Repetitive Detection of Aromatic Hydrocarbon Contaminants with Bioluminescent Bioreporters Attached on Tapered Optical Fiber Elements

In this study, we show the repetitive detection of toluene on a tapered optical fiber element (OFE) with an attached layer of Pseudomonas putida TVA8 bioluminescent bioreporters. The bioluminescent cell layer was attached on polished quartz modified with (3-aminopropyl)triethoxysilane (APTES). The repeatability of the preparation of the optical probe and its use was demonstrated with five differently shaped OFEs. The intensity of measured bioluminescence was minimally influenced by the OFE shape, possessing transmittances between 1.41% and 5.00%. OFE probes layered with P. putida TVA8 were used to monitor liquid toluene over a two-week period. It was demonstrated that OFE probes layered with positively induced P. putida TVA8 bioreporters were reliable detectors of toluene. A toluene concentration of 26.5 mg/L was detected after <30 min after immersion of the probe in the toluene solution. Additional experiments also immobilized constitutively bioluminescent cells of E. coli 652T7, on OFEs with polyethyleneimine (PEI). These OFEs were repetitively induced with Lauria-Bertani (LB) nutrient medium. Bioluminescence appeared 15 minutes after immersion of the OFE in LB. A change in pH from 7 to 6 resulted in a decrease in bioluminescence that was not restored following additional nutrient inductions at pH 7. The E. coli 652T7 OFE probe was therefore sensitive to negative influences but could not be repetitively used.

The toluene induction solution consisted of MSM (19 mL) and toluene-saturated water (1 mL). The final concentration of toluene was 26.5 mg/L, pH 7.2.
The LB induction solution contained 75% of MSM and 25% of LB medium. The LB, PB and MSM media were autoclaved at 121 • C for 40 min. The trace elements, ferric chloride, and glucose solutions were sterilized by filtration through polytetrafluoroethylene Nalge Nunc Syringe Filters, 0.2 µm from Fischersci.com (Pittsburgh, PA, USA). The YMM was autoclaved at 121 • C for 20 min and was supplemented with sterile glucose to achieve final 2% concentration.

Microorganisms and Their Cultivation
Bioluminescent bioreporter microorganisms were kindly provided by the University of Tennessee. Pseudomonas putida TVA8 is a bioluminescent bioreporter harboring a chromosomal tod-luxCDABE fusion [23] and produces bioluminescence in the presence of BTEX (benzene, toluene, ethylbenzene and xylene) and trichlorethylene. The constitutively bioluminescent bacterium Escherichia coli 652T7 is a luxCDABE-based strain that was used by Du et al. (2015) to monitor the biotoxicity of cellulose nanocrystals [22]. P. putida TVA8 and E. coli 652T7 cells were separately cultivated on LB kan agar for 48 h at 28 • C and then reinoculated to LB kan broth. The cultures were placed in a shaking incubator at 100 rpm and 28 • C and grown overnight to an optical density at 600 nm (OD 600 ) of 0.3 ± 0.15 [18,22].

Tapered Optical Fiber Elements (OFEs)
An OFE manufacturing starts with a preform which is heated in a furnace and drawn into an optical fiber. The narrowing part between the dripped part and the fiber was used as an OFE ( Figure  S1). The resulting shape is determined by preform size, drawing temperature and weight. The OFEs were kindly donated from the Institute of Photonics and Electronics of the Czech Academy of Sciences. The ends of OFEs were polished. Each OFE was characterized by diameters (D x ) measured in 10 mm distances along its length (L = Z max ) (Figures 1 and 2). For the purpose of software calculations (transmittance), the OFE shapes were approximated by a bi-exponential equation ("Exp2") in Matlab software (Table 1). This software was used by Kalabova et al. (2018) [17]

Microorganisms and Their Cultivation
Bioluminescent bioreporter microorganisms were kindly provided by the University of Tennessee. Pseudomonas putida TVA8 is a bioluminescent bioreporter harboring a chromosomal tod-luxCDABE fusion [23] and produces bioluminescence in the presence of BTEX (benzene, toluene, ethylbenzene and xylene) and trichlorethylene. The constitutively bioluminescent bacterium Escherichia coli 652T7 is a luxCDABE-based strain that was used by Du et al. (2015) to monitor the biotoxicity of cellulose nanocrystals [22]. P. putida TVA8 and E. coli 652T7 cells were separately cultivated on LBkan agar for 48 h at 28 °C and then reinoculated to LBkan broth. The cultures were placed in a shaking incubator at 100 rpm and 28 °C and grown overnight to an optical density at 600 nm (OD600) of 0.3 ± 0.15 [18,22].

Tapered Optical Fiber Elements (OFEs)
An OFE manufacturing starts with a preform which is heated in a furnace and drawn into an optical fiber. The narrowing part between the dripped part and the fiber was used as an OFE ( Figure  S1). The resulting shape is determined by preform size, drawing temperature and weight. The OFEs were kindly donated from the Institute of Photonics and Electronics of the Czech Academy of Sciences. The ends of OFEs were polished. Each OFE was characterized by diameters (Dx) measured in 10 mm distances along its length (L = Zmax) (Figures 1 and 2). For the purpose of software calculations (transmittance), the OFE shapes were approximated by a bi-exponential equation ("Exp2") in Matlab software (Table 1)

Preparation of OFEs for Chemical Modification
The OFEs were washed in acetone and rinsed with deionized water. The wider end of the OFE was immersed in Piranha solution at 70 °C for 30 min, washed again in deionized water, and dried at 110 °C for 1 h. After drying, the wider ends of the OFEs were modified with (3-aminopropyl)triethoxysilane (APTES) or polyethyleneimine (PEI).

Surface Modification of OFE with APTES
The wider end of each OFE was immersed in a solution of 5% (v/v) APTES in dry toluene at ambient temperature for 24 h. Afterwards, the OFE was rinsed with toluene and acetone and finally dried at 110 °C for 1 h (modified protocol from [24]).

Surface Modification of OFE with PEI
The wider end of the OFE was immersed in a 0.2% (w/v) solution of PEI in deionized water for 30 min and then air-dried [25].

Adsorption of Bioreporter Cells on OFE Modified Surfaces
The APTES-modified end of the OFE was fixed vertically in an Erlenmeyer flask containing 150 mL of LBkan medium to which was added 1 mL of an overnight culture of either P. putida TVA8 or E. coli 652T7. Cells grew and adsorbed on the wider element end in a shaker at 50 rpm and 28 °C for 4 days (i.e., the minimal time needed for P. putida TVA8 cells to be adsorbed [19]).

Preparation of OFEs for Chemical Modification
The OFEs were washed in acetone and rinsed with deionized water. The wider end of the OFE was immersed in Piranha solution at 70 • C for 30 min, washed again in deionized water, and dried at 110 • C for 1 h. After drying, the wider ends of the OFEs were modified with (3-aminopropyl)triethoxysilane (APTES) or polyethyleneimine (PEI).

Surface Modification of OFE with APTES
The wider end of each OFE was immersed in a solution of 5% (v/v) APTES in dry toluene at ambient temperature for 24 h. Afterwards, the OFE was rinsed with toluene and acetone and finally dried at 110 • C for 1 h (modified protocol from [24]).

Surface Modification of OFE with PEI
The wider end of the OFE was immersed in a 0.2% (w/v) solution of PEI in deionized water for 30 min and then air-dried [25].

Adsorption of Bioreporter Cells on OFE Modified Surfaces
The APTES-modified end of the OFE was fixed vertically in an Erlenmeyer flask containing 150 mL of LB kan medium to which was added 1 mL of an overnight culture of either P. putida TVA8 or E. coli 652T7. Cells grew and adsorbed on the wider element end in a shaker at 50 rpm and 28 • C for 4 days (i.e., the minimal time needed for P. putida TVA8 cells to be adsorbed [19]).
To increase adsorption of E. coli 652T7 to the APTES modified OFE surface, FeCl 3 was added to the LB kan growth medium at a final concentration of 150 µM [26].
Due to inadequate growth of E. coli 652T7 on the APTES modified OFE surface, the PEI modified surface was attempted as an alternative. A 20 mL aliquot of an overnight culture of E. coli 652T7 in LB kan medium was centrifuged at 3000 g for 5 min. The pellet was resuspended in 20 mL MSM and centrifuged again at 3000 g for 5 min. The pellet was then resuspended in 20 mL of 0.2% PEI in MSM and left in a shaker for 30 min at 100 rpm and 28 • C. Finally, the culture was centrifuged at 3000 g for 5 min and the pellet resuspended in 20 mL of MSM [25]. The wider end of the PEI modified OFE was then immersed in the 20 mL suspension of E. coli 652T7 and shaken at 50 rpm for 30 min and 28 • C.

Measurement of Induced Bioluminescence
The thin end of the OFE was attached to a light guiding cable, which was connected to the Oriel 70680 photon multiplier tube. The accelerating voltage of the photon multiplier tube was set to 850 V and the electrical current was manually read from the Oriel 7070 detection system. Experiments were set-up and performed in a light-tight box. The wider end of the OFE with the adsorbed cells was fixed 4 ± 1 mm from the bottom of a 50 mL glass beaker that was then filled with 10 mL of induction solution (toluene for P. putida TVA8 or LB/MSM for E. coli 652T7), thereby immersing the wider end of the OFE in the induction solution ( Figure 3). Reflective aluminum foil was placed underneath the beaker. The current, proportional to the intensity of bioluminescence, was recorded every 30-60 min for 18 h at an ambient temperature of 21 • C. Every 24 h, the wider end of the OFE was gently washed with MSM using a pipette, and then re-immersed into fresh induction solution. Exceptions to these 24 h washings were the 1-3 day pauses for holidays and weekends. On these days, the element remained immersed in the induction solution for up to 72 h. Five different OFEs were tested ( Figure 2) with each one being measured over a period of 14-20 days. Due to inadequate growth of E. coli 652T7 on the APTES modified OFE surface, the PEI modified surface was attempted as an alternative. A 20 mL aliquot of an overnight culture of E. coli 652T7 in LBkan medium was centrifuged at 3000 g for 5 min. The pellet was resuspended in 20 mL MSM and centrifuged again at 3000 g for 5 min. The pellet was then resuspended in 20 mL of 0.2% PEI in MSM and left in a shaker for 30 min at 100 rpm and 28 °C. Finally, the culture was centrifuged at 3000 g for 5 min and the pellet resuspended in 20 mL of MSM [25]. The wider end of the PEI modified OFE was then immersed in the 20 mL suspension of E. coli 652T7 and shaken at 50 rpm for 30 min and 28 °C.

Measurement of Induced Bioluminescence
The thin end of the OFE was attached to a light guiding cable, which was connected to the Oriel 70680 photon multiplier tube. The accelerating voltage of the photon multiplier tube was set to 850 V and the electrical current was manually read from the Oriel 7070 detection system. Experiments were set-up and performed in a light-tight box. The wider end of the OFE with the adsorbed cells was fixed 4 ± 1 mm from the bottom of a 50 mL glass beaker that was then filled with 10 mL of induction solution (toluene for P. putida

Visualization of OFE Cell Adherence Using Scanning Electron Microscopy (SEM)
SEM was used to verify the attachment of P. putida TVA8 to its APTES modified OFE. Since the OFEs themselves could not be processed for SEM imaging, quartz cones were used as an alternative

Visualization of OFE Cell Adherence Using Scanning Electron Microscopy (SEM)
SEM was used to verify the attachment of P. putida TVA8 to its APTES modified OFE. Since the OFEs themselves could not be processed for SEM imaging, quartz cones were used as an alternative ( Figure S2). Quartz cones were surface modified with APTES and P. putida TVA8 cells were immobilized as explained above. Surface modified quartz cones with adhered cells were placed in a 50 mL beaker containing 30 mL of toluene induction solution. Bioluminescent signaling by the cells was verified by taking light measurements in a Perkin-Elmer IVIS Lumina K imaging system. After two days of immersion, SEM imaging was performed. The quartz cones with immobilized cells were fixed in McDowell-Trump Fixative (Fischer Scientific), gold coated (SPI Module Sputter Coater), and then viewed in a Zeiss Auriga SEM.

Statistics
Five different OFEs were tested (Figure 2). Five OFEs were modified with APES and one was modified with PEI. Each OFE was used once in a single experiment, which lasted 20 days, where light readings were taken every 30-60 min for 18 h. Replication of the immobilization technique on APTES modified quarz surface, and measurement of bioluminescence was shown. Data from the five OFEs plus one OFE from reference [19] were combined. Bioluminescence maxima, peak integrals, and times of the first bioluminescence maxima within the 20 days were plotted and approximated with polynomial and exponential curves respectively.

Imobilization and Induction of Bioluminescence from P. putida TVA8 on APTES Modified OFEs
The APTES modification of OFE led to the successful adherence of P. putida TVA8 on its surface. Two days after beginning the immobilization procedure, lumps of cell clusters (100-1000 µm apart) among much smaller scattered clusters or single cells were observed under SEM (Figure 4), which corresponds to standard biofilm establishment characteristics [27]. A fully developed biofilm layer of P. putida TVA8 was photographed after 130 days on APTES modified quartz fiber and was presented in a previous paper [19].
The time-records of daily inductions of the five different OFEs are shown in Figure 5. The intensities of the detected light were low during the first few days after induction and then gradually increased ( Figure 6). This might be ascribed to an advanced covering of the base of the OFE with cells. Most time-record curves show two peaks.
The times of the first bioluminescence maxima decreased from more than 10 h to 2-5 h after the fifth day of induction. The same times of the first maxima were observed in a previous study (Figure 7) [19]. The second bioluminescence maxima (appearing after 12-14 h) were probably caused by the bioluminescence of cells growing in the induction solution, which supports the video record (Video S1). This accelerated video shows the course of the induction of P. putida TVA8 adhered on the OFE cone. A gradual increase in bioluminescence of cells adhering on the APTES modified surface, the base, and the part of the cone, was followed by a high bioluminescence intensity located only on the base. The bioluminescence of these attached cells fell below the detection limits and at the end (12-15 h) a low light signal emerged in the induction solution.
The measured intensities of bioluminescence significantly differed among the five OFEs. Table S1 compares time-records, bioluminescence maxima, and integrals of bioluminescence. OFEs were repeatedly induced over 20 days and bioluminescence always increased after immersion in the toluene induction solution (A 10x, B1 14x, B2 16x, C 15x, D 14x). To use such an OFE biosensor for the detection of toluene, a signal above twice the background noise of the detector (2 × 0.26 nA at 850 V) can reliably confirm the presence of toluene in the liquid sample. This level of bioluminescence generation appeared within 0.5 h after immersion in the induction solution. This growth was observed in all inductions (for all OFEs) with exceptions over the first two days. During this initial period, the cell layers were likely not matured and performed slowly, with low bioluminescent responses.    The intensities of the detected light were low during the first few days after induction and then gradually increased (Figure 6). This might be ascribed to an advanced covering of the base of the OFE with cells. Most time-record curves show two peaks. The times of the first bioluminescence maxima decreased from more than 10 h to 2-5 h after the fifth day of induction. The same times of the first maxima were observed in a previous study (Figure 7) [19].     These results confirmed previous observations that OFEs adhering with P. putida TVA8 can be repeatedly used as a detector for toluene after a few days of the stabilization of immobilized cells [19]. A stabilization period of two to four days was observed, even if the cells were immobilized in silica gel [18,28]. Possible ways to improve the stability of bioluminescence signal responses include engineering a cell strain with two reporter genes (one under control of an analyte of interest and one constitutively present to monitor cell viability). An alternative to this is the use of two independent bioreporters (constitutive and inducible) derived from the same strain. Nevertheless, in the optical fiber arrangement, this resolution requires two fibers, which complicates the sensor construction. The analyte-specific signal must be than corrected according to cell viability [29]; or genetical manipulation of a bacterial strains ability to create and dissolve biofilm structure [30,31].

Influence of the Shape of OFE
The calculated characteristics of OFEs are presented in Table 2. Transmittances were calculated numerically as a percentage of rays that pass through the OFE from the wider end to a detector, which is placed on the thin end of the OFE. The number of cells on the wider end of each OFE was determined based on the assumption that the cells are spheres, with diameters of 1 µm, organized in one layer [17]. A product of transmittance and number of cells, referred to as OFE efficiency, is the relative amount of light transmitted by the OFE from a monolayer of cells on the wider end to the detector connected to the OFE thin end [32]. Using the same mathematical model Kalabova et al. [17], we predicted an outcome of experiments with an OFE and a plastic-clad-silica (PCS) fiber, in this study transmittances calculated among the five different OFEs differed by 3.6% at most (see Table 2). These transmittances are negligible in comparison to the changes in bioluminescence production, likely due to a fluctuation in the number of immobilized cells and their physiological state. Intensities of measured bioluminescence ( Figure 5) were independent of OFE transmittances and OFE efficiencies. Intensity of bioluminescence production is susceptible to small variations of temperature, pH, medium composition, bioavailability of inducer to each single cell, and many other factors that cannot be completely controlled and increase the higher variability of the bioluminescence. Calculated transmittances of OFEs significantly increased as their shape moved closer to a frustum cone (Figures S3 and S4). In reality, OFEs always exhibit such a curved shape.

Immobilization and Induction of Bioluminescence from E. coli 652T7
In the LB Kan growth medium, E. coli 652T7 did not adhere on the APTES modified base of the OFEs regardless of the addition of ferric chloride which was added to theoretically enhance the adhesion of microorganisms by lowering the repulsion forces [26]. Cell attachment was observed only at the interface of growth medium and air (Figure 8). At this interface, photon-OFE binding efficiency is <1%, thus bioluminescence of these attached cells did not significantly contribute to detected light. In the LBKan growth medium, E. coli 652T7 did not adhere on the APTES modified base of the OFEs regardless of the addition of ferric chloride which was added to theoretically enhance the adhesion of microorganisms by lowering the repulsion forces [26]. Cell attachment was observed only at the interface of growth medium and air (Figure 8). At this interface, photon-OFE binding efficiency is <1%, thus bioluminescence of these attached cells did not significantly contribute to detected light.  Figure 9. Other than the first induction intensities, bioluminescence increased within 15 min after immersing the OFE into the LB solution. The intensities remained stable for 18 h on the first day, 6-9 h on all other days, and then sharply decreased due to a depletion of nutrients. To test the OFE with immobilized E. coli 652T7 as a biosensor for biotoxicity, HCl was added to the induction solution on the eighth day. This caused pH lowering to pH = 6 and decreased the bioluminescence, which did not recover after the following two inductions. These results imply that an OFE immobilized with E. coli 652T7 is sensitive to influences that affect cell E. coli 652T7 was immobilized on the base of OFE-D with PEI. The time records of daily inductions with LB medium is presented in Figure 9. Other than the first induction intensities, bioluminescence increased within 15 min after immersing the OFE into the LB solution. The intensities remained stable for 18 h on the first day, 6-9 h on all other days, and then sharply decreased due to a depletion of nutrients. To test the OFE with immobilized E. coli 652T7 as a biosensor for biotoxicity, HCl was added to the induction solution on the eighth day. This caused pH lowering to pH = 6 and decreased the bioluminescence, which did not recover after the following two inductions. These results imply that an OFE immobilized with E. coli 652T7 is sensitive to influences that affect cell viability but cannot be repetitively used as a biosensor since the cells are dying and not recovering.

Conclusions
In this study, we immobilized the bioluminescent bioreporter P. putida TVA8 on a tapered OFE in order to prepare a biosensor for the detection of liquid toluene. This study broadened our previous research, where we used physico-chemical models, using contact angles and zeta potential, to facilitate the attachment of P. putida TVA8 to quartz surfaces after treatment with APTES. The biofilm development of P. putida TVA8 with time was quantified and the repeatability of the biofilm preparation and the repeatability of bioluminescence detection was determined. Other than a short maturation period (~5 days), the OFEs exhibited a stable bioluminescent response for at least 20 days.
We additionally immobilized the constitutively bioluminescent toxicity bioreporter E. coli 652T7 on a PEI modified OFE and demonstrated its potential use as a biosensor for cytotoxicity. Additionally, the immobilization process that we used, without any bulky matrix requirements, could be applied towards many other microbial bioreporters for the biosensing of a variety of different analytes. However, since the reproducibility of the bioreporter responses remains low, the developed biosensor can be used for online, rapid and multiplexed monitoring of the presence of a pollutant, but not its concentration.
Supplementary Materials: The following are available online at www.mdpi.com/xxx/s1. Figure S1: Scheme of OFEs preparation with description; Figure S2: Quartz cones; Video S1: Video record of bioluminescence of Pseudomonas putida TVA8 attached on quartz cone. Video recorded for 17 h and accelerated to 20 s; Table S1: Integrals of intensities and maxima of bioluminescence for five OFEs; Figure S3: Plotted geometrical shape of five theoretical OFEs with identical Dmax, Dmin, (radius r) and length L, but different shape (bent), OFE models

Conclusions
In this study, we immobilized the bioluminescent bioreporter P. putida TVA8 on a tapered OFE in order to prepare a biosensor for the detection of liquid toluene. This study broadened our previous research, where we used physico-chemical models, using contact angles and zeta potential, to facilitate the attachment of P. putida TVA8 to quartz surfaces after treatment with APTES. The biofilm development of P. putida TVA8 with time was quantified and the repeatability of the biofilm preparation and the repeatability of bioluminescence detection was determined. Other than a short maturation period (~5 days), the OFEs exhibited a stable bioluminescent response for at least 20 days.
We additionally immobilized the constitutively bioluminescent toxicity bioreporter E. coli 652T7 on a PEI modified OFE and demonstrated its potential use as a biosensor for cytotoxicity. Additionally, the immobilization process that we used, without any bulky matrix requirements, could be applied towards many other microbial bioreporters for the biosensing of a variety of different analytes. However, since the reproducibility of the bioreporter responses remains low, the developed biosensor can be used for online, rapid and multiplexed monitoring of the presence of a pollutant, but not its concentration.

Supplementary Materials:
The following are available online at http://www.mdpi.com/1424-8220/20/11/3237/s1. Figure S1: Scheme of OFEs preparation with description; Figure S2: Quartz cones; Video S1: Video record of bioluminescence of Pseudomonas putida TVA8 attached on quartz cone. Video recorded for 17 h and accelerated to 20 s; Table S1: Integrals of intensities and maxima of bioluminescence for five OFEs; Figure S3: Plotted geometrical shape of five theoretical OFEs with identical Dmax, Dmin, (radius r) and length L, but different shape (bent), OFE models were used to calculate their transmittances; Figure S4: Calculated transmittances of the five theoretical OFEs based on their geometrical shapes.