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Algorithms, Volume 15, Issue 10

October 2022 - 56 articles

Cover Story: We propose single-cell topological simplicial analysis (scTSA), a topological data analysis framework to analyze high-throughput time series data. Applying this approach to single-cell gene expression profiles from local networks of cells in different developmental stages reveals a previously unseen topology of cellular ecology. These networks contain an abundance of cliques of single-cell profiles bound into cavities that guide the emergence of more complicated habitation forms. We visualize these ecological patterns with their topological simplicial architectures and highlight critical developmental stages. As a nonlinear, model-independent, and unsupervised framework, scTSA can be applied to tracing multi-scale cell lineage, identifying critical stages, or creating pseudo-time series. View this paper
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Articles (56)

  • Article
  • Open Access
8 Citations
2,991 Views
20 Pages

21 October 2022

The point clouds registration is a key step in data processing for the 3D laser scanner to obtain complete information of the object surface, and there are many algorithms. In order to overcome the disadvantages of slow calculation speed and low accu...

  • Article
  • Open Access
4 Citations
2,425 Views
11 Pages

21 October 2022

We develop a numerical method for solving three-dimensional problems of fluid filtration and absorption in a piecewise homogeneous medium by means of boundary integral equations. This method is applied to a simulation of the lymph flow in a lymph nod...

  • Article
  • Open Access
11 Citations
2,420 Views
13 Pages

Dynamics and Stability on a Family of Optimal Fourth-Order Iterative Methods

  • Alicia Cordero,
  • Miguel A. Leonardo Sepúlveda and
  • Juan R. Torregrosa

21 October 2022

In this manuscript, we propose a parametric family of iterative methods of fourth-order convergence, and the stability of the class is studied through the use of tools of complex dynamics. We obtain the fixed and critical points of the rational opera...

  • Article
  • Open Access
5 Citations
3,003 Views
14 Pages

Biomedical Image Classification via Dynamically Early Stopped Artificial Neural Network

  • Giorgia Franchini,
  • Micaela Verucchi,
  • Ambra Catozzi,
  • Federica Porta and
  • Marco Prato

20 October 2022

It is well known that biomedical imaging analysis plays a crucial role in the healthcare sector and produces a huge quantity of data. These data can be exploited to study diseases and their evolution in a deeper way or to predict their onsets. In par...

  • Article
  • Open Access
33 Citations
8,910 Views
38 Pages

Anomaly Detection in Financial Time Series by Principal Component Analysis and Neural Networks

  • Stéphane Crépey,
  • Noureddine Lehdili,
  • Nisrine Madhar and
  • Maud Thomas

19 October 2022

A major concern when dealing with financial time series involving a wide variety of market risk factors is the presence of anomalies. These induce a miscalibration of the models used to quantify and manage risk, resulting in potential erroneous risk...

  • Article
  • Open Access
6 Citations
3,727 Views
24 Pages

Model and Training Method of the Resilient Image Classifier Considering Faults, Concept Drift, and Adversarial Attacks

  • Viacheslav Moskalenko,
  • Vyacheslav Kharchenko,
  • Alona Moskalenko and
  • Sergey Petrov

19 October 2022

Modern trainable image recognition models are vulnerable to different types of perturbations; hence, the development of resilient intelligent algorithms for safety-critical applications remains a relevant concern to reduce the impact of perturbation...

  • Article
  • Open Access
12 Citations
3,200 Views
16 Pages

Distributed Fuzzy Cognitive Maps for Feature Selection in Big Data Classification

  • K. Haritha,
  • M. V. Judy,
  • Konstantinos Papageorgiou,
  • Vassilis C. Georgiannis and
  • Elpiniki Papageorgiou

19 October 2022

The features of a dataset play an important role in the construction of a machine learning model. Because big datasets often have a large number of features, they may contain features that are less relevant to the machine learning task, which makes t...

  • Article
  • Open Access
6 Citations
3,129 Views
25 Pages

Modeling Different Deployment Variants of a Composite Application in a Single Declarative Deployment Model

  • Miles Stötzner,
  • Steffen Becker,
  • Uwe Breitenbücher,
  • Kálmán Képes and
  • Frank Leymann

19 October 2022

For automating the deployment of composite applications, typically, declarative deployment models are used. Depending on the context, the deployment of an application has to fulfill different requirements, such as costs and elasticity. As a consequen...

  • Article
  • Open Access
7 Citations
2,716 Views
17 Pages

Weibull-Open-World (WOW) Multi-Type Novelty Detection in CartPole3D

  • Terrance E. Boult,
  • Nicolas M. Windesheim,
  • Steven Zhou,
  • Christopher Pereyda and
  • Lawrence B. Holder

18 October 2022

Algorithms for automated novelty detection and management are of growing interest but must address the inherent uncertainty from variations in non-novel environments while detecting the changes from the novelty. This paper expands on a recent unified...

  • Article
  • Open Access
3 Citations
2,522 Views
28 Pages

17 October 2022

Fuzzy c-means (FCM), the fuzzy variant of the popular k-means, has been used for data clustering when cluster boundaries are not well defined. The choice of initial cluster prototypes (or the initialization of cluster memberships), and the fact that...

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Algorithms - ISSN 1999-4893