Background/Objectives:
NOTCH1 is frequently mutated in chronic lymphocytic leukemia (CLL) and is a marker of poor prognosis. In addition to
NOTCH1, mutations in the NOTCH1 regulatory pathway including
SPEN have been described in a limited number of CLL cases and others have
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Background/Objectives:
NOTCH1 is frequently mutated in chronic lymphocytic leukemia (CLL) and is a marker of poor prognosis. In addition to
NOTCH1, mutations in the NOTCH1 regulatory pathway including
SPEN have been described in a limited number of CLL cases and others have suggested that these mutations are also associated with adverse patient outcomes Methods: In this study, 1617 CLL cases were assessed using targeted sequencing and a 29-gene panel and the results were correlated with prognosis. Results:
SPEN mutations were detected in 48 (2.9%) CLL patients: 92.4% were deleterious (frameshift or truncating nonsense mutations) and the remaining (7.6%) were missense. Compared with
SPEN wild type CLL patients,
SPEN mutated patients had a statistically higher frequency of IGHV unmutated status (79.5% vs. 57.8%,
p = 0.004), CD38 positivity (73.3% vs. 52.4%,
p = 0.01), ZAP70 positivity (77.3% vs. 58.3%,
p = 0.01) and trisomy 12 (43.5% vs. 13.7%,
p < 0.001). The most common gene mutations co-occurring with
SPEN mutations were as follows:
NOTCH1 (43.7%),
TP53 (22.9%),
BIRC3 (12.5%),
SF3B1 (10.4%),
XPO1 (8.3%),
MUC2 (6.2%),
ATM (4.2%),
FBXW7 (4.2%), and
BTK (4.2%). Patients with
SPEN mutated CLL had a significantly shorter time-to-first treatment compared to CLL patients with wild type
SPEN (2.5 vs. 4.07 years,
p = 0.01). The finding of shorter time-to-first treatment in
SPEN mutated CLL patients was not maintained in a multivariable analysis. IGHV unmutated status,
TP53 disruption, and trisomy 12 remained independently predictive of a shorter time-to-first treatment in a multivariable analysis. Conclusions: These data show that
SPEN mutations in CLL are associated with adverse prognostic impact and should be included in sequencing assays performed for the prognostic workup of CLL patients.
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