Geophysical Characterization in the Shallow Water Estuarine Lakes of the Southern Everglades, Florida

: Anthropogenic activities have greatly modiﬁed freshwater ﬂows through Everglades National Park (ENP) such that saltwater has intruded extensively inland from the coastline, causing coastal lakes and their ecosystems to be exposed to varying salinity conditions. The Comprehensive Everglades Restoration Plan (CERP) makes an effort to restore the quantity, quality, timing, and distribution of freshwater ﬂow in ENP with a goal of reducing salinity conditions within the coastal communities and adjacent estuaries. An understanding of the temporal and spatial variations of surface water and shallow groundwater salinity in the coastal lakes of ENP is needed to evaluate restoration efforts. Geophysical surveys were conducted between 2016 to 2019 using electrical resistivity and electromagnetic (EM) methods in the coastal lakes of ENP. A mean local formation factor of 10.7 ± 1.8 was calculated for the region by comparing the lakes’ bottom formation inverted electrical resistivity soundings with coincident pore water resistivity measured in groundwater wells. The conductivity of surface and groundwater increased during the dry season, reﬂecting decreased precipitation, increased evapotranspiration, and the increasing inﬂuence of saline water from Florida Bay. Spatially, salinity in the lakes increased from west to east in the surface water with an opposite trend observed in the shallow groundwater. Along the south to north inland direction, the salinity of both surface water and groundwater decreased. This study demonstrates that ﬂoating electrical resistivity and EM methods can characterize the subsurface formation resistivity and describe temporal and spatial patterns of surface and shallow groundwater conductivity.


Introduction
During the past century, Everglades National Park (ENP) has been adversely impacted by past human activities that have altered the flow of freshwater through the system [1]. Moreover, the underlying highly permeable limestone aquifer is susceptible to saltwater intrusion (SWI) along the coastline [2]. In the 1950s, the U.S. Army Corps of Engineers developed canals, levees, and water conservation areas for flood protection. Even though this development plan has succeeded in controlling floods, South Florida does not receive sufficient quantity and distribution of water, which results in ecosystem degradation and extensive saltwater intrusion [1].
In 2000, the U.S. Congress authorized the Comprehensive Everglades Restoration Plan (CERP) to restore, preserve, and protect the South Florida ecosystem. The CERP makes an effort to restore the quantity, quality, timing, and distribution of freshwater in the region [3]. Major activities of the CERP are expected to increase the flow of freshwater and modify   A number of geophysical studies have been conducted in the ENP. A study conducted in the southern ENP [19] aimed to assess saltwater intrusion and prepared a subsurface resistivity map using airborne electromagnetic methods (FDEM) and borehole geophysical measurements. The authors established correlations between formation resistivity and water-specific conductance for the region and provided a baseline for further studies. In 2011, a TDEM survey was conducted in Miami-Dade County and delineated the location of the freshwater/saltwater interface, as well as showing the influence of canals and roadbeds on the hydrologic regime [19,21]. Surveys of surface water salinities of the coastal lakes within ENP indicated brackish to hypersaline salinities that varied according to season (higher in the summer following the dry season), and proximity of upstream freshwater sources and exchange with Florida Bay marine waters downstream [22,23].
This paper aims to present the relationship between the freshwater input and hydrochemistry of surface waters and lake-bottom groundwater in shallow (1-2 m) brackish lakes within the southern Everglades known as the Mangrove Lakes ( Figure 1). It explores the spatial and temporal changes in groundwater chemistry using electrical resistivity, EM methods, surface water, and groundwater sampling. The EM surveys were conducted from 2016 to 2017 using a GSSI EMP-400 Profiler multi-frequency [24] EM conductivity meter integrated with a GPS receiver deployed in a flat-bottomed plastic kayak towed behind a motorized jon boat. In addition, electrical resistivity soundings were conducted at spot locations in July 2019 using a floating electrode array connected to an Advanced Geosciences, Inc. (AGI) Super Sting resistivity meter [25]. During the survey, at various spot locations, the surface water conductivity, temperature, pH, and salinity were recorded using a YSI water quality data sonde. Water depths were also measured. Groundwater-specific conductivity was continuously monitored at four shallow wells on the shorelines of the lakes and was compared to nearby inverted lake bottom resistivity to calculate a formation factor for the Lakes region. This formation factor was used to convert the inverted formation resistivity to groundwater resistivity and produce a regional map of groundwater salinity. This study investigated the spatial and temporal changes in the surface water and groundwater salinity in the Mangrove Lakes of ENP using electrical resistivity and EM methods. Understanding the hydrochemistry of the aquifer can help to establish sustainable water resources management, and regularly monitoring the hydrological conditions is required for proper water management practice and conservation actions. This study showed that floating electrical resistivity arrays and EM ground conductivity meters can effectively characterize the lake bottom salinity and can be used regularly in monitoring the surface water and groundwater salinity in shallow water bodies.

Electrical and Electromagnetic Methods
Geophysical methods such as electrical resistivity and electromagnetics are rapid and noninvasive geophysical methods for measuring groundwater properties and characterizing the spatial and temporal variability of subsurface formations [26]. These methods include electrical resistivity methods such as vertical electrical soundings (VES) and electrical resistivity tomography (ERT), and electromagnetic (EM) methods such as frequencydomain electromagnetic (FDEM) and time-domain electromagnetic (TDEM) soundings and profiling. These methods are commonly used in near-surface geophysics because the subsurface electrical properties are easily correlated to the physical and chemical properties of fluids within the pore space [27]. These methods can produce a high-resolution image of the shallow subsurface formation and have been widely used in hydrogeology and environmental studies.
In electrical resistivity, a current is injected across a pair of electrodes, and the voltage difference between the potential electrodes is measured. The voltage difference is a function of the injected current and the resistivity beneath the electrode array. In the electrical resistivity method, commonly used electrode configurations include the Wenner, Schlumberger, and dipole−dipole arrays. In dipole−dipole arrays, the dipoles are equal in width (a) and separated by a distance n × a, where n is an integer multiplier ( Figure 2B).
Electromagnetism uses the principles of electromagnetic induction to map variations in electrical conductivity. EM waves from a transmitting coil induce eddy currents in subsurface conductors, resulting in a secondary magnetic field detected in a receiver coil. The electrical resistivity and EM data are modeled to infer the electrical conductivity of the subsurface.  Different regularization optimization techniques have been developed to invert and model these data, including Occam's inversion [28], layered and laterally constrained inversion [29], and ridge regression [30,31]. For example, Occam's inversion solution fits the measurement with the smoothest possible model, and the inverted models generally do not show sharp changes [29]. Occam's inversion trades off the roughness of the model improvement and the least-squares error predicted from the linearized forward problem, whereas the ridge regression trades off the size of the model improvement [30,31]. In the ridge regression, for each iteration, a model correction is calculated using the best damping factor available for that iteration [30]. Equivalency analysis shows the possible range of models that can fit the data. The results obtained from the inverse model need careful interpretation.
In porous media, currents are carried by electrolytic conduction of ions in the pore waters. The pore fluid conductivity, σ GW , and the bulk conductivity of the rock σ rock are related by σ GW = Fσ rock , where F is the formation factor. The formation factor can be determined by coincident measurements of groundwater and formation conductivity or from empirical relationships such as Archie's Law [17]. The estimated formation factor can be used to infer the electrical conductivity of the pore fluids. Then, the salinity of the subsurface formation can be calculated using the general equation given by [32][33][34].

Data Collection
A GSSI Profiler EMP-400 multi-frequency EM conductivity meter integrated with a GPS receiver was deployed in an unmanned, flat-bottomed plastic kayak towed 6 m behind a motorized skiff (Figure 2A). The instrument was initially calibrated at the GSSI factory by suspending it well above the ground and zeroing the field values. Immediately before data acquisition, field calibrations were performed on-site. The field calibration procedure removes any electromagnetic effects of the operator and other equipment in the surrounding area. However, since the kayak contained no conducting materials and was towed 6 m behind the skiff, little if any external effects affected the data. The EM data were recorded in a vertical dipole moment (VDM) at 1, 4, and 16 KHz frequencies.
Six electromagnetic surveys were conducted in West Lake and Seven Palm from January 2016 to February 2017 (Table 1, Figure 2A) to assess the seasonal variability in conductivity between wet and dry seasons. During the EM survey, at different localities and different intervals of time, the surface water conductivity, temperature, pH, and salinity were measured using a YSI water quality data sonde. Water depths were measured continuously using a sonar transducer and at spot locations using a calibrated rod.
VES surveys were conducted at spot locations in the Seven Palm and West Lake systems in July 2019 using a floating 14-electrode cable with a 1 m electrode spacing ( Figure 1). The cable was suspended at the water surface using foam floats (noodles) attached in between the electrodes ( Figure 2B). Each survey consisted of a set of 48 dipoledipole measurements recorded with both 1 m and 2 m dipole lengths. The dipoles were spaced at distances ranging from 1 to 11 m (n, Figure 2B). Reciprocal measurements where the current and potential electrode pairs are exchanged were included in each survey. These reciprocal measurements provide redundancy and the ability to estimate measurement uncertainty. The measurements from the evenly spaced electrodes were repeated multiple times. The dipole measurements were averaged from either 2 or 4 measurements. The average value of the measurements and the reciprocal measurements were used. This resulted in a set of 11 dipole-dipole VES measurements at each spot location.
Continuous measurements of water level, temperature, and conductivity were recorded using Aqua troll 200 data sondes in four shallow monitoring wells and at four adjacent locations within the lakes [35] (Figure 1). Coincident conductivity measurements recorded from the wells and resistivity measurements produced using the floating dipole-dipole electrical resistivity array in July 2019 were used to estimate the formation factor. Similar to the EM survey, at different localities and different intervals of time, the surface water conductivity, temperature, pH, and salinity were measured using a YSI water quality data sonde at the electrical resistivity measurement sites. Water depths were measured using a calibrated rod during the electrical resistivity surveys.

Data Analysis
In frequency domain electromagnetic (FDEM) methods, the EM instrument measures the in-phase (real) and out-of-phase (quadrature) components of the secondary magnetic field (H s ) to the primary magnetic field (H p ). The ratio of the secondary to the primary field of a vertical dipole (horizontal coils) homogenous half-space is expressed as: where γ = √ iωµ 0 σ is a complex wave number and s is coil spacing (m) [36,37]. The ratio of the secondary to the primary magnetic field (Hs/Hp) is a complex function that depends on inter-coil spacing (s), frequency (f ), and conductivity (σ). Apparent conductivity was calculated by inverting the quadrature (imaginary) field ratio for a homogenous halfspace [36,37]. The EM data were recorded at frequencies of 1, 4, and 16 KHz. The depth penetration of the data is related to the input frequency. The higher frequencies (e.g., 16 KHz) have shallow penetration and represent the conductivity of the surface water. The lower-frequency (e.g., 4 and 1 KHz) data have deeper penetration and reflect an average of the conductivity of the surface water and groundwater. The calculated apparent conductivity was used to assess the spatial and temporal variability.
EM data often contain noise that must be removed to produce consistent results. Spikes in the data often occur near the beginning and end of the collection segment when the kayak drifts close to the boat. These outliers were removed by eliminating measurements differing by greater than 3 standard deviations from a 100-sample window ( Figure 3, Table 2).
High-frequency noise is produced by the roll and pitch of the kayak caused by waves. After outlier removal, this noise was removed with a 100-point moving average convolution filter ( Figure 3, Table 2). This random high-frequency noise (estimated standard error of the mean) was on the order of 0.6-10 mS/m, which is less than 1% of the field values. An example of how this technique was applied to data collected in the Seven Palm system is shown in Figure 3, and the descriptive statistical analysis is summarized in Table 2. A similar approach of a data filtering technique called "rolling ball algorithm" was applied to a terrain conductivity measurement, where the problems are anomaly complexity, noise spikes, and background conductivity variation [38].
VES soundings data were inverted to two-layer models (water column and lake bottom resistivity) by constraining the depth of the water column using IX1DV3 software [30]. The VES data were inverted using a ridge regression algorithm [30,31]. In the inversion, the water layer thickness was constrained and fixed using the measured depth by a calibrated rod. In addition, the resistivity measured using a YSI probe was used as a starting model for the surface water resistivity, and the lake bottom resistivity value was assumed to have a five-times-higher water column resistivity. Occam's inversion with 10 layers was used, with minimum and maximum depths ranging between 0.1 m and 5 m.
lower-frequency (e.g., 4 and 1 KHz) data have deeper penetration and reflect an average of the conductivity of the surface water and groundwater. The calculated apparent conductivity was used to assess the spatial and temporal variability. EM data often contain noise that must be removed to produce consistent results. Spikes in the data often occur near the beginning and end of the collection segment when the kayak drifts close to the boat. These outliers were removed by eliminating measurements differing by greater than 3 standard deviations from a 100-sample window ( Figure 3, Table 2).  In the Seven Palm system, on 10 July 2019, high winds caused considerable chops in the water which introduced noise into the resistivity measurements associated with the larger spacings (n = 10 and 11). Those outlying datapoints were masked from the analyses. The average value of the measurements and reciprocals was used in the inversion. Water depth in the model was constrained to a rod measurement at the array center, but the water layer and lake bottom layer resistivity were left unconstrained in the inversion. Finally, the inverted resistivity was converted to salinity using the general equation defined in the Practical Salinity Scale of 1978 (S p ) [32][33][34] where (t 68 /°C) is the measured temperature, r is the measured conductivity in (µS/cm)/ 42,914, and R t is the conductivity ratio r/r t . The factor r t is given by and the coefficients a i , b i , and c i are provided in Table 3 below. The salinity equation is approximately valid for salinity values that range between 2 to 42 PSU, where the temperature is between −2 to 35°C [32][33][34].  The formation factor for the study area was estimated using the bulk resistivity measured by the floating VES and coincident resistivity (inversely proportional to conductivity) data measured in the groundwater wells. The average daily conductivity (µS/cm) measurement in the groundwater wells was converted to resistivity, where the resistivity (Ω·m) = 10,000/Conductivity water (µS/cm). Then, the formation factor was calculated from the average value of the ratio of bulk resistivity modeled from the geophysical data and the pore water resistivity measured in the shallow groundwater wells. This estimated formation factor was used to produce a regional map of groundwater salinity.

Spatio-Temporal EM Apparent Conductivity Changes during the 2016 Dry Season in the Seven Palm System
In the Seven Palm system at monthly intervals during the 2016 dry season, the apparent conductivity measurements increased from February to April (Figure 4). The 1 KHz apparent conductivity ranged from 800 mS/m at the northern end of Seven Palm Lake to 1400 mS/m at southern end in February 2016, whereas in April 2016, it ranged from 930 to 2150 mS/m. Similarly, the apparent conductivity along 4 KHz ranged from 900 to 1500 mS/m in February 2016 to a range of 1000 to 2800 mS/m in April 2016 ( Figure 4). This showed that the apparent conductivities increased from north to south at all frequencies. In addition, for example, in northwest Seven Palm Lake, the 1 KHz apparent conductivities increase from around 800 mS/m in February to around 1070 mS/m in March to over 1100 mS/m in April. In Middle Lake, the apparent conductivities increased from around 1500 mS/m in February to 1700 mS/m in March to over 1800 mS/m in April. In Monroe Lake, it increased from around 2300 mS/m in March to over 2500 in April. This trend is consistent for 4 KHz data as well.
The apparent conductivity of the 16 KHz data varies from 1100 to 2000 mS/m in February 2016 and from 1200 to 2400 mS/m in March 2016 and from 1400 to 3200 mS/m in April 2016 from north to south along the profile line. This is consistent with the increase in conductivity and salinity seen in the surface probe measurements.
In general, during the 2016 dry season, the median apparent conductivity measurements increased from February to April at all frequencies as shown in the boxplot ( Figure 5). In the boxplot, the interquartile range (IQR) of the March 2016 data is highly dispersed compared to the other EM data set, because the survey line covered a larger portion of Monroe Lake (Figure 5), which is highly influenced by Florida Bay (Figure 1).

Spatio-Temporal EM Apparent Conductivity Changes between 2016 and 2017 in the Coastal Lakes of ENP
The EM data show a considerable decrease in apparent conductivity between February 2016 and January 2017 in both the Seven Palm and West Lake systems. In the Seven Palm system, the apparent conductivity showed a general decrease of 150 mS/m in the Seven Palm system and 300 mS/m in the Middle Lake ( Figure 6A,B). In the Seven Palm system, the 1 KHz apparent conductivity ranged from 800 mS/m at the northern end of Seven Palm Lake to 1400 mS/m at the southern end in February 2016 ( Figure 6A), whereas in January 2017, it ranged from 740 to 1200 mS/m ( Figure 6B). Similarly, the apparent conductivity along 4 KHz ranged from 870 to 4000 mS/m in 2016 ( Figure 6C) to a range of 800 to 2400 mS/m in 2017 ( Figure 6D). Appl   Appl. Sci. 2022, 12, x FOR PEER REVIEW 13 of 28 Figure 5. The box plot shows the mean (white dot), the median (white line), the interquartile range (IQR blue or red box) (i.e., the range between the 25th and 75th percentile), the upper and lower fence (range within 1.5 IQR), and outliers (asterisks). The EM data are not normally distributed, and the outliers (greater than 3 standard deviations of the consequent 100 samples) of the EM data were removed before the exploratory data analysis (boxplot). We considered the outliers marked by asterisks as field values.

Spatio-Temporal EM Apparent Conductivity Changes between 2016 and 2017 in the Coastal Lakes of ENP
The EM data show a considerable decrease in apparent conductivity between February 2016 and January 2017 in both the Seven Palm and West Lake systems. In the Seven Palm system, the apparent conductivity showed a general decrease of 150 mS/m in the Seven Palm system and 300 mS/m in the Middle Lake ( Figure 6A,B). In the Seven Palm system, the 1 KHz apparent conductivity ranged from 800 mS/m at the northern end of Seven Palm Lake to 1400 mS/m at the southern end in February 2016 ( Figure 6A), whereas in January 2017, it ranged from 740 to 1200 mS/m ( Figure 6B). Similarly, the apparent conductivity along 4 KHz ranged from 870 to 4000 mS/m in 2016 ( Figure 6C) to a range of 800 to 2400 mS/m in 2017 ( Figure 6D).
The EM results show the same trend in the West Lake system. The apparent conductivity of the 1 KHz data decreases from a range of 1200 to 1700 mS/m in 2016 to 950 to 1850 mS/m in 2017 ( Figure 6A,B). In addition, the result along 4 KHz dropped from 1600 mS/m in 2016 to 1500 mS/m in 2017 ( Figure 6C,D). Similarly, the result along 16 KHz dropped from 1800 mS/m in 2016 to 1600 mS/ in 2017 ( Figure 6E,F). In the West Lake system in January 2016, the highest apparent conductivities (2000 mS/m) were seen at the eastern end of the Long Lake and southern West Lake with the lowest conductivities in northern Cuthbert Lake. , and outliers (asterisks). The EM data are not normally distributed, and the outliers (greater than 3 standard deviations of the consequent 100 samples) of the EM data were removed before the exploratory data analysis (boxplot). We considered the outliers marked by asterisks as field values.
The EM results show the same trend in the West Lake system. The apparent conductivity of the 1 KHz data decreases from a range of 1200 to 1700 mS/m in 2016 to 950 to 1850 mS/m in 2017 ( Figure 6A,B). In addition, the result along 4 KHz dropped from 1600 mS/m in 2016 to 1500 mS/m in 2017 ( Figure 6C,D). Similarly, the result along 16 KHz dropped from 1800 mS/m in 2016 to 1600 mS/ in 2017 ( Figure 6E,F). In the West Lake system in January 2016, the highest apparent conductivities (2000 mS/m) were seen at the eastern end of the Long Lake and southern West Lake with the lowest conductivities in northern Cuthbert Lake.
In the West Lake system, the mean, median, and IQR of the apparent conductivity measurements decreased between February 2016 and January 2017 (Figure 7). Similarly, the median apparent conductivity measurements decreased between February 2016 and January 2017 in the Seven Palm system ( Figure 5). Appl   In the West Lake system, the mean, median, and IQR of the apparent conductivity measurements decreased between February 2016 and January 2017 (Figure 7). Similarly, the median apparent conductivity measurements decreased between February 2016 and January 2017 in the Seven Palm system ( Figure 5).
The apparent conductivity change between 2016 and 2017 in Seven Palm system is more significant than the West Lake system. The apparent conductivity change between 2017 to 2016, at all frequencies, decreased on average by 30% in Seven Palm system and 10% in West Lake system (Figure 8). At Seven Palm, the apparent conductivity change decreased by 20% at the northern end of Seven Palm Lake near the well and 30% at the southern end and clearly showed the trend from north to south. However, at the northern tip of Seven Palm there was an increase from 30 to 40%. Similarly, in the West Lake system, there was a gradual change from north to south and a significant change of 30% observed on the northern tip of Long Lake. In addition, the apparent conductivity change of the surface water is significant compared to the groundwater. For example, near the well at 1 KHz, 4 KHz, and 16 KHz, the apparent conductivity change decreased by 18%, 21%, and 26%, respectively ( Figure 8A-C). The apparent conductivity change between 2016 and 2017 in Seven Palm system is more significant than the West Lake system. The apparent conductivity change between 2017 to 2016, at all frequencies, decreased on average by 30% in Seven Palm system and 10% in West Lake system (Figure 8). At Seven Palm, the apparent conductivity change decreased by 20% at the northern end of Seven Palm Lake near the well and 30% at the southern end and clearly showed the trend from north to south. However, at the northern tip of Seven Palm there was an increase from 30 to 40%. Similarly, in the West Lake system, there was a gradual change from north to south and a significant change of 30% observed on the northern tip of Long Lake. In addition, the apparent conductivity change of the surface water is significant compared to the groundwater. For example, near the well at 1 KHz, 4 KHz, and 16 KHz, the apparent conductivity change decreased by 18%, 21%, and 26%, respectively ( Figure 8A-C).

Electrical Resistivity
The resistivity data collected on 10 July 2019 in Seven Palm Lake and on 15 July 2019 in West Lake were inverted to a two-layer constrained water depth model. In this section, we focus on the spatial−temporal change in groundwater and surface water.
In the constrained water depth inversion, the best fit (red color) and Occam's inversion (olive color) showed a good agreement in estimating the water column resistivity measured using the YSI probe ( Figure 9). In the figures, the equivalence analysis (dashed green line) produced a more tightly constrained result in the West Lake system (Figure 9a-j) compared to the Seven Palm system (Figure 9k-r). In the West Lake system, the surface water resistivity measured using the YSI probe decreased between 0.37 Ω·m and 0.28 Ω·m from west to east. In the Seven Palm system, the resistivity varies from 0.27 Ω·m at the north end to 0.17 Ω·m at the south end (Figures 9a-j and 10A). Similarly, the inverted surface water resistivity in the West Lake system decreased between 0.33 Ω·m at the west end and 0.26 Ω·m at the east end. In the Seven Palm system, the resistivity varies from 0.23 Ω·m at the north end to 0.16 Ω·m at the south end (Figures 9k-r and 10B). Generally, the data showed west to east and north to south decreases in surface water resistivity.
The lake bottom resistivity in the West Lake system varies between 1.69 Ω·m at the west end and 3.74 Ω·m at the east end. In the Seven Palm system, the resistivity is 32.85 Ω·m in the north and decreases gradually toward the south to 1.5 Ω·m ( Figure 10C). The lake bottom resistivity generally increased from west to east while it decreased from north to south.

Electrical Resistivity
The resistivity data collected on 10 July 2019 in Seven Palm Lake and on 15 July 2019 in West Lake were inverted to a two-layer constrained water depth model. In this section, we focus on the spatialtemporal change in groundwater and surface water.    In the inverse model, the minimum and maximum lake bottom resistivity varied between 1.4 Ω·m and 3.7 Ω·m at West Lake and between 1.4 Ω·m and 32.8 Ω·m at Seven Palm. Based on equivalency analysis, at West Lake, the model showed a highly constrained model with the lower and upper limit between 1.1 Ω·m and 4.9 Ω·m (Figure 11), whereas in Seven Palm, the model showed a poorly constrained model with the lower and upper limit between 1.4 Ω·m and 362 Ω·m (Figure 11). This model is poorly constrained mainly on the upper bound. The lower and upper limits in West Lake are highly constrained compared with the Seven Palm system (Figure 11). This uncertainty on the upper bound could be due to measurement errors induced by wind or wave action. Error bars indicate the lower and upper acceptable limits derived from equivalence analysis. West Lake system is located between 515,000 and 525,000 m and the Seven Palm system is located between 525,000 and 530,000 m.

Formation Factor
One method of estimating the formation factor of the lake bottom formation is by comparing groundwater resistivity ( ) measured in the shallow groundwater wells with nearby values of lake bottom resistivity ( ) modeled from the geophysical data. In this study, the West Lake data collected on 15 July 2019, was used to calculate a formation factor for the coastal lakes of ENP. A mean local formation factor of 10.7 ± 1.8 is estimated for the Mangrove Lakes of ENP. This estimated formation factor is calculated from the average formation factor of West Lake, Long Lake, and Cuthbert Lake ( Table 4). The formation factor of Seven Palm was not considered in the calculation as the resistivity of the model was poorly constrained due to the noise in the data (Figure 9).  Error bars indicate the lower and upper acceptable limits derived from equivalence analysis. West Lake system is located between 515,000 and 525,000 m and the Seven Palm system is located between 525,000 and 530,000 m.

Formation Factor
One method of estimating the formation factor of the lake bottom formation is by comparing groundwater resistivity (ρ w ) measured in the shallow groundwater wells with nearby values of lake bottom resistivity ρ f modeled from the geophysical data. In this study, the West Lake data collected on 15 July 2019, was used to calculate a formation factor for the coastal lakes of ENP. A mean local formation factor of 10.7 ± 1.8 is estimated for the Mangrove Lakes of ENP. This estimated formation factor is calculated from the average formation factor of West Lake, Long Lake, and Cuthbert Lake ( Table 4). The formation factor of Seven Palm was not considered in the calculation as the resistivity of the model was poorly constrained due to the noise in the data (Figure 9).

Salinity
The surface water salinity measured using the YSI probe varies from 15 PSU in the west in West Lake to 21 PSU in the east in Seven Palm ( Figure 12A). In the Seven Palm system, the surface water salinity measured using the YSI probe varies from 21 PSU in the north to 33 PSU in the south ( Figure 12A). The surface water salinity measured using the YSI probe varies from 15 PSU in the west in West Lake to 21 PSU in the east in Seven Palm ( Figure 12A). In the Seven Palm system, the surface water salinity measured using the YSI probe varies from 21 PSU in the north to 33 PSU in the south ( Figure 12A).  The inverted surface water salinity has the same trend and increased from 19 PSU to 27 PSU from west to east and from 27 PSU to 35 PSU from north to south ( Figure 12B). In contrast, the inverted groundwater salinity decreased from 42 PSU in the west in West Lake to 2 PSU in the east in Seven Palm. In the Seven Palm system, the groundwater salinity increased from 2 PSU in the north to 49 PSU in the south ( Figure 12C).

Discussion
During the 2016 dry season, the apparent conductivity measurements at 1 KHz and 4 KHz increased from February to April (Figures 4 and 5) in the Seven Palm system at monthly intervals. This reflects a general increase in apparent conductivities (salinity) in the groundwater over the dry season. This change is in response to decreased precipitation ( Figure 13). Similarly, the apparent conductivity of the 16 KHz data indicates a general increase in apparent conductivities (salinity) in the surface water over the dry season and from north to south along the profile line of the Seven Palm system. This change is due to reduced precipitation and increased potential evapotranspiration, which results in a sharp decrease in the water level as well ( Figure 13). The surface water salinities of the coastal lakes of ENP showed brackish to hypersaline salinities with higher salinities in the summer following the dry season [22,23]. Salinity variation in time and space in the Florida Bay is governed by the influence of precipitation [35] evapotranspiration, runoff, mass exchange with the surrounding basins [5], proximity of upstream freshwater sources, and exchange with Florida Bay marine waters downstream [22,23]. Appl. Sci. 2022, 12, x FOR PEER REVIEW 24 of 28 The inverted surface water salinity has the same trend and increased from 19 PSU to 27 PSU from west to east and from 27 PSU to 35 PSU from north to south ( Figure 12B). In contrast, the inverted groundwater salinity decreased from 42 PSU in the west in West Lake to 2 PSU in the east in Seven Palm. In the Seven Palm system, the groundwater salinity increased from 2 PSU in the north to 49 PSU in the south ( Figure 12C).

Discussion
During the 2016 dry season, the apparent conductivity measurements at 1 KHz and 4 KHz increased from February to April (Figures 4 and 5) in the Seven Palm system at monthly intervals. This reflects a general increase in apparent conductivities (salinity) in the groundwater over the dry season. This change is in response to decreased precipitation ( Figure 13). Similarly, the apparent conductivity of the 16 KHz data indicates a general increase in apparent conductivities (salinity) in the surface water over the dry season and from north to south along the profile line of the Seven Palm system. This change is due to reduced precipitation and increased potential evapotranspiration, which results in a sharp decrease in the water level as well ( Figure 13). The surface water salinities of the coastal lakes of ENP showed brackish to hypersaline salinities with higher salinities in the summer following the dry season [22,23]. Salinity variation in time and space in the Florida Bay is governed by the influence of precipitation [35] evapotranspiration, runoff, mass exchange with the surrounding basins [5], proximity of upstream freshwater sources, and exchange with Florida Bay marine waters downstream [22,23].  Between February 2016 and January 2017, the EM data show a considerable decrease in apparent conductivity in both the Seven Palm and West Lake system. A general decrease of 150 mS/m in Seven Palm system and 300 mS/m in Middle Lake (Figure 6a,b) suggests a freshening of the groundwater and may reflect the effects of increased flow due to restoration efforts. Lower conductivities observed in Cuthbert Lake compared to West Lake and Long Lake may reflect increases in freshwater flows from upstream sources, possibly from increased flows due to restoration efforts.
The apparent conductivity change between 2016 and 2017 in the Seven Palm system is more significant than the West Lake system. The apparent conductivity change decreased on average by 30% in the Seven Palm system and 10% in the West Lake system (Figure 8) at all frequencies. In general, in the coastal lakes of ENP, the decrease in apparent conductivity change is pronounced from west to east at all frequencies. This suggests the restoration efforts may have made a more observable contribution to the Seven Palm system but not yet in the West Lake system. Similarly, other studies conducted by the U.S. Geological Survey to map saltwater intrusion using helicopter electromagnetic (HEM) surveys identified variations in the apparent conductivity that were associated with changes in groundwater quality [39]. The apparent resistivity map (inversely related to conductivity) from the HEM survey showed a transition from low to high resistivity from West Lake to Seven Palm, i.e., high to low conductivity from west to east, which is consistent with the results of this study. The authors concluded the change is due to the influence of freshwater flowing in the Taylor Slough which pushes the transition in a southwesterly direction in the area of maximum flow [40]. A mean local formation factor of 10.7 ± 1.8 is estimated for the Mangrove Lakes of ENP. This estimated formation factor is similar to previously published estimates of formation factor 9.65 for the ENP [19]. We used the estimated formation factor 10.7 in this study to calculate the salinity of the groundwater. This approach has the advantage of forcing the geophysics derived salinities to be consistent with the in situ well measurements.
The surface water salinity increased from west to east, and the groundwater salinity decreased from west to east. In another study conducted by [41], in the Seven Palm system in July 2015, the surface water salinity ranged from 25 PSU in the northern tip of Seven Palm and gradually increased to 45 PSU in Monroe Lake. These hyper-salinity conditions are associated with drought and produced seagrass die-off [8,41]. In July 2019, the surface water salinity ranged from 5 PSU in the northern tip of Seven Palm and gradually increased to 49 PSU in Monroe Lake. Generally, in the West Lake system, the surface water salinity is lower than the groundwater salinity, but in the Seven Palm system, the surface water salinity is higher than the groundwater salinity ( Figure 12A). In addition, in both lakes, the salinity of the surface water and groundwater increased from north to south. This result suggests a freshening of the groundwater and may reflect the effects of increased flow due to restoration efforts.
In the Mangrove Lakes of ENP, surface water salinity is driven by seasonally variable winds and evaporation, whereas groundwater salinity is less temporally variable and reflects regional groundwater flow. In the EM data, the apparent conductivity change of the surface water is significant compared to the groundwater (Figure 7). In the VES data, viewed in a west to east profile, less saline surface water in West Lake overlies more saline groundwater ( Figure 11). In contrast, in Seven Palm Lake, the vertical salinity profile is inverted with denser, more saline surface water overlying less dense, fresher groundwater. This inverted salinity profile is gravitationally unstable and likely has a profound effect on recharge and discharge mechanisms to and from the aquifer. These results suggest the floating electrical resistivity array can map the resistivity of the subsurface formation effectively.
Some limitations of the estimated formation factor and EM measurements include the following. In the Mangrove Lakes of ENP, the shallow wells only extended to the base of the peat layer and did not penetrate the underlying limestone. This method assumes that the groundwater sampled from the wells is derived from the underlying limestone. Furthermore, repeated measurements would be useful to determine the accuracy of the estimated formation factor value with minimum standard deviation.
In the EM data, the apparent conductivities at certain locations where the EM survey line crosses have different measurements. This difference could be due to instrument drift, the operator changing position during the survey which affects the position of the coils, and calibration problems after Bluetooth connection failure which causes a new calibration in different environmental settings. Furthermore, the EM result is not inverted as the inverted model is not consistently reliable. As a result, the EM data are presented in apparent conductivity. The authors of [42] suggested that discrepancies in inversion for soils having a high surface electrical conductivity relative to deeper depths using EM 38 can be compensated through the vertical or horizontal coil configuration response curve. The EM method provides a faster alternative to DC soundings [16], but it is sensitive to electromagnetic noise produced by metals, pipelines, etc. An integrated approach of electrical resistivity and EM methods can produce the best result [43]. In a saline environment, once areas of high salinity are delineated, alternative methods of salinity measurement can be utilized to provide a detailed description of the study area [42]. Therefore, an integrated approach of using EM, resistivity, and other geological information is necessary to characterize the subsurface formation accurately.

Conclusions
Geophysical methods can map the difference in conductivities (salinity) of a subsurface formation effectively. The results of the EM survey show the apparent conductivity measurements systematically increased from February to April 2016 in the Seven Palm system. This demonstrates how the salinity of the surface water and groundwater changes during the dry season. The general increase in the salinity reflects a decreased precipitation, increased evapotranspiration, and the influence of saline water from Florida Bay on the surface water and groundwater. The apparent conductivity showed a considerable decrease between February 2016 and January 2017 in both the West Lake and Seven Palm systems. These changes suggest a freshening of the groundwater and may reflect the effects of increased flow due to restoration efforts. Furthermore, the apparent conductivity change between 2016 and 2017 is more pronounced in the Seven Palm system than in the West Lake system. This suggests the restoration efforts may have made a positive contribution to the Seven Palm system but not yet to the West Lake system.
The floating resistivity survey efficiently characterized the spatial variations in surface water groundwater salinity. In general, both the surface water and the groundwater increased in salinity from north to south. In contrast, the surface water salinity increased from west to east while the groundwater salinity decreased from west to east.
We estimated a mean local formation factor of 10.7 ± 1.8 for the coastal lakes of ENP. This estimated formation factor is slightly higher than the average regional formation factor of 9.65 estimated in another study [18]. The fact that the formation factor is obtained from few measurements may limit the finding of the salinity value in the coastal lakes of ENP. Hence, a further research study is needed to determine the accuracy of the estimated formation factor with minimum standard deviation. Another limitation of this study could be that the groundwater wells are situated approximately 1 m deep and may not represent the deeper groundwater.  Data Availability Statement: Data will be available to readers upon reasonable request.