Characterization of Fiber-Type Composition and Phosphoproteins of Fast- and Slow-Growing Broilers
Simple Summary
Abstract
1. Introduction
2. Materials and Methods
2.1. Ethical Approval
2.2. Animal Slaughter and Sample Collection
2.3. Immunohistochemistry Analysis
2.4. Purification of Total RNA and Relative mRNA Quantification
2.5. Phosphoproteomic Analysis
2.5.1. Protein Extraction, Digestion and Tandem Mass Tag (TMT) Labeling
2.5.2. Phosphopeptide Enrichment and LC-MS/MS Analysis
2.5.3. Bioinformatic Analysis
2.6. Statistical Analysis
3. Results
3.1. Muscle Fiber Type of Chicken Skeletal Muscles
3.2. Phosphoprotein Identification and Motif Analysis
3.3. Hierarchical Clustering Analysis
3.4. GO Functional Classification of Differentially Phosphorylated Proteins
3.5. KEGG Pathway Analysis of Differentially Phosphorylated Proteins
3.6. Functional Annotation Analysis of Key Differentially Regulated Phosphoproteins
4. Discussion
5. Conclusions
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Conflicts of Interest
References
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| Ross 308 Broiler | Xueshan Chicken | SEM | p-Value | |||||
|---|---|---|---|---|---|---|---|---|
| SOL | EDL | SOL | EDL | Breed | Muscle Type | Breed × Muscle Type | ||
| Type II fiber, μm | 13.94 | 7.78 | 8.72 | 10.43 | 0.15 | <0.001 | <0.001 | <0.001 |
| Type I fiber, μm | 11.17 | 8.80 | 8.86 | 10.37 | 0.17 | 0.024 | 0.011 | <0.001 |
| Mean (I + II), μm | 12.62 | 8.32 | 8.77 | 10.40 | 0.12 | <0.001 | <0.001 | <0.001 |
| Fiber cross-sectional area, μm2 | 206.65 | 117.76 | 92.66 | 140.07 | 7.77 | <0.001 | 0.0081 | <0.001 |
| Type I fiber area percentage,% | 13.51 | 6.14 | 13.33 | 15.52 | 1.44 | 0.016 | 0.970 | 0.023 |
| Type II fiber area percentage, % | 86.49 | 93.86 | 86.66 | 84.47 | 1.44 | 0.016 | 0.970 | 0.023 |
| Accession | Protein/Gene Name | Sequence | Positions Within Proteins | Amino Acid | Fold Change | p-Value |
|---|---|---|---|---|---|---|
| EDL VS SOL in Ross 308 broiler | ||||||
| Q5F426 | Pyruvate dehydrogenase E1 component subunit alpha/PDHA1 | PCIFICENNRYGMGTSVERAAASTDYYKRGD | 239 | S | 2.445 | 0.011 |
| A0A3Q3A7X1 | Uncharacterized protein/ABLIM2 | GTTAMYSRFPYSKSTSLPGYGRNGLHQPENM | 512 | S | 2.023 | 0.014 |
| A0A1D5P1V6 | Phosphorylase b kinase regulatory subunit/PHKB | DVSWKMLELRARTKRSGSIYEPLKSINLPKP | 29 | S | 1.437 | 0.031 |
| A0A1D5P1V6 | Phosphorylase b kinase regulatory subunit/PHKB | ELDLPKHSKVKRQSSTPNASELEQQPDININ | 706 | T | 1.360 | 0.022 |
| A0A1D5P1V6 | Phosphorylase b kinase regulatory subunit/PHKB | PKHSKVKRQSSTPNASELEQQPDININDWKN | 710 | S | 1.288 | 0.013 |
| F1NN63 | Uncharacterized protein/PGM1 | IIRKIKAIGGIILTASHNPGGPNGDFGIKFN | 117 | S | 1.298 | 0.044 |
| A6BM71 | Connectin (Fragment)/TTN | TPSPADAERRKLRPGSGGEKPPEEPPFTYQL | 5333 | S | 0.556 | 0.022 |
| EDL in Xueshan chicken VS EDL in Ross 308 broiler | ||||||
| Q5ZLN1 | Phosphoglycerate mutase 1/PGAM1 | TAAKHGEAQVKIWRRSFDIPPPPMQSDHPFF | 118 | S | 0.660 | 0.022 |
| P11009 | Creatine kinase S-type, mitochondrial/CKMT2 | RFPKILENLRLQKRGTGGVDTAAVADVYDIS | 356 | T | 0.654 | 0.046 |
| A0A3Q3AWG5 | Uncharacterized protein/MYBPC1 | FQGRPRAKVSWQKNGSPIDKNQINIRNTEND | 891 | S | 0.595 | 0.048 |
| A6BM71 | Connectin (Fragment)/TNN | PVRQSPSPVRHVRAPTPSPVRSVSPAGRIST | 301 | T | 0.566 | 0.042 |
| A0A1D5P525 | Myosin-1B/MYH1B | LETLKRENKNLQQEISDLTEQIAEGGKAIHE | 1515 | S | 0.487 | 0.017 |
| A0A1D5P1V6 | Phosphorylase b kinase regulatory subunit/PHKB | DVSWKMLELRARTKRSGSIYEPLKSINLPKP | 29 | S | 0.472 | 0.017 |
| A0A1L1RXW8 | Troponin T, fast skeletal muscle isoforms/TNNT3 | EIVTLRNRIDQAQKHSKKAGAKGKVGGRWK_ | 206 | S | 0.437 | 0.034 |
| Q03669 | Sarcoplasmic/endoplasmic reticulum calcium ATPase 2/ATP2A2 | RCTHVRVGNAKIPLSSGIKQKIMSVIREWGT | 538 | S | 0.369 | 0.006 |
| Q8UWA0 | Myosin heavy chain/SSMHC | YEEEVEAKSELQRNLSKANAEVAQWRTKYET | 1370 | S | 0.352 | 0.033 |
| Q5F426 | Pyruvate dehydrogenase E1 component subunit alpha/PDHA1 | PCIFICENNRYGMGTSVERAAASTDYYKRGD | 239 | S | 0.272 | 0.002 |
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Li, Y.; Huo, W.; Weng, K.; Liu, J.; Gu, Y.; Cai, Y.; Zhang, Y.; Zhang, Y.; Hu, X.; Chen, G.; et al. Characterization of Fiber-Type Composition and Phosphoproteins of Fast- and Slow-Growing Broilers. Animals 2026, 16, 1311. https://doi.org/10.3390/ani16091311
Li Y, Huo W, Weng K, Liu J, Gu Y, Cai Y, Zhang Y, Zhang Y, Hu X, Chen G, et al. Characterization of Fiber-Type Composition and Phosphoproteins of Fast- and Slow-Growing Broilers. Animals. 2026; 16(9):1311. https://doi.org/10.3390/ani16091311
Chicago/Turabian StyleLi, Yi, Weiran Huo, Kaiqi Weng, Jinlu Liu, Yingjie Gu, Yuchun Cai, Yang Zhang, Yu Zhang, Xuming Hu, Guohong Chen, and et al. 2026. "Characterization of Fiber-Type Composition and Phosphoproteins of Fast- and Slow-Growing Broilers" Animals 16, no. 9: 1311. https://doi.org/10.3390/ani16091311
APA StyleLi, Y., Huo, W., Weng, K., Liu, J., Gu, Y., Cai, Y., Zhang, Y., Zhang, Y., Hu, X., Chen, G., & Xu, Q. (2026). Characterization of Fiber-Type Composition and Phosphoproteins of Fast- and Slow-Growing Broilers. Animals, 16(9), 1311. https://doi.org/10.3390/ani16091311

