Nitric Acid Pretreatment of Jerusalem Artichoke Stalks for Enzymatic Saccharification and Bioethanol Production

This paper evaluated the effectiveness of nitric acid pretreatment on the hydrolysis and subsequent fermentation of Jerusalem artichoke stalks (JAS). Jerusalem artichoke is considered a potential candidate for producing bioethanol due to its low soil and climate requirements, and high biomass yield. However, its stalks have a complexed lignocellulosic structure, so appropriate pretreatment is necessary prior to enzymatic hydrolysis, to enhance the amount of sugar that can be obtained. Nitric acid is a promising catalyst for the pretreatment of lignocellulosic biomass due to the high efficiency with which it removes hemicelluloses. Nitric acid was found to be the most effective catalyst of JAS biomass. A higher concentration of glucose and ethanol was achieved after hydrolysis and fermentation of 5% (w/v) HNO3-pretreated JAS, leading to 38.5 g/L of glucose after saccharification, which corresponds to 89% of theoretical enzymatic hydrolysis yield, and 9.5 g/L of ethanol. However, after fermentation there was still a significant amount of glucose in the medium. In comparison to more commonly used acids (H2SO4 and HCl) and alkalis (NaOH and KOH), glucose yield (% of theoretical yield) was approximately 47–74% higher with HNO3. The fermentation of 5% nitric-acid pretreated hydrolysates with the absence of solid residues, led to an increase in ethanol yield by almost 30%, reaching 77–82% of theoretical yield.


Introduction
According to forecasts by the International Energy Agency (IEA), as the population increases (1.3-fold) between 2009 and 2050, energy consumption will grow even more quickly (2-fold), reaching 15-18 billion tons of oil equivalent (TOE) in 2035 [1,2].Thus far, world energy demand has been met mainly by burning fossil fuels.However, due to the depletion of coal, oil, and natural gas reserves, as well as increasing public awareness of the environmental impact of emissions, more attention is being focused on developing renewable energy sources, such as biofuels [3].First-generation biofuels are mostly produced from starch-and sugar-based biomass, derived from food crops grown on agricultural land using standard processes.This can affect food supply and prices.Interest has therefore been growing in second generation biofuels, produced using different feedstocks.
Second generation bioethanol production requires energy crops with high biomass yields per unit land area, resistance to changing climatic conditions, diseases and pests, and the ability to grow in poor soil conditions.Jerusalem artichoke (JA) corresponds to all these requirements [4,5].An herbaceous Energies 2018, 11, 2153 2 of 17 perennial plant belonging to the Asteraceae (also called Compositae) family, JA consists mainly of small underground tubers with 1-3 m tall stalks.Originally used in food and feed, JA tubers contain 75-79% water, 15-16% carbohydrates (in the form of inulin), and 2-3% protein [6,7].In the past few decades, JA has been cultivated extensively for fructose, oligofructose, and inulin extraction (as functional food ingredients, and more recently to produce bioethanol from the tuber inulin [8][9][10][11].It is also possible to obtain other valuable biochemicals from lignocellulosic biomass, including biobutanol [12] and dimethylfuran [13].Jerusalem artichoke tubers are considered an attractive feedstock, for producing these chemicals [14,15]. Much less attention has been given to the opportunities for producing bioethanol from JA stalks (JAS).Like all lignocellulosic material, JAS consist mainly of cellulose, hemicellulose, and lignin, bound together in a complex matrix which makes the raw material resistant to enzymatic hydrolysis [16,17].Appropriate pretreatment must therefore be applied, to break down this recalcitrant structure and make the cellulose more accessible to hydrolyzing enzymes [16].Many pretreatment methods exist, including physical, chemical, physicochemical, biological, and combined methods.However, the best method for pretreating JAS has not yet been found.Only a few papers describe bioethanol production from JAS. Kim et al. [18] and Kim and Kim [19] suggest using whole JA plants for bioethanol production.Using SSF and CBP processes, respectively, these authors treated the tubers as a source of nitrogen for Kluyveromyces marxianus yeasts.Khatun et al. [20] used inulinase producing Saccharomyces cerevisiae yeasts, for the fermentation of JAS pretreated with NaOH.Song et al. [21] investigated the effect of hydrogen peroxide-acetic acid (HPAC) pretreatment.All these studies have had a significant impact on research into bioethanol production from JAS.However, many issues regarding the pretreatment of JAS remain unresolved.
Dilute acid pretreatment is the most commonly used method for preparing lignocellulosic biomass and has great potential for industrial applications.This method is recommended by the National Renewable Energy Laboratory (NREL), as it enables the removal and recovery of most of the hemicelluloses, in the form of dissolved sugars, so higher yields of glucose can be achieved [22].The removal of hemicelluloses facilitates access to the cellulose.However, this method does not result in significant delignification [23,24].Dilute sulfuric acid, has been widely used to pretreat various types of lignocellulosic biomass [25][26][27].Much less attention has been given to hydrochloric, and especially nitric acid.In comparison to sulfuric acid, nitric acid causes less equipment corrosion, and has been found to be much faster and effective for hydrolysis of lignocellulosic biomass [28][29][30].Unlike acid pretreatment, alkaline pretreatment removes lignin, as well as acetyl and uronic acid groups present in hemicelluloses.It thus leads to the solubilization of lignocellulosic complexes.The main advantage of alkaline methods is that the reaction is performed under normal pressure and temperature, so less energy input is required [31].Alkaline treatment has been applied with success to various lignocellulosic feedstocks, including switchgrass [32] and sweet sorghum bagasse [33], enabling a high rate of cellulose digestibility.
Given the advantages of JA as a feedstock for biofuel production, and the limited research regarding the use of JAS in second-generation processes, this paper assessed the impact of various pretreatments on this type of biomass.Each kind of lignocellulosic biomass requires the selection of the most appropriate pretreatment method.This study investigated the effect of different alkaline (sodium and potassium hydroxide) and acidic (sulfuric, hydrochloric and nitric acid) pretreatments, on the yields of subsequent enzymatic hydrolysis and fermentation.Based on our previous research [34], as well as on literature review [35,36], the effect of the acids and alkalis was evaluated under uniform conditions, i.e., 121 • C for 60 min; as these conditions were found to be sufficient to release the structure of the lignocellulosic complex, and thus enhance enzymatic hydrolysis.It was assumed that the use a of a less severe method of pretreatment would also result in the production of fewer inhibitors.To the best knowledge of the authors, this was the first study to evaluate the effect on JAS biomass, of pretreatment with hydrochloric and nitric acids or potassium hydroxide.
To increase the susceptibility of lignocellulosic biomass to enzymatic hydrolysis, appropriate pretreatment methods must be applied.In our study, the effect of different concentrations of acids (2% and 5% w/v HCl, H 2 SO 4 , HNO 3 ) and alkalis (2% and 5% w/v NaOH, KOH) on JAS was evaluated by analyzing the solid and liquid fractions obtained after each pretreatment.The solid residues were analyzed after washing for cellulose, hemicellulose, and lignin content.The dry weight loss was also measured, to calculate the percentage of recovered solids.In the liquid fraction, the concentrations of inhibitory compounds (formic acid, acetic acid, 5-hydroxymethylfurfural-HMF, furfural, and total phenolics) and of sugars released during pretreatment (cellobiose, glucose, xylose, and arabinose) were measured using the HPLC method.The rate of hemicellulose and cellulose hydrolysis was calculated, based on the concentrations of xylose and glucose in the hydrolysates and the initial hemicellulose and cellulose contents in the raw JAS.The results are presented in Tables 1-3.Analysis of the solid fractions revealed that when acid pretreatment was applied, the hemicellulose content in the biomass decreased significantly, from 12.69% d.m. to 1.31% d.m. (nitric acid pretreatment), while the cellulose and lignin content increased.This could be explained by the fact that the main reaction which occurred during pretreatment in acidic environments was the decomposition of hemicelluloses, especially the xylan fraction.As a result, higher recovery of hemicellulosic sugars is possible, and the cellulose present in the solid fraction is more susceptible to enzymatic hydrolysis [44,45].The highest cellulose content in the biomass (77.27% d.m.) was achieved when 5% nitric acid was applied (Table 1).Under the same conditions, 96% of the hemicelluloses were hydrolyzed (Table 2).However, biomass recovery was significantly lower (p < 0.05) (66% for 2% w/v HNO 3 and 57% for 5% w/v HNO 3 ) than when other pretreatment methods were used.Rodríguez-Chong et al. [28] reported that nitric acid exhibits much higher efficiency for hemicellulose removal, and the whole process is faster than when hydrochloric or sulfuric acids are used.Under optimal conditions (i.e., 6% HNO 3 , 122 • C, 9.3 min), after pretreatment these authors obtained a liquor containing 18.6 g xylose/L, 2.87 g glucose/L, 2.04 g arabinose/L, 0.9 g acetic acid/L, and 1.32 g furfural/L.Zhang et al. [29] evaluated the effect of low concentrations of nitric acid on the hydrolysis of hemicelluloses.The optimum conditions were reported as 0.6% HNO 3 , 150 • C for 1 min, releasing 22.01 g xylose/L, 1.91 g glucose/L, 2.90 g arabinose/L, 2.42 g acetic acid/L, and 0.21 g furfural/L.However, these authors did not perform enzymatic hydrolysis of the solids obtained, so the effects on cellulose saccharification are still unclear.
The recovery of solids after pretreatment with HCl or H 2 SO 4, NaOH or KOH at 2% concentration, was approximately 72-74%.Increasing the acid or alkali concentration to 5% resulted in solids recovery in the range of 59-66%.In the liquid fraction obtained after acid pretreatment, glucose was present at a similar level (2.2-2.8 g/L), regardless of the type of acid used, except for 5% w/v nitric acid, with which 5.70 g/L of glucose was obtained (corresponding to 14.66% of cellulose hydrolysis) (Table 2).After acid pretreatment, large amounts of furan derivatives were found in the liquid fraction, reaching 0.74 g/L for HMF and 0.52 g/L for furfural (Table 3).Herrera et al. [46] obtained 2.5 g/L and 1.0 g/L of acetic acid and furfural, respectively, in hydrolysate from 2% w/v HCl-pretreated sorghum straw at 100 • C. When alkaline treatment is applied, the main reactions are saponification and solvation, causing lignin to be removed from the lignocellulosic matrix.Unlike acid treatment, the deployment of alkaline reagents leads to lower hemicellulose hydrolysis and lower production of inhibitory compounds [45].In our study, the application of NaOH or KOH resulted in the removal of 66-76% of the lignin, whilst the cellulose and hemicellulose contents were approximately 56-63% d.m. and 8-10% d.m., respectively (Table 1).
The concentration of glucose in the liquid fraction was at a similar level to that with acid pretreatment (p > 0.05).However, the concentrations of xylose and furan derivatives were significantly lower, by up to 0.31 g/L and 0.98-16.43mg/L, respectively (Tables 2 and 3).Nevertheless, the concentration of aliphatic carboxylic acids was higher than in the acid-treated samples (p < 0.05), due to the removal of acetic and other uronic acids, which were substituted for hemicelluloses because of alkaline treatment [47].The concentration of phenolic compounds was also significantly higher (p < 0.05) in alkaline-treated samples than in acid-treated ones, and ranged from 1.12 to 1.39 g/L.The application of acidic pretreatment led to the release of 0.46 to 1.08 g/L of TPC.Moreover, there were significant differences (p < 0.05) in obtained level of TPC depending on acid used, with the lowest concentration of phenols obtained for nitric acid pretreatment, and the highest for sulfuric acid pretreatment.However, as reported by Kim et al [48], phenolic compounds are released from biomass during enzymatic hydrolysis, regardless of whether the pretreatment step was applied or not.Phenolic compounds are strong inhibitors, which are proven to inhibit enzymes used in the saccharification step, as well as being responsible for their deactivation.Ximenes et al. [49,50], have shown that phenolic compounds are important inhibitors and deactivators of cellulolytic enzymes, especially β-glucosidase, with the strongest negative effect exhibited by a polymeric compound-tannin acid.Authors imply that the removal of inhibitors, in particular, phenolic compounds, prior to the saccharification process, ought to be performed to ensure high enzyme activity and to achieve better hydrolysis yield.
Taking into consideration the results obtained in our study, the pretreatment using nitric acid, resulted in significantly lower (p < 0.05) concentrations of inhibitors in liquid fractions.Therefore, acid treatment using nitric acid is a promising pretreatment method for JAS biomass, enabling a large cellulose fraction to be obtained from the solid material.

Effect of Pretreatment on Enzymatic Hydrolysis
To evaluate the susceptibility of acid and alkali pretreated JAS to enzymatic hydrolysis, the biomass obtained after each pretreatment was subjected to saccharification at 50 • C for 72 h.During that time, samples were collected every 24 h and the concentrations of glucose and other saccharides (cellobiose, xylose, and arabinose) were assessed.The results are presented in Figure 1 and Table 4.The hydrolysis of untreated JAS resulted in the formation of a small amount of glucose (approximately 2.5 g/L).This concentration was achieved after 24 h of hydrolysis and remained at an almost constant level until the end of the process.The best results from among the acid pretreatment methods, were obtained when nitric acid was used.Not only did it provide the highest glucose yield after hydrolysis (89% of the theoretical yield) (Table 4), but more than 92% of this glucose was formed within the first 48 h of hydrolysis (Figure 1).A similar situation was observed in the case of 5% (w/v) HCl.However, the total amount of glucose and the glucose yield were significantly lower (p < 0.05) (17 g/L and 55.5%, respectively).The application of 2% (w/v) HCl, or H 2 SO 4 (at both concentrations-2% and 5% (w/v)), required more than 48 h of hydrolysis (Figure 1).The application of sulfuric acid resulted in the formation of 12.5 and 13.5 g/L of glucose, respectively, when 2% and 5% (w/v) of reagent was used.Increasing the acid concentration did not lead to a significant increase in released glucose (p > 0.05).However, taking into consideration the cellulose content in pretreated biomass, the yield of cellulose hydrolysis was significantly (p < 0.05) higher when 5% (w/v) H 2 SO 4 was applied (58% of the theoretical yield), as compared with 2% (w/v) H 2 SO 4 (42% of the theoretical yield) (Table 4).
An inverse relation was observed with regard to xylose formation.When 2% (w/v) sulfuric acid was used, the concentration of released xylose was 1.90 g/L, in comparison to 1.28 g/L for 5% (w/v) acid, which was probably caused by greater hemicellulose decomposition during pretreatment with higher acid concentrations (Table 4).The application of hydrochloric acid showed a similar pattern to H 2 SO 4 for glucose formation, i.e., increasing the concentration of HCl did not cause a significant increase.When 2% (w/v) nitric acid was used, the concentration of glucose was significantly higher than for other acidic reagents (p < 0.05) and reached 17.87 g/L (54% yield), after 72 h of enzymatic hydrolysis.However, the use of a higher concentration of HNO 3 (i.e., 5% w/v) resulted in a more than two-fold increase in the amount of released glucose, up to 38.47 g/L with 89% cellulose hydrolysis efficiency.Acid treatment converted most hemicelluloses into monomeric sugars, leading to a higher rate of cellulose bioconversion.Martin et al. [51] achieved almost 60% cellulose conversion after enzymatic hydrolysis of Jatropha curcas shells, pretreated with 1.5% sulfuric acid at 110 • C for 60 min.
two-fold increase in the amount of released glucose, up to 38.47 g/L with 89% cellulose hydrolysis efficiency.Acid treatment converted most hemicelluloses into monomeric sugars, leading to a higher rate of cellulose bioconversion.Martin et al. [51] achieved almost 60% cellulose conversion after enzymatic hydrolysis of Jatropha curcas shells, pretreated with 1.5% sulfuric acid at 110 °C for 60 min.Alkali treatment leads to the degradation of side ester and glycoside chains, as well as to cellulose swelling and decrystalization [52,53].This enables better access by cellulolytic enzymes.In the present study, two alkaline reagents, sodium and potassium hydroxide, were used.The results showed that the application of NaOH resulted in higher glucose concentrations (18.85 g/L and 23.63 g/L, respectively, for 2% and 5% (w/v) NaOH), when compared with KOH (16.33 g/L and 20.67 g/L) (Table 4).However, after pretreatment using potassium hydroxide, the maximum level of glucose was obtained in a shorter time.The amount of cellulose converted to glucose was also significantly higher (p < 0.05) after NaOH treatment, than after pretreatment with KOH.Moreover, a significant Alkali treatment leads to the degradation of side ester and glycoside chains, as well as to cellulose swelling and decrystalization [52,53].This enables better access by cellulolytic enzymes.In the present study, two alkaline reagents, sodium and potassium hydroxide, were used.The results showed that the application of NaOH resulted in higher glucose concentrations (18.85 g/L and 23.63 g/L, respectively, for 2% and 5% (w/v) NaOH), when compared with KOH (16.33 g/L and 20.67 g/L) (Table 4).However, after pretreatment using potassium hydroxide, the maximum level of glucose was obtained in a shorter time.The amount of cellulose converted to glucose was also significantly higher (p < 0.05) after NaOH treatment, than after pretreatment with KOH.Moreover, a significant amount of xylose, ranging from 4.99 g/L to 8.47 g/L, was released via enzymatic saccharification of JAS after alkali pretreatment.NaOH was found to be an effective method, for the pretreatment of Coastal Bermuda grass, at 121

Concentration of Inhibitors and Fermentation of Hydrolysates
The next step in the process of obtaining bioethanol, after enzymatic hydrolysis of cellulose, is microbial fermentation of the released glucose to ethanol, conducted mainly by Saccharomyces cerevisiae (S. cerevisiae) yeasts.Unfortunately, these microbes are very sensitive to the presence in the hydrolysates, of products from the degradation of lignocellulose.These products include a wide range of substances formed either from the decomposition of sugars, i.e., furan derivatives and aliphatic carboxylic acids, or from lignin, i.e., phenolic compounds [45].The furan derivatives (furfural and HMF), are formed by the dehydration of pentose and hexose sugars, respectively, and are responsible for reducing yeast growth, as well as ethanol yield and productivity.Acetic acid is formed because of the hydrolysis of the acetyl groups in hemicellulose, whilst formic acid is a product of the degradation of furan aldehydes [45,55].A variety of phenolic compounds are formed from lignin, when pretreatment is applied.They can affect the growth of microorganisms, as well as fermentation efficiency, and their toxicity is most probably related with specific functional groups [55].
After pretreatment, the biomass was washed thoroughly with water to remove inhibiting compounds.However, there was a risk that small amounts of inhibiting compounds could remain bound to solid fractions and affect downstream processes.To determine the concentration of inhibitors in the hydrolysates, HPLC analysis was performed.The results are summarized in Table 5.In the raw JAS hydrolysates, only acetic acid was present, at a concentration of 1.11 mg/L.No formic acid, furan derivatives, or phenolic compounds were detected.The concentration of aliphatic carboxylic acids in hydrolysates obtained from pretreated biomass was in the range of 2.57-22.23 mg/L and 8.31-37.44mg/L, respectively, for formic and acetic acids.The only exceptions were the hydrolysates obtained from HNO 3 -pretreated biomass, in which the concentration of acetic acid was significantly higher (p < 0.05) than in hydrolysates of JAS treated with other chemicals, reaching 128.58 mg/L (2 mM).However, this concentration is still not considered to be toxic to S. cerevisiae.In fact, according to Larsson et al. [56], below 100 mM acetic acid can have a stimulatory effect on ethanol fermentation.Furan compounds, are the other large group of inhibitory compounds present in lignocellulosic hydrolysates.It has been reported that, as with carboxylic aliphatic acids, moderate amounts of furan aldehydes in fermented media can enhance the fermentation efficiency of recombinant xylose-utilizing S. cerevisiae [55].In our study, the concentrations of HMF and furfural in hydrolysates, were in the ranges of 1.68-12.29 mg/L and 2.83-7.78mg/L, respectively.The concentration of phenolic compounds ranged from 80.63 to 196.91 g/L, respectively, when 5% w/v and 2% w/v HNO 3 were applied.In hydrolysates obtained with the use of other reagents, the TPC value was between 128 and 178 mg/L.Despite the significant differences between the samples prepared using different pretreatment methods, no direct correlation was observed between the concentrations of furan or phenolic compounds, and the initial pretreatment methods used.This implied that washing the solids before enzymatic hydrolysis, had successfully removed all analyzed inhibitors which had formed during the pretreatment step.
To evaluate the susceptibility of the hydrolysates to be converted into bioethanol, fermentations were performed using commercial distiller's yeast at a dose of 0.5 g/L of hydrolysate, supplemented with ammonium phosphate (0.3 g/L) as a nutrient.The results are presented in Figures 2 and 3.The application of dilute sulfuric acid, resulted in the formation at most of 5 g/L of ethanol (Figure 2).It was also observed that when a higher concentration of acid was used, the yield of ethanol decreased, from 80% to 51% respectively, for 2% and 5% (w/v) H 2 SO 4 (Figure 3).This was despite the fact that the initial level of sugars in the hydrolysates was at a similar level.Moreover, not all the available glucose was converted by the yeast, following pretreatment with 5% (w/v) H 2 SO 4 .Pretreatment with HCl or KOH (at concentrations of both 2% and 5%), as well as 2% NaOH, resulted in similar ethanol concentrations (p > 0.05), ranging from 6.2 g/L to 7.2 g/L, with corresponding ethanol yields in the rage of 68-78% of the theoretical yield.The utilization of glucose during fermentation in these samples was almost complete.Pretreatment with nitric acid had a significantly different impact on the fermentation process, compared with the other tested chemicals.The application of 5% (w/v) HNO 3 , led to the formation of 38.5 g/L of glucose during saccharification.However, only 9.5 g/L of ethanol was obtained after fermentation, which was only 46% of the theoretical yield.Moreover, the amount of glucose that remained in the medium after fermentation was significant (11.5 g/L), which may imply that there were still some unidentified inhibitors present in hydrolysate.
As shown in Table 5, the concentrations of acetic and formic acids, as well as of furfural and HMF, were not at levels considered toxic to yeasts.The concentration of phenolic compounds was also relatively low.However, the low yield of ethanol may have been caused by the presence of inhibitory compounds, which were released from the pretreated biomass when the ethanol was produced, or due to synergic interactions between inhibitors.In addition, the exact composition of phenolic compounds in tested hydrolysates is unknown.Despite the low TPC level, the concentration of individual phenols can be close to inhibitory to the yeast fermentation process.Nitric acid is a strong oxidizing agent, and for that reason, some compounds that are products of the oxidative reactions of commonly found inhibitors may have been present in the medium [57].Luo et al. [58] found 2-furancarboxylic acid, 2-furanacetic acid, and 5-hydroxymethylfurancarboxylic acid, of which furfural and HMF are precursors, in nitric-acid hydrolysate of aspen chips.Several phenolic compounds are also formed during the degradation of lignin, and some of these could have remained bound to the biomass.Phenolic compounds are much stronger inhibitors of S. cerevisiae than aliphatic acids or furans, so even at low concentrations, they can decrease the ethanol yield significantly. Modelska et al. [59] found the minimal inhibitory concentration (MIC) of vanillin to be 0.25% (2.5 g/L).Adeboye et al. [60] reported that the most toxic inhibitor of S. cerevisiae Ethanol Red, was 4-hydroxy-3-methoxycinnaldehydyde (coniferyl aldehyde), for which the toxicity limit was as low as 1.8 mM (0.32 g/L).The results presented in this paper, are in line with those of other authors working with dilute nitric acid pretreatment.Following the fermentation of wheat straw pretreated with 1% nitric acid at 130 • C, Tutt et al. [61] obtained an ethanol yield of 95 g/kg of biomass, which corresponded to 59.2% fermentation efficiency.
Energies 2018, 11 10 of 17 reactions of commonly found inhibitors may have been present in the medium [57].Luo et al. [58] found 2-furancarboxylic acid, 2-furanacetic acid, and 5-hydroxymethylfurancarboxylic acid, of which furfural and HMF are precursors, in nitric-acid hydrolysate of aspen chips.Several phenolic compounds are also formed during the degradation of lignin, and some of these could have remained bound to the biomass.Phenolic compounds are much stronger inhibitors of S. cerevisiae than aliphatic acids or furans, so even at low concentrations, they can decrease the ethanol yield significantly. Modelska et al. [59] found the minimal inhibitory concentration (MIC) of vanillin to be 0.25% (2.5 g/L).Adeboye et al. [60] reported that the most toxic inhibitor of S. cerevisiae Ethanol Red, was 4-hydroxy-3-methoxycinnaldehydyde (coniferyl aldehyde), for which the toxicity limit was as low as 1.8 mM (0.32 g/L).The results presented in this paper, are in line with those of other authors working with dilute nitric acid pretreatment.Following the fermentation of wheat straw pretreated with 1% nitric acid at 130 °C, Tutt et al. [61] obtained an ethanol yield of 95 g/kg of biomass, which corresponded to 59.2% fermentation efficiency.To increase the ethanol yield in nitric acid pretreated JAS hydrolysates, additional fermentation trials were performed.The impact of a yeast strain (Thermosacc Dry, Ethanol Red), and applied yeast inoculum (0.5 and 1.5 g/L) were assessed.In addition, since all previous experiments were performed with the presence of solid residues during the fermentation process, the effect of separation of unhydrolyzed biomass before fermentation was also evaluated.The results are presented in Figure 4.
Thermosacc Dry and Ethanol Red, both at a dose of 0.5 and 1.5 g/L, resulted in similar (p > 0.05) ethanol yield ranging from 49.22% to 53.85% of the theoretical yield.According to Azhar et al. [62], the concentration of inoculum has an impact on sugars consumption rate and ethanol productivity, but not on the final ethanol yield.The separation of unhydrolyzed solids before fermentation, resulted in a significant (p < 0.05) increase in fermentation efficiency, reaching 77.61-81.51% of the theoretical yield.However, the obtained yield was not influenced by yeast strain or inoculum size under applied conditions.Usually, the fermentation of lignocellulosic hydrolysates is carried out in the presence of solids, which contain mostly lignin [63].Nonetheless, as reported by Monot et al. [64], it is a good practice to remove the solid parts before fermentation, unless hydrolysis and fermentation processes occur simultaneously.As shown in this paper, it is very important when fermentation of nitric acid pretreated biomass is carried out.The separation of solids before the fermentation allowed us to obtain almost 30% higher ethanol yield.This may have been the result of the presence of some toxic compounds, in the unhydrolyzed solid.These compounds may have been released from biomass when ethanol, even at low concentration, appeared in the medium.

Plant Biomass
Jerusalem artichoke (Helianthus tuberosus L.) stalks were harvested from organic 'Żeń-szeń' breeding plants (Kalinówka, Poland), towards the end of October 2017, and delivered fresh.The stalks were air dried and chopped into 0.2-0.5 cm lengths before chemical pretreatment.The obtained results showed that the ethanol yield was not affected by the yeast strain or the inoculum used.The fermentation trials of hydrolysates in the presence of solids, with use of Thermosacc Dry and Ethanol Red, both at a dose of 0.5 and 1.5 g/L, resulted in similar (p > 0.05) ethanol yield ranging from 49.22% to 53.85% of the theoretical yield.According to Azhar et al. [62], the concentration of inoculum has an impact on sugars consumption rate and ethanol productivity, but not on the final ethanol yield.The separation of unhydrolyzed solids before fermentation, resulted in a significant (p < 0.05) increase in fermentation efficiency, reaching 77.61-81.51% of the theoretical yield.However, the obtained yield was not influenced by yeast strain or inoculum size under applied conditions.Usually, the fermentation of lignocellulosic hydrolysates is carried out in the presence of solids, which contain mostly lignin [63].Nonetheless, as reported by Monot et al. [64], it is a good practice to remove the solid parts before fermentation, unless hydrolysis and fermentation processes occur simultaneously.As shown in this paper, it is very important when fermentation of nitric acid pretreated biomass is carried out.The separation of solids before the fermentation allowed us to obtain almost 30% higher ethanol yield.This may have been the result of the presence of some toxic compounds, in the unhydrolyzed solid.These compounds may have been released from biomass when ethanol, even at low concentration, appeared in the medium.

Plant Biomass
Jerusalem artichoke (Helianthus tuberosus L.) stalks were harvested from organic ' Że ń-sze ń' breeding plants (Kalinówka, Poland), towards the end of October 2017, and delivered fresh.The stalks were air dried and chopped into 0.2-0.5 cm lengths before chemical pretreatment.

Yeasts
Fermentation was conducted using the commercial dry distiller's yeasts Saccharomyces cerevisiae strains: Thermosacc Dry (Lallemand Ethanol Technology, Montreal, QC, Canada) and Ethanol Red (Fermentis Ltd., Marcq-en-Baroeul, France).Both selected yeast strains, were declared by the producers to have the average number of live cells of 2 × 10 10 per gram and approx.95% of dry matter.Depending on experiments (see below), yeast dose was 0.5 or 1.5 g/L of hydrolysate.Before the inoculation of hydrolysates, dry yeast was hydrated in 10 times the volume of water, at approximate 35 • C for 15 min, to ensure higher activity and homogenization [66].

Pretreatment
The biomass pretreatments were carried out with 10% w/v dry solid loadings.For acid pretreatment, JAS was soaked in 150 mL of a 2% or 5% (w/v) solution of sulfuric acid, hydrochloric acid or nitric acid, whilst for alkali pretreatment, 150 mL of a 2% or 5% (w/v) solution of sodium hydroxide or potassium hydroxide was used.The samples were autoclaved at 121 • C for 60 min.After pretreatment, the samples were filtered, and the liquid fraction was analyzed after neutralization using the HPLC method to determine the individual sugars, as well as the products of lignocellulose degradation.The solid biomass was washed thoroughly with water until a neutral pH (7.0 ± 0.2) value was achieved.The content of cellulose, hemicellulose, and lignin was then measured, before the solid biomass was subjected to enzymatic hydrolysis.

Enzymatic Hydrolysis and Fermentation
The pretreated material was subjected to enzymatic hydrolysis with 5% w/v solid loading, based on dry matter, in 100 mL of 0.05 M citric buffer solution (pH 4.8).Cellic CTec2 preparation was used with a dose of 10 FPU/g cellulose (15.43 mg protein/g cellulose).A mixture of penicillin and streptomycin (50 U/mL and 50 µg/mL, respectively) was added.Hydrolysis experiments were performed at 50 • C for 72 h.Samples were taken every 24 h, and the supernatant was analyzed for monomeric sugar concentrations and lignocellulose degradation products using HPLC.After hydrolysis, the whole hydrolysate was used in the fermentation stage.The dry distiller's yeast S. cerevisiae Thermosacc Dry was added to each sample at a dose of 0.5 g/L, along with ammonium phosphate as a source of nutrients (0.3 g/L).Fermentation trials were conducted for 72 h at 32 • C, in 250 mL flat-bottomed flasks equipped with fermentation tubes.At the same time, untreated JAS was enzymatically hydrolyzed and fermented as a reference.
The additional fermentation trials of nitric acid pretreated hydrolysates were conducted with the use of S. cerevisiae Thermosacc Dry and Ethanol Red strains, at a standard dose of 0.5 as well as 1.5 g/L.Fermentations were carried out directly in whole hydrolysate (including solids), or after separation of solid residues (fermentation of liquids only).The other parameters of the fermentation process (nitrogen nutrient, temperature, and time) remained unchanged.

Analysis and Calculations
The raw and pretreated JAS, were analyzed to determine their content of total solids according to National Renewable Energy Laboratory (NREL) protocol [37]; cellulose according to the Kurschner-Hoffer method [38]; hemicellulose according to the Ermakov method [39]; and lignin according to the NREL protocol [40].The concentrations of sugars, organic acids, ethanol, and furan aldehydes (HMF, furfural) were analyzed using an HPLC system (Agilent 1260 Infinity, Agilent Technologies, Santa Clara, CA, USA).The compounds were separated using a Hi-Plex H column (7.7 × 300 mm, 8 µm) (Agilent Technologies, Santa Clara, CA, USA), equipped with a refractive index detector (RID).The column and detector temperatures were maintained at 60 • C and 55 • C, respectively.As a mobile phase, 0.05 M H 2 SO 4 was used at a flow rate of 0.7 mL/min, with a sample volume of 20 µL.The samples were filtered through 0.22 µm syringe filters to remove any particulate matter.The total concentration of phenolic compounds was determined using a modified Folin-Ciocalteu method, as described by Antolak et al. [67].Gallic acid (at concentrations of 0-250 mg/L) was used to prepare a standard curve.Samples of enzymatic hydrolysates were analyzed directly, whilst samples of a liquid fraction after pretreatment were diluted ten times before analysis.
The recovery of solid after pretreatment was calculated based on the following equation: Solid recovery = dry weight of biomass after pretreatment dry weight of untreated biomass × 100% The hemicellulose solubilization rate was calculated based on the following equation: (3) The glucose yield (cellulose hydrolysis efficiency) after enzymatic hydrolysis, was calculated based on the following equation:

Figure 1 .
Figure 1.Formation of glucose during enzymatic hydrolysis of JAS pretreated with (a) hydrochloric acid, (b) sodium hydroxide, (c) sulfuric acid, (d) potassium hydroxide and (e) nitric acid at concentration of 2% (blue square) or 5% (purple triangle), in relation to untreated JAS (orange diamond).The dotted lines indicate the theoretical maximum glucose concentration that can be achieved for 2% (blue) and 5% (purple) acid/alkali concentrations.

Figure 1 .
Figure 1.Formation of glucose during enzymatic hydrolysis of JAS pretreated with (a) hydrochloric acid, (b) sodium hydroxide, (c) sulfuric acid, (d) potassium hydroxide and (e) nitric acid at concentration of 2% (blue square) or 5% (purple triangle), in relation to untreated JAS (orange diamond).The dotted lines indicate the theoretical maximum glucose concentration that can be achieved for 2% (blue) and 5% (purple) acid/alkali concentrations.

Figure 2 .
Figure 2. Concentration of ethanol in hydrolysates pretreated using different reagents after 72 h of fermentation and concentration of residual glucose after fermentation.Different lower-case letters, indicate significant differences (p < 0.05) between the mean values of the ethanol concentration (Tukey's post-hoc test).Different capital letters, indicate significant differences (p < 0.05) between the mean values of the residual glucose concentration (Tukey's post-hoc test).

Figure 3 .
Figure 3. Yield of ethanol (% of theoretical) from hydrolysates pretreated using different reagents, after 72 h of fermentation.Different lower-case letters, indicate significant differences (p < 0.05) between the mean values of the ethanol yield (Tukey's post-hoc test).

Figure 2 .
Figure 2. Concentration of ethanol in hydrolysates pretreated using different reagents after 72 h of fermentation and concentration of residual glucose after fermentation.Different lower-case letters, indicate significant differences (p < 0.05) between the mean values of the ethanol concentration (Tukey's post-hoc test).Different capital letters, indicate significant differences (p < 0.05) between the mean values of the residual glucose concentration (Tukey's post-hoc test).

Figure 3 .
Figure 3. Yield of ethanol (% of theoretical) from hydrolysates pretreated using different reagents, after 72 h of fermentation.Different lower-case letters, indicate significant differences (p < 0.05) between the mean values of the ethanol yield (Tukey's post-hoc test).

Figure 4 .
Figure 4. Yield of ethanol (% of theoretical) from nitric acid pretreated hydrolysates fermented with the use of different yeast strains and inoculum.Different lower-case letters, indicate significant differences (p < 0.05) between the mean values of the ethanol yield (Tukey's post-hoc test).

Figure 4 .
Figure 4. Yield of ethanol (% of theoretical) from nitric acid pretreated hydrolysates fermented with the use of different yeast strains and inoculum.Different lower-case letters, indicate significant differences (p < 0.05) between the mean values of the ethanol yield (Tukey's post-hoc test).
cellulose solubilization rate was calculated based on the following equation: , after fermentation, was calculated based on the following equation:

Table 1 .
Solids recovery and chemical composition of pretreated Jerusalem artichoke stalks (JAS).

Table 2 .
Concentration of sugars in liquid fraction after acid or alkaline pretreatment of JAS, with hemicellulose and cellulose solubilization rate.

Table 3 .
Concentration of inhibitors in liquid fraction after acid or alkaline pretreatment of JAS.
• C

Table 4 .
Concentration of monomeric sugars and glucose yield after hydrolysis of acid-or alkali-pretreated JAS.
1 Different lower-case letters in the columns indicate a significant difference (p < 0.05), as analyzed by the Tukey's post-hoc test. 2 n.d.-not detected.