Molecular Rewiring of the Jasmonate Signaling Pathway to Control Auxin-Responsive Gene Expression

The plant hormone jasmonic acid (JA) has an important role in many aspects of plant defense response and developmental process. JA triggers interaction between the F-box protein COI1 and the transcriptional repressors of the JAZ family that leads the later to proteasomal degradation. The Jas-motif of JAZs is critical for mediating the COI1 and JAZs interaction in the presence of JA. Here, by using the protoplast transient gene expression system we reported that the Jas-motif of JAZ1 was necessary and sufficient to target a foreign reporter protein for COI1-facilitated degradation. We fused the Jas-motif to the SHY2 transcriptional repressor of auxin signaling pathway to create a chimeric protein JaSHY. Interestingly, JaSHY retained the transcriptional repressor function while become degradable by the JA coreceptor COI1 in a JA-dependent fashion. Moreover, the JA-induced and COI1-facilitated degradation of JaSHY led to activation of a synthetic auxin-responsive promoter activity. These results showed that the modular components of JA signal transduction pathway can be artificially redirected to regulate auxin signaling pathway and control auxin-responsive gene expression. Our work provides a general strategy for using synthetic biology approaches to explore and design cell signaling networks to generate new cellular functions in plant systems.


Introduction
Being autotrophic and fixed in space, plants are under relentless challenges by numerous environmental stresses. Plant development and growth are superplastic in response to changing environments. Upon detection of dangers, plants carry out multiple layers of response to coordinate development and defense, orchestrated by an elegantly organized signaling network of phytohormones, such as auxin that acts as a general coordinator of plant development and jasmonic acid that mainly regulates plant response to environmental stimuli [1][2][3].
Over recent years, mounting lines of studies revealed extensive crosstalk, either synergistic or antagonistic, among different hormonal signaling pathways [4]. For instance, JA can directly activate the expression of genes that are involved in auxin biosynthesis to regulate tissue regeneration and lateral root formation in Arabidopsis [5][6][7]. While, on the other hand, auxin stimulates adventitious root formation on Arabidopsis hypocotyls by inducing expression of genes encoding enzymes that are involved in inactivating JA or reducing JA accumulation [8]. However, the molecular mechanisms underlying signaling crosstalk are remain poorly understood. Elucidating hormone signaling pathways is not only important for understanding fundamental questions in plant biology but also crucial for breeding programs to enhance stress tolerance and improve yield performance in agricultural crops. For instance, exogenously applied methyl jasmonate effectively improves the drought tolerance in soybean (Glycine max L. Merrill) [9], wheat (Triticum aestivum L.) [10], and rice (Oryza sativa subsp. japonica) [11]. Recently, Zhang et al. succeeded in engineering the JA coreceptor COI1 that allows for endogenous JA signaling but with reduced sensitivity to pathogen produced phytotoxin [12]. Transgenic Arabidopsis plants expressing this modified COI1 show better resistance to disease-causing pathogens such as Pseudomonas syringae.
Under normal growth conditions when JA levels are low, JA-responsive genes are actively repressed by the JAZ repressors which physically associate with JA-network MYC transcription factors. Arabidopsis genome encodes 13 JAZ repressors [29]. JAZs belong to the plant-specific TIFY protein family which is defined by the presence of TIFY-motif within a larger conserved ZIM domain [30,31]. The TIFY-motif is involved in mediating the JAZ interaction with Novel Interactor of JAZ (NINJA). NINJA serves as an adaptor protein to recruit the TOPLESS (TPL) and TPL-related (TPR) transcriptional corepressors [32]. TPL and TPRs are members of the evolutionarily conserved Groucho/Tup1-type corepressor family that coordinate the formation of transcriptional repression complexes with histone-modifying enzymes such as histone deacetylases (HDACs), resulting in a suppressive chromatin state inaccessible to transcription machineries [33,34]. Therefore, the JAZ-NINJA-TPL complex represses MYC transcriptional activity through recruitment of HDACs in order to restrain JA response. Upon pathogen or insect attack when JA concentration reaches a threshold in the cell, JA directly triggers COI1 binding to JAZ proteins, resulting in the ubiquitination and subsequent degradation of JAZ repressors via the 26S proteasome thereby releasing MYC-dependent transcription of JA-regulated genes. Protein ubiquitination is an important post-translational process that is regulated by at least three main families of enzymes: ubiquitin activating enzymes (E1), ubiquitin conjugating enzymes (E2) and ubiquitin ligases (E3) [35]. Protein substrates are specifically recruited by the E3 ligases to the proximity of E2, which attaches the ubiquitin moiety to a lysine residue in the targets [36]. Targets may be monoubiquitinated by single ubiquitin in one position or several positions, or polyubiquitinated by a chain of ubiquitin polymers. So far, ubiquitination sites in JAZ proteins have not been identified. In addition to containing a central ZIM domain, JAZ proteins also contain a highly conserved C-terminal JA associated-(Jas-) motif [29]. The Jas-motif was found to be the minimal region being indispensable and adequate to mediate the JAZ-COI1 interaction.
Interestingly, the growth hormone auxin and the defense hormone JA share mechanistically conserved ligand perception and signal transduction mechanisms [37]. Auxin is perceived by a protein complex containing the F-box protein Transport Inhibitor Response 1 (TIR1) and the auxin/indole-3-acetic acid (Aux/IAA) transcriptional repressor proteins [38,39]. The Aux/IAA proteins directly interact with TPL corepressors through an ethylene response factor-associated amphiphilic repression (EAR) motif to form the Aux/IAA-TPL repressive complex that represses auxin response factors (ARFs) at the promoter region of auxin response genes [40]. In the presence of auxin, Aux/IAA repressors are ubiquitinylated by the SCF TIR1 complex [41]. IAA6 and IAA19 of the Aux/IAA family are conjugated with polymeric ubiquitin chains at multiple lysine residues [42]. Polyubiquitination of Aux/IAAs leads them to degradation by the 26S proteasome pathway. Degradation of Aux/IAA releases the transcriptional activity of ARF regulators.
Previously, we have reconstituted the core JA signaling pathway in transiently transformed protoplasts [43]. Analysis of the stability of a JAZ1-fLuc fusion protein Li et al. recapitulated the JA-induced degradation of JAZ1 repressor by COI1 and confirmed that the Jas-motif was important for this degradation. The protoplast transient gene expression system offers invaluable opportunities for studying subcellular protein localization, transcriptional regulation, genome editing, and plant synthetic biology [44,45]. Because of its flexibility and convenience, protoplast expression system has become a useful tool for analyzing cellular signaling mechanisms. Using a similar approach, we investigated the stability of a Jas-fLuc fusion protein in Arabidopsis protoplast cells and determined that the Jas-motif alone is necessary and sufficient to mark the nonrelated fLuc reporter to targeted protein degradation. This result further inspired attempts to artificially connect the JA signaling cascade to manipulate gene expression of the auxin pathway by tagging the Jas-motif to the Aux/IAA proteins. Our study provides the basis for generating further understanding of the molecular and cellular mechanisms of hormone action, which could eventually facilitate strategies for crop engineering to produce more and better foods.

Molecular Cloning
Two types of reporter vector were used in this study: the protein-fusion reporter vector and the promoter-driven reporter vector. The GATEWAY (GW) destination vector UBQ10pro:HA-GW-fLuc [43] was used to clone protein-fusion reporter vectors. The Jas-motif coding sequence of JAZ1 (Jas) was obtained by polymerase chain reaction (PCR) using pDONR207-JAZ1 [43] as template with primer set JAS-gw-d1/JASnostop-gw-r1(All primer sequences are listed in Table 1). The Jas AA mutant variant was amplified by PCR with primer set JASA-gw-d1/JASnostop-gw-r1. The Jas and Jas AA PCR products flanked by the attB sequence were cloned into pDONR207 (Invitrogen, Carlsbad, CA, USA) according to the manufacturer's instructions. The resulting entry clone pDONR207-Jas and -Jas AA were recombined with the destination vector to produce the final protein-fusion reporter vectors UBQ10pro:Jas-fLuc and UBQ10pro:Jas AA -fLuc. The SHY2 gene coding sequence was obtained by PCR using pDONR207-SHY2 (pDONR207-IAA3) [48] as template with primer set SHY2-gw-d1/SHY2nostop-gw-r1. The PCR product flanked by the attB sequence were cloned into pDONR207, yielding the entry clone pDONR207-SHY2nostop. Three PCR reactions were used to obtain the JaSHY chimera coding sequence, one reaction used the pDONR207-Jas as template with primer set SeqL1/JASHY-r1 to amplify a Jas sequence that encloses a 5 -portion of SHY2 coding sequence. A second PCR reaction used pDONR207-SHY2nostop as template with primer set JASHY-d1/SeqL2 to amplify the SHY2 coding sequence that encloses a 3 -portion of Jas coding sequence. The PCR products from these two reactions contain complementary sequences that allow the products to anneal as template in a third PCR reaction with primer set SeqL1/SeqL2. The chimeric product containing the attL sequence was directly recombined with the destination vector to produce the protein-fusion reporter vector UBQ10pro:JaSHY-fLuc.
The GW destination vector pBGWFL7 [49] was used to clone promoter-driven reporter vector. The DR5 promoter sequence was amplified from the DR5-GUS construct [50] with primer set DR5-gw-d1/DR5-gw-r1. The PCR product containing DR5 promoter sequence was cloned into pDONR207, resulting entry clone pDONR207-DR5pro for recombing with the destination vector pBGWFL7 to produce the promoter-driven reporter vector DR5pro:fLuc.

Protoplast Transfection and Dual Luciferase Report Assay
Protoplast transfection and dual luciferase assay were performed as described previously in [43,51]. Briefly, 5 µg of protein-fusion reporter plasmids or promoter-driven reporter plasmids and 5 µg of effector plasmids were co-transfected. To normalize for the experimental variability, 1 µg of the reference plasmids UBQ10pro:rLuc [48] were added to each transfection. The empty effector plasmids UBQ10pro:HA [48] lacking the GATEWAY cassette were added, when necessary, to provide for equal amounts of total DNA in each transfection experiment. Luc activities were determined 16 h after transfection of protoplasts using the Dual-Luciferase Reporter Assay System (Promega, Mannheim, Germany) and the Centro XS 3 LB 960 Microplate Luminometer from Berthold Technologies (Bad Wildbad, Germany).

The Jas-Motif Is Sufficient to Target Luciferase Reporter for Degradation
Previously, we developed a transient gene expression system in Arabidopsis coi1 mutant protoplasts, by which the core JA signaling pathway was successful reconstituted [43]. The JAZ1 repressor of JA signaling pathway was degraded via the 26S proteasome in a JA-induced and COI1-facilitated manner in the protoplast reconstitution assay. The Jas-motif of JAZ1 protein (referred to as Jas) was required for the JA-dependent interaction with COI1 [29]. Substitution mutations at critical residues of Jas abolish COI1-JAZ1 interaction and confer JAZ1 protein resistant to JA [43].
To determine whether Jas is not only necessary for JAZ1 degradation, but also sufficient for targeting a heterologous protein for degradation, the 27 aa Jas coding sequence was placed in frame upstream of firefly luciferase (fLuc) for translational fusion and the Arabidopsis UBQ10 promoter was placed upstream of the fusion protein coding region, creating the protein-fusion reporter construct UBQ10pro:Jas-fLuc ( Figure 1A). The protein-fusion reporter construct was transfected alone or together with the effector construct UBQ10pro:COI1 ( Figure 1B). As shown in Figure 2B, the Jas-fLuc activity was dramatically decreased in the presence of COI1 in coi1 mutant protoplasts. This result suggests that the Jas sequence that requires for JAZ1 degradation is capable of functioning as a transferable degradation signal targeting the fLuc reporter protein for proteolysis. In order to check whether the Jas-mediated fLuc degradation is JA dependent or not, the two critical arginine residues (R 205 R) of Jas required for COI1-JA-JAZ1 complex formation was exchanged into alanines (A 205 A) (Figure 2A), creating the Jas AA -fLuc reporter protein. Interestingly, these amino acid substitutions did not affect Jas AA -fLuc protein accumulation in coi1 protoplasts but caused the reporter protein insensitive to COI1 ( Figure 2B). This result indicates the importance of JA in conferring Jas-mediated fLuc degradation. Thus, we determined in Arabidopsis protoplasts that Jas alone is sufficient for JA-induced and COI1-mediated protein degradation, which could be used to develop a JA-inducible protein depletion system. Protein abundance reflects the balance between protein synthesis and protein degradation. The classical cycloheximide chase experiment in combination with MG132 treatment, however, is further required to confirm exclusively that the observed decrease of fLuc activity is indeed linked to the degradation of the fusion protein via the 26S proteasome pathway. Previously, Larrieu et al. fused the Jas-motif of JAZ9 (Jas9) to the VENUS variant of the yellow fluorescent protein (YFP) to generate a JA biosensor named Jas9-VENUS that allows quantitative detection of JA distribution in Arabidopsis with high spatiotemporal sensitivity [52]. The Jas-fLuc reporter has the potential to serve as a biosensor for nondestructive detection of the spatial and temporal JA distribution in vivo and in real time.
Cells 2020, 9, x 5 of 12 as Jas) was required for the JA-dependent interaction with COI1 [29]. Substitution mutations at critical residues of Jas abolish COI1-JAZ1 interaction and confer JAZ1 protein resistant to JA [43].
To determine whether Jas is not only necessary for JAZ1 degradation, but also sufficient for targeting a heterologous protein for degradation, the 27 aa Jas coding sequence was placed in frame upstream of firefly luciferase (fLuc) for translational fusion and the Arabidopsis UBQ10 promoter was placed upstream of the fusion protein coding region, creating the protein-fusion reporter construct UBQ10pro:Jas-fLuc ( Figure 1A). The protein-fusion reporter construct was transfected alone or together with the effector construct UBQ10pro:COI1 ( Figure 1B). As shown in Figure 2B, the Jas-fLuc activity was dramatically decreased in the presence of COI1 in coi1 mutant protoplasts. This result suggests that the Jas sequence that requires for JAZ1 degradation is capable of functioning as a transferable degradation signal targeting the fLuc reporter protein for proteolysis. In order to check whether the Jas-mediated fLuc degradation is JA dependent or not, the two critical arginine residues (R205R) of Jas required for COI1-JA-JAZ1 complex formation was exchanged into alanines (A205A) (Figure 2A), creating the Jas AA -fLuc reporter protein. Interestingly, these amino acid substitutions did not affect Jas AA -fLuc protein accumulation in coi1 protoplasts but caused the reporter protein insensitive to COI1 ( Figure 2B). This result indicates the importance of JA in conferring Jas-mediated fLuc degradation. Thus, we determined in Arabidopsis protoplasts that Jas alone is sufficient for JA-induced and COI1-mediated protein degradation, which could be used to develop a JA-inducible protein depletion system. Protein abundance reflects the balance between protein synthesis and protein degradation. The classical cycloheximide chase experiment in combination with MG132 treatment, however, is further required to confirm exclusively that the observed decrease of fLuc activity is indeed linked to the degradation of the fusion protein via the 26S proteasome pathway. Previously, Larrieu et al. fused the Jas-motif of JAZ9 (Jas9) to the VENUS variant of the yellow fluorescent protein (YFP) to generate a JA biosensor named Jas9-VENUS that allows quantitative detection of JA distribution in Arabidopsis with high spatiotemporal sensitivity [52]. The Jas-fLuc reporter has the potential to serve as a biosensor for nondestructive detection of the spatial and temporal JA distribution in vivo and in real time.   In plants, the signaling pathway of JA strikingly resembles to that of auxin, in which the F-box protein, TIR1 of the auxin pathway or COI1 of the JA pathway, forms SCF TIR1 or SCF COI1 protein complex that recognizes the JAZ or Aux/IAA transcriptional repressors of respective pathways to regulate plant responses [37,53]. In the presence of auxin, TIR1 binds to Aux/IAA to facilitate ubiquitination and proteasomal degradation of Aux/IAA. The conserved Domain II (known as degron) of Aux/IAA proteins was determined to be the minimal sequence that is sufficient to mediate TIR1 and Aux/IAA interaction. The auxin-inducible protein degradation (AID) system was developed as a tool to conditionally control protein stability in nonplant systems [54][55][56][57]. Analogously, it is possible to develop a JA-inducible protein degradation (JID) system to control protein function in a tunable way.

The Jas-Tagging Leads the Aux/IAA Protein SHY2 to be Degraded by the JA Coreceptor COI1
As a proof of concept to develop a functional JA-inducible protein degradation (JID) system, we fused Jas to the Aux/IAA protein SHORT HYPOCOTYL2 (SHY2, also known as IAA3) and placed the chimeric protein Jas-SHY2 (JaSHY for short) upstream of fLuc to create the JaSHY-fLuc fusion reporter. Expression of the fusion reporter was put under the control of the UBQ10 promoter (UBQ10pro:JaSHY-fLuc, Figure 1A). SHY2, a canonical Aux/IAA protein from Arabidopsis, was selected for this assay because SHY2 is important in multiple auxin responses, as demonstrated by identification of an auxin response mutant shy2 which showed a plethora of pleiotropic growth phenotypes, such as short wavy roots, enlarged cotyledons, short hypocotyls, and extremely dwarfed plants with curled leaves [58][59][60]. Again, JaSHY-fLuc was expressed alone or together with the effector COI1 in coi1 protoplasts. Co-expression of COI1 strongly decreased the JaSHY-fLuc activity (Figure 3). Control experiments were performed using a mutant effector COI1 lrr13 . In order not to disrupt protein folding, critical residues of the COI1 13th LRR-motif (YMA384VYV) involved in JA-Ile binding were substituted with the motif SVL378YFC found in the structurally related auxin receptor TIR1 [43]. Since this mutant derivate cannot bind to JA, COI1 lrr13 had no effect on JaSHY-fLuc reporter accumulation (Figure 3), demonstrating that Jas tag specifically recruited JaSHY-fLuc to SCF COI1 . These results indicate that the COI1-mediated degradation of JaSHY-fLuc reporter protein is JA-dependent. In plants, the signaling pathway of JA strikingly resembles to that of auxin, in which the F-box protein, TIR1 of the auxin pathway or COI1 of the JA pathway, forms SCF TIR1 or SCF COI1 protein complex that recognizes the JAZ or Aux/IAA transcriptional repressors of respective pathways to regulate plant responses [37,53]. In the presence of auxin, TIR1 binds to Aux/IAA to facilitate ubiquitination and proteasomal degradation of Aux/IAA. The conserved Domain II (known as degron) of Aux/IAA proteins was determined to be the minimal sequence that is sufficient to mediate TIR1 and Aux/IAA interaction. The auxin-inducible protein degradation (AID) system was developed as a tool to conditionally control protein stability in nonplant systems [54][55][56][57]. Analogously, it is possible to develop a JA-inducible protein degradation (JID) system to control protein function in a tunable way.

The Jas-Tagging Leads the Aux/IAA Protein SHY2 to Be Degraded by the JA Coreceptor COI1
As a proof of concept to develop a functional JA-inducible protein degradation (JID) system, we fused Jas to the Aux/IAA protein SHORT HYPOCOTYL2 (SHY2, also known as IAA3) and placed the chimeric protein Jas-SHY2 (JaSHY for short) upstream of fLuc to create the JaSHY-fLuc fusion reporter. Expression of the fusion reporter was put under the control of the UBQ10 promoter (UBQ10pro:JaSHY-fLuc, Figure 1A). SHY2, a canonical Aux/IAA protein from Arabidopsis, was selected for this assay because SHY2 is important in multiple auxin responses, as demonstrated by identification of an auxin response mutant shy2 which showed a plethora of pleiotropic growth phenotypes, such as short wavy roots, enlarged cotyledons, short hypocotyls, and extremely dwarfed plants with curled leaves [58][59][60]. Again, JaSHY-fLuc was expressed alone or together with the effector COI1 in coi1 protoplasts. Co-expression of COI1 strongly decreased the JaSHY-fLuc activity (Figure 3). Control experiments were performed using a mutant effector COI1 lrr13 . In order not to disrupt protein folding, critical residues of the COI1 13th LRR-motif (YMA 384 VYV) involved in JA-Ile binding were substituted with the motif SVL 378 YFC found in the structurally related auxin receptor TIR1 [43]. Since this mutant derivate cannot bind to JA, COI1 lrr13 had no effect on JaSHY-fLuc reporter accumulation (Figure 3), demonstrating that Jas tag specifically recruited JaSHY-fLuc to SCF COI1 . These results indicate that the COI1-mediated degradation of JaSHY-fLuc reporter protein is JA-dependent. So far, by tagging Jas to SHY2, we were able to destroy a repressor of the auxin signaling pathway in a JA-inducible way. Despite this interest, fundamental questions remain regarding the potency and efficacy of JA-induced and Jas-mediated binding of SHY2 to COI1. And, particularly, whether a Jas tag at the N-terminus impinges SHY2 protein function requires further clarification. Our work only represented preliminary results of this concept in isolated protoplast cells.

Degradation of the JaSHY Chimeric Repressor Liberates ARF7 Transcription Activity
Auxin signaling involves the activation of gene expression by a bevy of ARF factors that bind to canonical auxin response elements (AuxREs) in auxin-responsive gene promoters [50]. The Aux/IAA proteins negatively modulate auxin-regulated gene expression as transcriptional repressors through heterodimerization with the ARF transcription activators. The release of ARF repression in the presence of auxin by the proteasomal degradation of their cognate Aux/IAA repressors elicits a rapid transcriptional change [61]. The ARF7-SHY2 signaling module plays a crucial role in many aspects of plant growth and development [62][63][64]. Since by introducing a Jas-tag the SHY2 repressor become degradable by the JA coreceptor COI1 (Figure 3), we sought to rewire the JA signaling pathway to modulate expression of auxin-responsive gene. We first confirmed that in protoplasts ARF7 strongly activated the fLuc reporter gene under control of the synthetic auxin-responsive promoter DR5 (DR5pro:fLuc; Figure 1C) as manifested by the increased fLuc bioluminescence (Figure 4). Both SHY2 and JaSHY chimeric repressor drastically repressed the ARF7-activated DR5 promoter activity to the same level ( Figure 4). However, by the addition of COI1, only JaSHY-but not SHY2-mediated repression was alleviated (Figure 4). These results indicate that the Jas-tag does not influence SHY2 repressive function and the specific removal of the JaSHY chimeric repressor by COI1 leads to the liberation of ARF7 transcriptional activity. Therefore, by tagging Jas to an auxin repressor, we could manipulate auxin-regulated gene expression in a JA-inducible and auxin-independent manner. So far, by tagging Jas to SHY2, we were able to destroy a repressor of the auxin signaling pathway in a JA-inducible way. Despite this interest, fundamental questions remain regarding the potency and efficacy of JA-induced and Jas-mediated binding of SHY2 to COI1. And, particularly, whether a Jas tag at the N-terminus impinges SHY2 protein function requires further clarification. Our work only represented preliminary results of this concept in isolated protoplast cells.

Degradation of the JaSHY Chimeric Repressor Liberates ARF7 Transcription Activity
Auxin signaling involves the activation of gene expression by a bevy of ARF factors that bind to canonical auxin response elements (AuxREs) in auxin-responsive gene promoters [50]. The Aux/IAA proteins negatively modulate auxin-regulated gene expression as transcriptional repressors through heterodimerization with the ARF transcription activators. The release of ARF repression in the presence of auxin by the proteasomal degradation of their cognate Aux/IAA repressors elicits a rapid transcriptional change [61]. The ARF7-SHY2 signaling module plays a crucial role in many aspects of plant growth and development [62][63][64]. Since by introducing a Jas-tag the SHY2 repressor become degradable by the JA coreceptor COI1 (Figure 3), we sought to rewire the JA signaling pathway to modulate expression of auxin-responsive gene. We first confirmed that in protoplasts ARF7 strongly activated the fLuc reporter gene under control of the synthetic auxin-responsive promoter DR5 (DR5pro:fLuc; Figure 1C) as manifested by the increased fLuc bioluminescence (Figure 4). Both SHY2 and JaSHY chimeric repressor drastically repressed the ARF7-activated DR5 promoter activity to the same level ( Figure 4). However, by the addition of COI1, only JaSHY-but not SHY2-mediated repression was alleviated (Figure 4). These results indicate that the Jas-tag does not influence SHY2 repressive function and the specific removal of the JaSHY chimeric repressor by COI1 leads to the liberation of ARF7 transcriptional activity. Therefore, by tagging Jas to an auxin repressor, we could manipulate auxin-regulated gene expression in a JA-inducible and auxin-independent manner.
In general, the auxin signaling pathway plays an important role in plant development, whereas the JA signaling pathway primarily regulates plant defense response. Increasing lines of evidence showed that sophisticated crosstalk between phytohormone signaling pathways fine-tunes the action of those hormones [4]. The JA and auxin signal transduction pathways are mutually antagonistic [65].
Defense-activated JA signaling pathway inevitably compromises auxin-regulated developmental processes [66]. However, by introducing JA-inducible degron to the Aux/IAA repressors, it could link the JA signaling pathway to control gene expression downstream of Aux/IAA regulators and achieve both JA and auxin responses simultaneously. In general, the auxin signaling pathway plays an important role in plant development, whereas the JA signaling pathway primarily regulates plant defense response. Increasing lines of evidence showed that sophisticated crosstalk between phytohormone signaling pathways fine-tunes the action of those hormones [4]. The JA and auxin signal transduction pathways are mutually antagonistic [65].
Defense-activated JA signaling pathway inevitably compromises auxin-regulated developmental processes [66]. However, by introducing JA-inducible degron to the Aux/IAA repressors, it could link the JA signaling pathway to control gene expression downstream of Aux/IAA regulators and achieve both JA and auxin responses simultaneously.

Conclusions
This work showed that the Jas-motif of JAZ1 protein is not only required but also sufficient to target an unrelated protein such as fLuc to SCF COI1 for degradation in plant protoplasts. By fusing the Jas-motif to the SHY2 transcriptional repressor of auxin signaling pathway, we developed a rapid experimental system to rewire the JA signaling pathway to control auxin-responsive gene expression ( Figure 5). To our knowledge, this is the first development of a JA-inducible protein degradation system and use of a plant hormone signaling pathway to control gene expression and potentially physiological response of another plant hormone. We envision that it even may be possible to employ this system to design crops that overcome the auxin-and JA-mediated growth-defense tradeoffs to grow substantially health and produce more food than the most productive varieties today.

Conclusions
This work showed that the Jas-motif of JAZ1 protein is not only required but also sufficient to target an unrelated protein such as fLuc to SCF COI1 for degradation in plant protoplasts. By fusing the Jas-motif to the SHY2 transcriptional repressor of auxin signaling pathway, we developed a rapid experimental system to rewire the JA signaling pathway to control auxin-responsive gene expression ( Figure 5). To our knowledge, this is the first development of a JA-inducible protein degradation system and use of a plant hormone signaling pathway to control gene expression and potentially physiological response of another plant hormone. We envision that it even may be possible to employ this system to design crops that overcome the auxin-and JA-mediated growth-defense tradeoffs to grow substantially health and produce more food than the most productive varieties today. Figure 4. The ARF7 transcriptional activity was released upon JaSHY degradation by COI1. Arabidopsis leaf protoplasts prepared from coi1 mutant plants were co-transfected with promoter-driven reporter plasmid DR5pro:fLuc and effector plasmids encoding ARF7, SHY2, JaSHY, or COI1 under the control of UBQ10 promoter. Firefly luciferase (fLuc) activities were normalized to Renilla luciferase (rLuc) activities. Reporter activities of fLuc without effector vector were set to one. Values represent means (±SE) of four independently transformed batches of protoplasts.
In general, the auxin signaling pathway plays an important role in plant development, whereas the JA signaling pathway primarily regulates plant defense response. Increasing lines of evidence showed that sophisticated crosstalk between phytohormone signaling pathways fine-tunes the action of those hormones [4]. The JA and auxin signal transduction pathways are mutually antagonistic [65].
Defense-activated JA signaling pathway inevitably compromises auxin-regulated developmental processes [66]. However, by introducing JA-inducible degron to the Aux/IAA repressors, it could link the JA signaling pathway to control gene expression downstream of Aux/IAA regulators and achieve both JA and auxin responses simultaneously.

Conclusions
This work showed that the Jas-motif of JAZ1 protein is not only required but also sufficient to target an unrelated protein such as fLuc to SCF COI1 for degradation in plant protoplasts. By fusing the Jas-motif to the SHY2 transcriptional repressor of auxin signaling pathway, we developed a rapid experimental system to rewire the JA signaling pathway to control auxin-responsive gene expression ( Figure 5). To our knowledge, this is the first development of a JA-inducible protein degradation system and use of a plant hormone signaling pathway to control gene expression and potentially physiological response of another plant hormone. We envision that it even may be possible to employ this system to design crops that overcome the auxin-and JA-mediated growth-defense tradeoffs to grow substantially health and produce more food than the most productive varieties today.