicity and, consequently, the repression of the CBS and CSE, together with the stimulation of SQOR, may limit that toxicity by reducing the levels of H 2 S. CoQ 10 supplementation may also provide therapeutic benefits in more common diseases, where cell-specific accumulation of H 2 S has been reported. For example, a decrease in the enzymes involved in the H 2 S oxidation pathway has been reported in the gut of mouse models and patients with Crohn's Disease, together with a relative increase in the abundance of H 2 S microbial producers, resulting in pathological accumulation of H 2 S that contributes to the disease [67], and the increase in CBS has been reported in human biopsies of precancerous adenomatous polyps [68].
The transsulfuration pathway, and specifically, mRNA levels, protein levels and activities of CSE or CBS, has been linked to alterations in other metabolic pathways, such as serine and nucleotides biosynthesis or folate cycle [7,69,70]. Several evidences have demonstrated the contribution of these alterations to pathophysiological states related to mitochondrial dysfunction, such as: (1) the inhibition of CI in human cells causes an upregulation of the mRNA levels of CBS and CSE, together with the upregulation of PSAT1, SHMT2 and PHGDH, which are involved in serine/glycine biosynthesis and folate cycle [71], (2) the levels of the MTHF2 protein, involved in the folate cycle, are increased in the Deletor mouse model, a mouse model with accumulation of mtDNA deletions, resulting in modifications in one-carbon metabolism [72], (3) the levels of MTHF2 and SHTM2 proteins are increased in other mouse models of mitochondrial diseases caused by defects in mtDNA [7], (4) CBS, CSE, PHGDGH, PSPH and PSAT1 mRNAs are upregulated in other human cell models of pharmacologically induced mtDNA depletion [73] and (5) MTHFD1L, MTHFD2, PSAT1 and PHGDH are upregulated in patients with mitochondrial myopathy caused by mtDNA deletion [70]. Thus, the regulatory effects of CoQ over sulfide metabolism could indirectly modulate these pathways and, consequently, provide therapeutic benefits on these pathophysiological states (Figure 3). In fact, the serine/glycine ratio is increased by the supplementation with CoQ 10 in vitro, together with a metabolic adaptation of nucleotides biosynthesis and folate cycle [64]. Therefore, CoQ 10 supplementation could be beneficial in pathologies with alterations in sulfide metabolism, serine biosynthesis, folate cycle or nucleotide metabolism by repressing CBS, CSE, PHGDH, PSAT1 and MTHDF1L, among others [64].
The role of CoQ in sulfide metabolism and related pathways has also been demonstrated in models of primary CoQ deficiency. Two independent studies showed that either in vitro, in skin fibroblasts from patients with primary CoQ 10 deficiency, or in vivo, in two different mouse models of primary CoQ deficiency, the deficiency in CoQ leads to reduced activity and levels of SQOR [74,75]. The consequence of this reduction is an increase in the amount of H 2 S and a reduction in the levels of glutathione (GSH), an antioxidant composed by glutamate, cysteine and glycine, the last two linked to H 2 S metabolism [74,75]. In one study, two mouse models of CoQ deficiency caused by different mutations in Coq9 were used [75]. The Coq9 Q95X mouse model, which has a mild reduction of CoQ levels and shows mild signs of late-onset myopathy, has reduced levels and activity of SQOR in the skeletal muscle. The Coq9 R239X mouse model, which has a severe reduction in CoQ levels and suffers a fatal mitochondrial encephalopathy, has severe reduction in the levels and activity of SQOR in the brain, kidneys and skeletal muscle [75], and, as a consequence, the CBS levels are increased [64]. Besides, the levels of SQOR downstream enzymes, Sulfite Oxidase (SO) and Thiosulfate Sulfurtransferase (TST), but not ETHE1, are increased, most likely as a compensatory mechanism [75]. Moreover, the most clinically affected tissue in Coq9 R239X mice, the brain, shows a reduction in the levels of total GSH, together with a decrease in the levels and activities of the glutathione reductase (GRd) and glutathione peroxidase 4 (GPx4) enzymes [75]. Interestingly, CoQ and GPx4, together with the apoptosis-inducing factor mitochondria-associated 2 (AIFM2), have been related to the suppression of ferroptosis, a cellular process that has not been evaluated in CoQ deficiency [76,77]. Furthermore, the levels of specific metabolites of the serotonin biosynthesis pathway and the levels of tyrosine are increased. This may suggest that sulfide metabolism can interact and alter the neurotransmitter biosynthesis. Accordingly, similar alterations in the levels of L-glutamate, dopamine and 5-hydroxyindoleacetic acid are detected in wildtype animals treated with H 2 S donors [75]. Furthermore, the effects of H 2 S, a well-known vasodilator [78], cause low blood pressure in Coq9 R239X mice. These abnormalities are rescued by the treatment with b-RA [51], which, as previously mentioned, rescues CoQ deficiency due to mutations in Coq7 or Coq9 [41,[51][52][53].
Another study used the Pdss2 kd/kd mice, which suffer from nephrotic syndrome [74]. Pdss2 kd/kd mice show severe reduction in the levels of SQOR in the kidneys. In this model, however, contrary to what was observed in Coq9 mutant mice and human CoQ-deficient fibroblasts, also, SQOR downstream enzymes TST, SO and ETHE1 are downregulated, indicating genotype-and/or tissue-specific mechanisms. As a consequence, H 2 S levels are increased, and GSH levels are decreased in the kidneys of Pdss2 mice [74]. Moreover, urine and plasma thiosulfates are decreased, and short-chain acylcarnitine is increased in plasma of these mice. The altered acylcarnitine profile might result from inhibition of short-chain Acyl-CoA dehydrogenase (SCAD) by H 2 S, or might be the consequence of low levels of CoQ on lipid metabolism, as discussed in the next section of this review. In any case, chronic administration of oral CoQ 10 increases SQOR and the other enzymes of the H 2 S oxidation, and GSH levels, normalizes plasma acylcarnitine profile and prevents renal failure in Pdss2 kd/kd mice [48]. Therefore, the disruption in sulfide metabolism is one of the pathomechanisms of primary CoQ deficiency and it should be considered for the development of new treatments [47,51,74,75].

Other CoQ-Linked Reactions in Mitochondria
CoQ receives electrons from other enzymes of different metabolic pathways in the CoQjunction (Figure 1). It receives electrons from dihydroorotate dehydrogenase (DHODH), which catalyzes the conversion of dihydroorotate to orotate, the fourth reaction step within pyrimidine de novo biosynthesis [79]. Therefore, the pyrimidine de novo biosynthesis is directly connected to CoQ and, consequently, low levels of CoQ may impair uridine-5 -triphosphate (UTP), cytidine 5 -triphosphate (CTP) and deoxythymidine triphosphate (dTMP) synthesis, as well as RNA and DNA synthesis. In fact, supplementation with uridine, the precursor of UTP, CTP and dTMP in the pyrimidine salvage pathway [80], increases the growth rate in CoQ 10 -deficient fibroblasts, but not in wild-type fibroblasts [36]. Moreover, secondary CoQ 10 deficiency has been reported in patients with mitochondrial DNA depletion due to mutations in DGUOK (encoding mitochondrial deoxyguanosine kinase, which is involved in the purine nucleotide salvage pathway), SUCLA2 (encoding the β subunit of succinyl-CoA synthase, which is involved in the Krebs cycle), MPV17 (involved in mitochondrial deoxynucleoside triphosphates pool homeostasis) or from unknown etiology [81,82]. The CoQ-dependent DHODH seems to also be important in tumorigenesis since the pyrimidine biosynthesis required in mouse breast cancer cells need a functional CoQ redox-cycling and DHODH activity [83].
CoQ also receives electrons from the electron transfer flavoprotein-dehydrogenase (ETFDH), which serves as a short electron transfer pathway to conduct electrons from nine different mitochondrial flavin adenine dinucleotide (FAD)-containing acyl-CoA dehydrogenases of fatty acid β-oxidation and amino acid catabolism to the ubiquinone pool [84]. Curiously, some patients with mitochondrial myopathy due to mutations in ETFDH show CoQ 10 deficiency, although the precise mechanisms for this association are unknown [85,86]. Importantly, a trend toward decreased levels of short-and medium-length acylcarnitines are showed in the liver and kidneys of Pdss2 kd/kd , while the levels of acylcarnitines C4, C5 and C6 are increased in plasma of the same mice, indicating a defective oxidation of fatty acids [74].
A third type of enzymes that use CoQ as electron acceptors are proline dehydrogenase and proline dehydrogenase 2 (PRODH and PRODH2) [87,88], which are related with proline, glyoxylate and arginine metabolism. Interestingly, PRODH2 has been proposed as a molecular target for treating primary hyperoxaluria, and some CoQ analogs seem to stimulate PRODH2 activity [87]. The remaining mitochondrial enzymes that use CoQ are glycerol 3-phosphate dehydrogenase (GPD2) [89], which connects glycolysis, OxPhos and fatty acids metabolism, and choline dehydrogenase (CHDH) [90], which is involved in the glycine metabolism. Remarkably, the behavior of these CoQ-linked proteins in CoQ deficiency seems to be different from SQOR, since kidneys of Coq9 R239X mice show an increase in the levels of ETFDH, CHDH, DHODH, PRODH and PRODH2 [3] (Table 1), most likely due to a compensatory mechanism, although the functional evaluation of theses enzymes has not been assessed in CoQ deficiency. The results were obtained by liquid chromatography (LC) -Mass spectrometry (MS)/MS using tandem mass tagging to measure relative protein abundances [3].
Other mitochondrial components susceptible to be regulated by redox reactions are the UCPs. Controversial results have been reported on the involvement of CoQ in the regulation of the UCPs. By using bacterial overexpressed UCP1, 2 and 3 in liposomes, Echtay and colleagues [91,92] showed that CoQ, but not CoQH 2 , activated the H+ transport through the UCPs. These studies suggested that CoQ acts as a non-covalent UCP cofactor in cooperation with other well-known UCPs modulators, such as free fatty acids or retinoids. Later on, Jaburek and Garlid [93] optimized the conditions of isolation and refolding of bacterially expressed UCPs and evaluated the effect of CoQ in the same model. Contrary to what was reported by Echtay and colleagues [91,92], they found that CoQ had no effect on the proton transport catalyzed by any of the UCPs [93]. Similar conclusions were documented by Esteves and collaborators using a CoQ-deficient yeast model [94]. Nevertheless, a more recent study showed that CoQ, through its redox state, is a regulator of the inhibition, by purine nucleotides, of free fatty acid-activated UCP1 homologues under phosphorylating respiration conditions [95]. Therefore, additional studies are required to elucidate the role of CoQ in the modulation of UCPs activities, especially under physiological conditions and taking into account potential type-and tissue-specific differences. Also, some reports have shown that CoQ 10 , as well as other short-tail CoQ analogs, can function as modulators of apoptosis by the regulation of the mitochondrial permeability transition pore (PTP) [96][97][98]. As it happens with other CoQ functions, the size of the polyprenoid tail has functional implications, i.e., CoQ 10 inhibits PTP opening induced by H 2 O 2 , CoQ 5 does not produce any effect on the PTP opening induced by H 2 O 2 , while CoQ 0 induces PTP opening and H 2 O 2 production [99]. However, cell-and tissue-specific differences have been observed [99,100], and, consequently, additional studies in physiological and pathophysiological conditions are required to better understand the role of CoQ 10 and other short-tail analogs in the regulation of the mitochondrial PTP opening.

Conclusions and Perspectives
From the first isolation of CoQ, its role in the mitochondrial respiratory chain and energy production has been clearly demonstrated. The generation and characterization of different models of CoQ deficiency and studies of CoQ 10 supplementation in the same models have confirmed it. Also, recent studies have unveiled the importance of the redox state of CoQ in the regulation of super-complexes' formation and, consequently, in the use of the reducing equivalents by the respiratory chain, as well as in the production of ROS.
These data could open the possibility to modulate/modify the energy metabolism through physiological or pharmacological interventions that target the redox state of CoQ. Besides its implication in the mitochondria respiratory chain, CoQ is also a key component in the reactions mediated by other mitochondrial enzymes and, therefore, CoQ links the energy production to other metabolic pathways of the cell. The contribution of these CoQ-linked enzymes to RET must be better defined in different physiological and pathophysiological conditions. Also, whether all these metabolic pathways related to the CoQ-linked enzymes are influenced by CoQ levels, including the cases of primary and secondary CoQ deficiencies, or CoQ redox state, remains to be evaluated. However, recent studies indicate that modifying the levels of CoQ and/or its redox state indeed affects some of these pathways, i.e., sulfide metabolism, in the mitochondrial and cytosolic compartments. In any case, the link between CoQ, sulfide metabolism, one-carbon metabolism, glutathione and ferroptosis shown in recent studies must be validated and further investigated in different models. Furthermore, those pathways could be influenced by an alteration in the distribution of CoQ among the different compartments of the cell. However, our knowledge about the mechanisms of CoQ distribution in the cell is still very limited, and it is unknown if the cell responds with a redistribution in the CoQ pool under CoQ deficiency. Together, the results exposed above prove the relevance of CoQ 10 beyond its classical function as an electron carrier in the mitochondrial respiratory chain and, consequently, they may have significant implications in the use of CoQ 10 supplementation in patients with different metabolic diseases. Nevertheless, additional research studies are required in models of CoQ deficiency, models of CoQ 10 supplementation and models with different redox states of CoQ, paying close attention to the bioavailability of the exogenous CoQ 10 and the potential cell-and tissue-specific differences.