The Influence of APOE Genotype, DHA, and Flavanol Intervention on Brain DHA and Lipidomics Profile in Aged Transgenic Mice

The apolipoprotein E4 (APOE4) genotype is predictive of Alzheimer’s disease (AD). The brain is highly enriched with the omega-3 polyunsaturated fatty acid (n3-PUFA), docosahexaenoic acid (DHA). DHA’s metabolism is defective in APOE4 carriers. Flavanol intake can play a role in modulating DHA levels. However, the impact of flavanol co-supplementation with fish oil on brain DHA uptake, status and partitioning, and according to APOE genotype is currently unknown. Here, using a humanised APOE3 and APOE4 targeted replacement transgenic mouse model, the interactive influence of cocoa flavanols (FLAV) and APOE genotype on the blood and subcortical brain PUFA status following the supplementation of a high fat (HF) enriched with DHA from fish oil (FO) was investigated. DHA levels increased in the blood (p < 0.001) and brain (p = 0.001) following supplementation. Compared to APOE3, a higher red blood cell (RBC) DHA (p < 0.001) was evident in APOE4 mice following FO and FLAV supplementation. Although FO did not increase the percentage of brain DHA in APOE4, a 17.1% (p < 0.05) and 20.0% (p < 0.001) higher DHA level in the phosphatidylcholine (PC) fraction in the HF FO and HF FO FLAV groups, and a 14.5% (p < 0.05) higher DHA level in the phosphatidylethanolamine (PE) fraction in the HF FO FLAV group was evident in these animals relative to the HF controls. The addition of FLAV (+/− FO) did not significantly increase the percentage of brain DHA in the group as a whole. However, a higher brain: RBC DHA ratio was evident in APOE3 only (p < 0.05) for HF FLAV versus HF. In conclusion, our data shows only modest effects of FLAV on the brain DHA status, which is limited to APOE3.


Introduction
The apolipoprotein E4 (APOE4) genotype is the strongest prevalent genetic determinant of Alzheimer's disease (AD) risk with heterozygotes (APOE3/E4) and homozygotes (APOE4/E4) carriers at 3-4-and 12-15-fold increased risk, respectively, relative to the "wildtype" APOE3/E3 genotype [1,2]. Despite this, the APOE4 allele remains predictive rather than deterministic, with half of APOE4/E4 never progressing to the development of AD [3]. This observed phenomenon suggests that environmental factors/circumstances may play a crucial role in APOE4-mediated AD development. Behavioural changes, such as dietary interventions, may modify or even prevent APOE4-mediated disease pathophysiology and ultimately cognitive decline.
The grey matter of the brain, particularly synaptic phospholipids, are docosahexaenoic acid (DHA)-rich, with several-fold higher DHA levels than in systemic tissue. The

Study Approval
All the experiments were approved by the Animal Welfare and Ethical Review Body (AWERB); approval date: 17th February 2016 under the project licence code: PPL 70/8710). The experiments were conducted within the provisions of the Home Office Animals (Scientific Procedures) Act 1986. The reporting of the results complies with the guidance of the Animal Research: Reporting of In Vivo Experiments (ARRIVE) guidelines. or APOE4 gene (Taconic, Germantown, NY, USA) were used in the experiments [32]. The mice were 10-months-old at the start of the experiments. They were maintained in a controlled environment as described previously [4]. In week 1, the animals were on a standard chow diet (RM3-P, Special Diets Services, Essex, UK). At week 2, the mice were assigned to five experimental groups and provided with one of the following diets (Research Diets Inc., New Brunswick, USA) for 22 weeks: a low fat diet (LF, 10 kcal%), a high fat diet (HF, 45 kcal%), a HF diet supplemented with fish oil (HF FO, 45 kcal% + 5.1 mg/g EPA/DHA; EPAX TGN, Oslo, Norway), a HF diet supplemented with cocoa flavanols (HF FLAV, 45 kcal% + 892 µg/g total cocoa flavanols from CHD-Q65ACTICOA-558; Barry Callebaut, Lebbeke-Wieze, Belgium) or a HF diet supplemented with a combination of both (HF FO FLAV). A full dietary composition is provided in the supplementary data (Supplementary Table S1). The doses of the n-3 polyunsaturated fatty acids and flavanols were chosen to be equivalent to a human diet. Using allometric scaling, the animals fed with FO received 9.2 mg/d EPA/DHA, equivalent to a 1.5 g/d human equivalent dose (HED), such as that found in a half-to-full portion of oily fish [33]. Similarly, the animals fed the FLAV diet received 3.1 mg/d of total cocoa flavanols of which 0.7 mg/d comprised catechin/epicatechin, which corresponds to a physiologically relevant HED of 508 mg/d of which 107 mg/d comprised catechin/epicatechin, which are the levels found in 33 g of FLAV-rich cocoa. All the diets were adjusted for caffeine (20 mg/d HED) and theobromine (157 mg/d HED), which are naturally present in cocoa.

Animals Experimental Design and Dietary Treatments
Food intake and body weight were recorded twice a week, three weeks prior to the intervention and for the duration of the intervention. Food pellets were replaced twice a week to avoid the oxidation of the bioactive compounds. At week 22, the mice were anaesthetised and blood was collected by cardiac puncture followed by the transcardiac perfusion of an ice-cold saline solution containing 10 IU/mL heparin (Sigma, Hertfordshire, UK). The plasma samples were isolated by centrifugation at 2000× g for 10 min and the samples were snap-frozen and stored at −80 • C. The brains were rapidly removed, bisected, snap-frozen, and stored at −80 • C. The half-brains were further dissected into corteces, hippocampi, subcortical regions, and cerebella, snap-frozen in liquid nitrogen and stored at −80 • C until further analysis.

Lipid Extraction and Fatty Acid Analysis in Red Blood Cells and Feeds
The total lipids were extracted according to the method of Folch et al. [34] as described before [35]. Fatty acid methyl esters (FAME) were prepared by the acid-catalyzed transesterification of the total lipids [36,37]. The samples were dried overnight in a desiccator then methylation was carried out using 1.25M HCL in methanol. The FAME were separated using 50% saturated KCL then purified by elusion through SPE silica cartridges (Clean-up 203 Cusil 156, UCT) using isohexane: diethylether (95:5). The FAME were evaporated under oxygen-free nitrogen and re-suspended in 500 µL of iso-hexane. The purified FAME were then separated by gas-liquid chromatography using a ThermoFisher Trace GC 2000 (ThermoFisher, Hemel Hempstead, UK). On-column injection was carried out using a fused silica capillary column (ZBWax, 60 m × 0.32 × 0.25 mm i.d.; Phenomenex, Macclesfield, UK) and hydrogen as a carrier gas. The temperature gradient was from 50 to 150 • C at 40 • C/min, and then to 195 • C at 1.5 • C/min, and finally to 220 • C at 2 • C/min. Individual methyl esters were identified by comparison to known standards (Supelco 37-FAME mix; Sigma-Aldrich Ltd., Poole, UK) and by reference to published data [38]. The data were analysed using the Chromcard software package (Thermoquest Italia, Milan, Italy). Individual fatty acids were reported as percentages (% total fatty acids). This was calculated by measuring the relative area % of the chromatogram peak generated by the individual fatty acid and dividing it by the sum of all the relative area % of all the fatty acids in the chromatogram. The fatty acid content per g of tissue (nmol/g) was calculated using heptadecanoic acid (17:0) as the internal standard. Both measurements are reported as it is important to consider brain fatty acid content as a percentage of the total fatty acids and relative to the weight of the total lipids when interpreting the physiological meaning of the altered status [39].

Lipid Extraction and Fatty Acid Analysis in Plasma
Fatty acids in the plasma were extracted by a method modified from Folch et al. [34]. Briefly, the samples and the internal standard docosatrienoic ethyl ester (22:3n-3) were homogenised by vortex in a solution of 2:1 chloroform: methanol. The mixtures were kept at 4 • C overnight and brought to room temperature the next day. Potassium chloride (0.88% (w/v)) was added to the separate phases. The bottom organic phase containing the total lipid extract was transferred into new test tubes and dried down under a stream of nitrogen. Fatty acids were transmethylated at 100 • C for one hour with 14% (v/v) boron trifluoride methanol. The FAME were quantified on a Varian 430 gas chromatograph (Bruker, Billerica, MA, USA) equipped with a SP-2560 biscyanopropyl siloxane capillary column (100 m length × 0.25 mm diameter × 0.2 µm film thickness; Supelco, Belle-fonte, PA, USA). Details of the chromatography set-up method have been described previously [40].

Brain Lipidomics Profile
Lipids were extracted from the subcortical region samples (n = 10) via a modified Bligh-Dyer extraction [41], using methanol/water/dichloromethane in the presence of deuterated internal standards, using the Metabolon TrueMass ® Complex Lipid Panel (Rowarth, UK).
The extracts were dried under nitrogen and reconstituted in ammonium acetate dichloromethane: methanol. The extracts were transferred to vials for infusion-MS analysis, performed on a Shimadzu LC with nano PEEK tubing and the Sciex SelexIon-5500 QTRAP. The samples were analysed via both a positive and negative mode electrospray. The 5500 QTRAP was operated in MRM mode with a total of more than 1100 MRMs. Individual lipid species were quantified by taking the ratio of the signal intensity of each target compound to that of its assigned internal standard, then multiplying by the concentration of the internal standard added to the sample. The lipid class concentrations were calculated from the sum of all the molecular species within a class, and the fatty acid compositions were determined by calculating the proportion of each class comprised of individual fatty acids.

Statistical Analysis
Body weight and fatty acids data are presented as means ± SEM. The data analysis was performed using one-way and two-way ANOVAs. Standard diagnostic tests (e.g., the normality of residuals assessed using quantile-quantile plots and Shapiro-Wilk tests, outlier tests, high-leverage/influence data points tested using Cook's distance) were used to verify that the data were appropriate for ANOVA analysis. Where necessary, transformations were applied to the response variance to ensure that the data complied with the ANOVA assumptions. If transformations could not be applied to ensure the normality of data, appropriate non-parametric statistical techniques (e.g., the Wilcoxon rank sum test) were used instead. Post hoc tests were carried out using the Tukey's honest significant differences test. A multiple-test correction was performed. Along with a p-diet*genotype interaction, the analysis considered the effect of the genotype (independent of dietary group. pgenotype) and the effect of the diet (independent of genotype. p-diet) on the response to intervention. A statistical analysis was performed using R statistical software v.3.5.1 (R Foundation for Statistical Computing, Vienna, Austria). We utilised the brain: blood ratio of enrichment as a pseudo measure of brain DHA uptake [42].

Results
To determine whether the impact of a high fat diet on DHA concentrations in the brain can be modulated by a diet enriched with a combination of fish oil with flavanols and is influenced by APOE genotype, we analysed fatty acids' profiles in the brain and blood pools of male APOE3 and APOE4 mice after a 22-week dietary intervention.

Effect of Diet on Brain, Plasma, and Red Blood Cell DHA Content
First, the impact of FO, FLAV, and FO + FLAV on brain and blood DHA levels was analysed independently of APOE genotype. The brain and plasma DHA concentrations were higher for HF FO (p < 0.001) ( Figure 1A,B). No additional effect of FLAV on brain DHA was observed ( Figure 1A), while FLAV addition led to a higher plasma DHA concentration, p < 0.05 ( Figure 1B). FO intervention reduced the brain: plasma DHA concentration ratio ( Figure 1C), with the degree of enrichment in the plasma not reflected by a comparable increase in brain tissue ( Figure 1A,B). Comparable trends were observed when the brain DHA (%) was compared to RBC ( Figure 1D-F). A high-fat (HF) diet was not associated with changes in the DHA compared to a low-fat (LF) diet in the brain or the blood ( Figure 1A,B,D,E); however, LF was associated with a higher brain: plasma DHA ratio. brain can be modulated by a diet enriched with a combination of fish oil with flavanols and is influenced by APOE genotype, we analysed fatty acids' profiles in the brain and blood pools of male APOE3 and APOE4 mice after a 22-week dietary intervention.

Effect of Diet on Brain, Plasma, and Red Blood Cell DHA Content
First, the impact of FO, FLAV, and FO+FLAV on brain and blood DHA levels was analysed independently of APOE genotype. The brain and plasma DHA concentrations were higher for HF FO (p < 0.001) ( Figure 1A,B). No additional effect of FLAV on brain DHA was observed ( Figure 1A), while FLAV addition led to a higher plasma DHA concentration, p < 0.05 ( Figure 1B). FO intervention reduced the brain: plasma DHA concentration ratio ( Figure 1C), with the degree of enrichment in the plasma not reflected by a comparable increase in brain tissue ( Figure 1A,B). Comparable trends were observed when the brain DHA (%) was compared to RBC ( Figure 1D-F). A high-fat (HF) diet was not associated with changes in the DHA compared to a low-fat (LF) diet in the brain or the blood ( Figure 1A,B,D,E); however, LF was associated with a higher brain: plasma DHA ratio. Figure 1. Effect of diet on brain, plasma, and red blood cells DHA content in mice, expressed in nmol/g of brain tissue (A), mmol/mL of plasma (B), and as % of total fatty acids (D,E). (C,F) are ratios of brain to plasma and brain to RBCs DHA concentrations respectively. Values are expressed as means ± SEM. One-way ANOVA Tukey's post-hoc test adjusted p-values. a, b, c: columns (groups) with different letters are significantly different at p = 0.05, while columns sharing the same letters are not significantly different. Data of each dietary group was obtained from APOE3 and

Effect of APOE Genotype and Diet on Brain, Plasma, and RBC DHA Levels
There was no effect of APOE genotype on the brain DHA status (Figure 2A). The APOE4 mice had a higher DHA percentage in the plasma (p = 0.025 Figure 2B) and RBC (p < 0.001 Figure 2C) than the APOE3 mice, independent of the dietary intervention. A dietgenotype interaction was evident for the RBC DHA (p < 0.001) with a higher percentage enrichment in the APOE4 mice following the FO and FLAV intervention ( Figure 2C), with comparable trends evident for the plasma DHA. We observed a genotype and diet-genotype interaction for the brain: RBC DHA ratio, with the higher ratio in APOE3 versus APOE4 animals (p < 0.001, Figure 2E), largely reflected by FLAV supplementation (p < 0.001, Figure 2E). diet-genotype interaction was evident for the RBC DHA (p < 0.001) with a higher percentage enrichment in the APOE4 mice following the FO and FLAV intervention ( Figure 2C), with comparable trends evident for the plasma DHA. We observed a genotype and dietgenotype interaction for the brain: RBC DHA ratio, with the higher ratio in APOE3 versus APOE4 animals (p < 0.001, Figure 2E), largely reflected by FLAV supplementation (p < 0.001, Figure 2E).

Impact of Diet and Genotype on DHA: AA Is More Evident in APOE4 Mice
Due to its impact on systemic and neuro-inflammatory status, the DHA: AA ratio was calculated in the blood and the brain. A higher RBC DHA: AA ratio was evident in APOE4 compared to APOE3 (p < 0.0001, Table 1). A diet-genotype interaction was observed in the DHA: AA ratio in the blood pools only (plasma and RBC, p = 0.021 and p < 0.000, respectively), with a significantly higher ratio in APOE4 carriers in the HF FO, HF FLAV, and HF FO+FLAV diet groups compared to their corresponding APOE3 dietary group. Due to its impact on systemic and neuro-inflammatory status, the DHA: AA ratio was calculated in the blood and the brain. A higher RBC DHA: AA ratio was evident in APOE4 compared to APOE3 (p < 0.0001, Table 1). A diet-genotype interaction was observed in the DHA: AA ratio in the blood pools only (plasma and RBC, p = 0.021 and p < 0.000, respectively), with a significantly higher ratio in APOE4 carriers in the HF FO, HF FLAV, and HF FO + FLAV diet groups compared to their corresponding APOE3 dietary group.
A lipidomic analysis in the brain of APOE3 and APOE4 mice revealed no overall diet-genotype interaction on lipid classes or fatty acid concentrations. The total lipids DHA and arachidonic acids (AA) values did not differ between the genotypes (Supplemental Table S2). Values are expressed as means ± SEM. a, b, c significantly higher in APOE4 compared to APOE3. Number of mice in each dietary and genotype group are: LF APOE3 n = 11, LF APOE4 n = 9, HF APOE3 n = 13, HF APOE4 n = 8, HF FO APOE3 n = 11, HF FO APOE4 n = 8, HF FLAV APOE3 n = 10, HF FLAV APOE4 n = 9, HF FO + FLAV APOE3 n = 10, and HF FO + FLAV APOE4 n = 8. Bold numbers show significant p-values.

Impact of Diet and APOE Genotype on Brain Phospholipid Subclasses' DHA Content
The DHA concentration in the different phospholipid fractions was not different between the LF and the HF diet. In the APOE3 mice, DHA supplementation (HF FO and HF FO + FLAV) increased the brain DHA in total phospholipids compared to the high-fat diet group (HF), being mostly reflected in the PC fraction (Table 2). Similar results were observed in the APOE4 mice. Interestingly, a 17.1% (p < 0.05) and 20.0% (p < 0.001) higher DHA level in the PC fraction of the HF FO and HF FO + FLAV groups, and a 14.5% (p < 0.05) higher DHA level in the PE fraction of the HF FO + FLAV group was evident in the APOE4 animals relative to the HF controls (Table 2).  The PC or PE fractions of arachidonic acid (AA) were not significantly different between the diet groups in the APOE4 mice (Supplemental Table S3). In the APOE3 mice, only the AA-PE fraction was reduced in the DHA-enriched groups in the APOE3 animals (Supplemental Table S3).

Discussion
The present study provides the first comprehensive investigation of the impact of supplementation with FLAV with or without DHA on the brain lipidomic profiles and according to APOE genotype status, with a complex picture of DHA*FLAV*APOE interactions. Although the addition of FLAV did not significantly increase brain DHA in the group as a whole, FLAV led to an increase in the brain: RBC DHA ratio, which was limited to the APOE3 animals. As expected, the brain DHA levels increased in the DHA-enriched dietary groups; however this was not influenced by the addition of FLAV. Following supplementation, higher blood (RBC and trend for plasma) DHA levels were observed in the APOE4 mice relative to APOE3. This was accompanied by a lower brain: RBC ratio, which together highlights deficits in either DHA transport, storage, use, or turnover associated with the APOE4 carrier status. However, in the APOE4 animals a significant increase in DHA in both the brain PC and PE fractions was evident following DHA supplementation.
Although the size effect was modest, our research does highlight the potential of dietary flavanols as an approach to increase the brain DHA status independent of intake. Such strategies are of wide public health relevance, given concerns over fish and EPA/DHA sustainability [43], and given that the majority of the global population fail to meet dietary oily fish or EPA+DHA recommendations [44,45] and have a suboptimal EPA and DHA status [46]. It is particularly relevant to the estimated 25% of the world population who follow a vegetarian or vegan diet by choice or necessity, with negligible dietary EPA and DHA intake.
The number of people living with dementia worldwide is around 50 million [47]. With expanding and ageing populations, the incidence is predicted to almost triple by 2050. APOE genotype and obesity have been independently and interactively linked to AD risk, in humans and rodents [48]. In the present study we compared fatty acid and lipidomic profiles in the wild-type APOE3 and with at-risk APOE4 transgenic mice [2]. Animals were exposed to a high-fat diet to mimic human Western dietary practices, and in order to induce a human-like overweight phenotype with the associated insulin resistance and accelerated cognitive decline [48].
Observational studies have shown an association between DHA intake and reduced AD risk [49,50]. However, RCTs have shown inconsistent results, likely in part explained by the APOE genotype and AD stage. There is now relatively consistent evidence that the cognitive benefits associated with DHA supplementation are reduced in APOE4 carriers [18,19,51]. Mechanistically, impaired BBB-mediated uptake and increased DHA oxidation and turnover are purported to be responsible. While there was an increase in the brain DHA level following fish oil supplementation in APOE3 only, no difference between genotypes was evident for habitual DHA in the control (HF) group. We recently demonstrated a reduced habitual brain DHA level in 18-month-old female APOE4 mice relative to younger females or age-matched APOE3 males [21]. In addition, rodent studies performed on males and females have successfully demonstrated a genotype difference in response to DHA [42,52]. In the present study only male mice were used, which might explain some of the discrepancy. The cognitive deficits associated with APOE4 are emerging as being more evident in females, potentially due to the additive effect of menopause and APOE4carrier status on neurocognitive processes, with females also shown to benefit more from fish intake and DHA intake in old age [7,50]. Future research on DHA-APOE genotypeneurocognitive associations should consider sex as a potentially important mediating factor.
The capacity for DHA production in the brain is limited, with DHA predominantly derived from the systemic circulation, through dietary and systemic tissue pools. It has been shown that the plasma DHA metabolism is impaired in APOE4 carriers [53]. We observed higher plasma and RBC DHA levels in the APOE4 mice, in agreement with previous findings [42]. These genotype-mediated differences were reflected in the brain: RBC DHA values, with a higher ratio in APOE3. This may suggest a lower tissue uptake of DHA in APOE4, although a higher brain turnover cannot be precluded [17]. Furthermore, it indicates that supplementation with 1.5g DHA (HED) was not sufficient to raise DHA in the brain in the APOE4 genotype. A higher dose of DHA (up to 3 g/d) may be needed in APOE4 carriers, as has been suggested [52].
The combination of fish oil/DHA with other dietary compounds, such as flavonoids, is of particular interest, as it could help mitigate the negative impact of an APOE4 genotype and potentially increase DHA bioavailability. In a 2010 analysis, green tea flavonoids (catechins) and fish oil had an additive effect on the inhibition of cerebral Aβ deposits in a mouse model of AD [54]. This combination of DHA and catechin also had an effect on cognitive performance (maze behaviour) in old mice, with the addition of catechin to the diet increasing brain DHA, possibly through the antioxidant properties of catechin [55]. In the present study the addition of cocoa FLAV did not significantly increase brain DHA levels. The lack of effect of catechin/epicatechin (FLAV) supplementation in our current study relative to the observations of Shirai and Suzuki [55] could be partly due to our use of a high-fat regime background diet (45% versus 6.5%). Interestingly, we observed that relative to LF feeding, the HF regime reduced the DHA concentration (in nmol/g) in the brain, as reflected in the lower brain: plasma DHA ratio, which could potentially buffer any physiological impact of FLAV on brain DHA levels. Furthermore, the brain region may have an impact on the size effect, with our analysis conducted in the subcortical region versus the whole brain in the previous analysis [55]. Somewhat consistent with a previous finding [55], we did observe a higher brain: RBC (%) ratio of DHA in the APOE3, but not the APOE4 animals ( Figure 2D), attributable to lower RBC DHA and a trend towards higher brain DHA (%). The aetiology of this finding is unknown, but is suggestive of an impact of FLAV on DHA biosynthesis, or retention/metabolism within the brain in the common APOE3 genotype. This is worthy of further investigation, as it represents a potential means of increasing brain DHA without the need for increased intake.
The balance between DHA and AA is tightly regulated in the phospholipids of neuronal membranes and is crucial to ensure membrane fluidity, plasticity, and neurotransmission [52]. The DHA: AA ratio is also used in the diagnosis of MCI/AD pathology [56]. We recently demonstrated that old age and carrying an APOE4 genotype decreased the brain DHA: AA ratio [21]. Interestingly, we did not observe any significant genotype effect in the brain DHA: AA ratio in the present study, which is likely attributable to the sex of the animals, with the effect more evident in females [4,7].
Less than 2% of fatty acids are present in the brain as free fatty acids. The majority are present as membrane phospholipids: PC, PE, PS, and PI. PS and PE are quantitatively the major brain DHA pools [39]. As ApoE is involved in brain phospholipid transport and metabolism, carrying an APOE4 genotype may impair the structure of the neuronal membrane affecting DHA transport and downstream signalling pathways [57]. We observed that the higher total brain DHA in the DHA-enriched diet group in APOE3 mice was reflected in the PC fraction. In APOE4, DHA supplementation increased DHA in both the PC and PE fraction, with the size effect for LPC not reaching significance. The addition of FLAV to the HF diet (with or without DHA) did not result in phospholipid-fraction enrichment. Although FO did not increase the percentage of brain DHA in APOE4, a 17.1% (p < 0.05) and 20.0% (p < 0.001) higher DHA level in the PC fraction of the HF FO and HF FO + FLAV groups, and a 14.5% (p < 0.05) higher DHA level in the PE fraction of the HF FO + FLAV group was evident in these animals relative to the HF controls. Flavonoids have been reported to increase the level of different phospholipids. For example, quercetin and naringenin increased PC and to a lesser extent PE in LPS-induced macrophages, which showed higher levels of longer chain and more polyunsaturated fatty acids (36-40 carbons) in PCs while no effect was observed in the PI and PS fractions. [58].
A limitation was that our analysis did not include the PS fraction, which is known to be a major anionic phospholipid class in neuronal membranes and particularly sensitive to DHA deprivation [59]. However, PE, which is a precursor of PS, was captured.

Conclusions
The current analysis shows an APOE-dependent change in brain and blood DHA levels, in response to fish oil and cocoa flavanols interventions. The APOE4 genotype was associated with lower brain-DHA enrichment despite having higher blood DHA, compared to APOE3. An investigation into human bio-banked samples from human males and females is needed to confirm these findings and to help establish if APOE4s should be targeted with recommendations to optimise the DHA brain status. There was some evidence of a positive impact of flavanols on the brain-DHA status in APOE3 only, which merits further investigation to confirm the findings and establish underpinning mechanisms.
Supplementary Materials: The following supporting information can be downloaded at: https: //www.mdpi.com/article/10.3390/nu15092032/s1, Table S1: Fatty acid content in feeds; Table S2: Impact of diet and APOE genotype on brain neutral lipid AA and DHA content; Table S3: Diet effect on arachidonic acid phospholipid fractions in APOE3 and APOE4-TR mice after 22 weeks of treatment.

Data Availability Statement:
The data presented in this study are available on request from the corresponding author.